BAC Information

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BAC

Clone NameB6Ng01-135I13
Chromosome14 (Build37)
Map Location 111,524,800 - 111,525,401
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135I13.bB6Ng01-135I13.g
ACCDH935545DH935546
length6001,200
definitionDH935545|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I13, 5' end.DH935546|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
caacaaaagcagtagttttttttaataaaatggtatgtacacacaaggca
aatggcttatgttttcttagaactatttgcttcattgtaaacgtggggtt
cagacacatatgtgatagaataaatcaccattagatagacattcataaag
atcttaatatttcattctgtatattaatattcctaaaattagacaatgac
atacccattttcattaaatgtgaatgaaaaatcgatgtaaatagatgtac
ccatcaaatttttgagaaatgtttaattgttcctaggctggataagccaa
agttaaaaaatatatatattcacaagcctcttatcaattggtatggtcca
aaagaagtataaatcttcccactaaattgcatttctgacacatgtggctt
ttttttttatcagtgtaagcagtttcagagttttatacttaggatacctg
atataaactgtccaaattttgtaattattttcagtcggcaagttattaag
aagtgatagctttgtatatttactcaaacttgtattaaggttgaaaatcc
acttaattagtcattcctcacctcaacccctgaaccccacgttttgcagt

cggaatttatgtaggctctgagccccattttttaatagggttattagatt
tttagaagtccatcttcttaagttctttatatatattggatattaatcct
ctatctgatttaggttcagtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgaaaatgtcttttgtcttacagatgctttgccacctca
caccagttagaatggctaagatcaaaaattcaggtgacagcagatgctgg
cgaggatgtggagaaagaggaacactcctccattgttagtgggattgcaa
actggtacaaccactctggaaatcggtctggcggtttctcagaaaactgg
acatagtactaccggaggatccagcaatacctctcctgggcatatatcca
gaagatgccccaacgggtaagaaggacacatgctccactatgttcatagc
agccttatttataatagccagaagctggaaataacccagatgtccctcaa
cagaggaatggatacagaagatgtgatacatttacacaatggagtattat
tactcagcaattaaaaacaatgaattcatgaaattcttaggcaaatggat
ggatctggaggatatcatcctgagtgaggtaacccaatcacaaaagaaca
cacatggtatgcactcactgataagcagatattagctcagaaacttagaa
tatctgagatacaatttgcaaaacatatgaaactcaagaagaaggaagac
caaagtgtagatacttcaatccttcttagaatggggaacaaaatacccat
ggaaaggagttacagagacaaagttcagagctaagatagaaggaaagacc
actattgcatatgccagaagatttgctgacaggaccctccctgatatagc
tgtctcttgtgaggctattccagtgccaggaaatacagaagtagatactc
atagtcattttatagatggaacaaagggctcctatggaggagctaaagaa
tgtactctaagatctgaaggggtctgtaacaatagtggacaacaggaact
acattacccccagacttcgtccttactgaaatatggtgcaagaaaatgct
cactcctatcacaggaagagacccctttcttgcaactattgcccgacaac
ggaaccgtctgaattgtgagattggggctttgtgagtcctgttagaccga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111524800_111525401
seq2: B6Ng01-135I13.b_35_640

seq1  GAATTCCAACAAAAGCAGTAGTTTTTTCAATATATTATGGTATGTACACA  50
      |||||||||||||||||||||||||||  | |||  ||||||||||||||
seq2  GAATTCCAACAAAAGCAGTAGTTTTTTTTA-ATAAAATGGTATGTACACA  49

seq1  CAAGGCAAATGGCTTATGTTTTCCAAGAACTATTTGCTTCATTGTAAACG  100
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  CAAGGCAAATGGCTTATGTTTTCTTAGAACTATTTGCTTCATTGTAAACG  99

seq1  TGGGGTTCAGACACATATGTGATAGAATAAATCACCATTAGATAGACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTCAGACACATATGTGATAGAATAAATCACCATTAGATAGACATT  149

seq1  CATAAAGATCTTAATATTTCATTCTGTATATTAATATTCCTAAAATTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGATCTTAATATTTCATTCTGTATATTAATATTCCTAAAATTAGA  199

seq1  CAATGACATACCCATTTTCATTAAATGTGAATGAAAAATCGATGTAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACATACCCATTTTCATTAAATGTGAATGAAAAATCGATGTAAATA  249

seq1  GATGTACCCATCAAATTTTTGAGAAATGTTTAATTGTTCCTAGGCTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACCCATCAAATTTTTGAGAAATGTTTAATTGTTCCTAGGCTGGAT  299

seq1  AAGCCAAAGTTAAAAAATATATATATTCACAAGCCTCTTATCAATTGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAAGTTAAAAAATATATATATTCACAAGCCTCTTATCAATTGGTA  349

seq1  TGGTCCAAAAGAAGTATAAATCTTCCCACTAAATTGCATTTCTGACACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAAAAGAAGTATAAATCTTCCCACTAAATTGCATTTCTGACACAT  399

seq1  GTGGC-TTTGAAAGTATCAGTGTAAGCAGTTTCAGAGTTTTATACTTAGG  449
      ||||| |||     ||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTTTTTTTTATCAGTGTAAGCAGTTTCAGAGTTTTATACTTAGG  449

seq1  ATACCTGATATAAACTGTCCAAA-AGGGCAATTATTTTCAGTCGGCAAGT  498
      |||||||||||||||||||||||    | |||||||||||||||||||||
seq2  ATACCTGATATAAACTGTCCAAATTTTGTAATTATTTTCAGTCGGCAAGT  499

seq1  TATTAAGAAGTGATAGC-TTGTATATTTACTCAAACTTGTATTAAGGTTG  547
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATTAAGAAGTGATAGCTTTGTATATTTACTCAAACTTGTATTAAGGTTG  549

seq1  AAAATCCACTTAATTAGTCATTCCTCACCTCAA-CCCTGAACCCCACG-T  595
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  AAAATCCACTTAATTAGTCATTCCTCACCTCAACCCCTGAACCCCACGTT  599

seq1  TTGCAGT  602
      |||||||
seq2  TTGCAGT  606