BAC Information

Click to search

BAC

Clone NameB6Ng01-136H15
Chromosome14 (Build37)
Map Location 96,428,071 - 96,429,236
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677613, LOC100043784, LOC382931, 4921530L21Rik
Downstream geneKlhl1, LOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136H15.bB6Ng01-136H15.g
ACCDH936240DH936241
length1,1451,218
definitionDH936240|Mus musculus domesticus DNA, BAC clone: B6Ng01-136H15, 5' end.DH936241|Mus musculus domesticus DNA, BAC clone: B6Ng01-136H15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgcatttgcatcattgactggagataatctgaatagcaagag
caagctttaaacagtgatttttaacatggtgtcccttcatggggtttttt
tttttcacccctttacagcccaaagcatcagaaaaggtagactccaataa
aagaaagaagaaaataatacctaaaaataaagcaagaaatgccatcactc
caacaccaatttccaaggtaaagagatgtaaaaatgaaagagcatgcact
atctcagtcctatttcaaattctgagactaagcctgctgttcagctgctg
cttaaagaaagcagaggataaggcatttgaatttcaactagatgtttaaa
gagggagcgctctgaaagtaataccagggaatatatatgggtgcttagaa
aattatataatagttcaaataatggtttttcttcagtatggaataaatac
cccacatcattgaattggatgtaaattaaatctaaagacaaaaactaaat
aataagtatgaacaaaatcactcatatttaaactcaattagctcactctc
tgtcatgttttataaactcagagaacatcaaatgaagatgtatagcacaa
ccattttgtgcttgacattttacaggaacatactgagaacaaaggaatat
atgcccattataaaaattgcattatttattgaagctttctttgtttgatt
ctcttaagaagatattttaaatttgtgaaattatttgagagtcaatcata
ggatatgcctgcagaaaaagttgagatttgtcattcaaaatataggaaag
aaaataagtaagaatactttttttttgaaaataagtgaaactcaattcaa
ctagaacaatgtgtagacccaggtattcgattattcttccaatgtctctt
atcagcagttagtgactgattctagagagaggtctgaggtattttccaga
tttccaggtgcaatacagacaagtcaggtcaatgccttagcatgccacta
aaatgatccaccatgttttaaaatatcactgaagaccctgggtggggtac
taataactgttgttcctacatcatacactcacatctacttgtgtgtcaga
tattccctctgtcctatgtttcgaattgattatgaacgtcatagc
gaattcattttgtgctggccaattactcctagacataagataattttcat
atactaattgtcatatgtttggggaaaaatctgattttctgttaccaagt
atcagttgtgtatagcttcgtgattagaagtgagtctttggacccacttc
ctcttttcactgctgggattttgtcggatttgaacctcaagtcatgtgaa
tgatgtcagtttgtgtgggctcatgtgtgtatcagtcctactactgttgt
ggaagacacggttttctaagactcatctaccacttttggctcttataatc
acttcacctcatcttttgtatagatacccaagttataagttatcccattt
aggactgagaattctgaagccactcagttctctgcacactttccagttgt
aggtctctgtgttaatttctacttactgaaaaaggaaggtttaatgggaa
tttcatgatgtattcatggatatattagtaggtggttatatgtcatttgt
tttctcttcccttagaatagtagtaatgttttcttcatgaggtatctcta
cctaggctcttgatgacataacagtgctgggtatgattttatggtatgga
gtaggcatcaagtccagtcaaatgtagtttgctagtcccataatatttgc
tctagtattgaatcagtaaatctggcaggccattagcttttgcaagtcac
agtttttgtggctaagtggcagtgttgattatctttctcctctgagagcc
agcaaattatcttcccatatcaggaatgcagtaaggcgaattgtccattt
gggtaccagctcaatttcttcatgttcaatgaatatagaaggaaatattc
tcagtaaaaaccttgggaaacagaactcaagaaacaacaaaacagttatt
tatcttgatcaatttgggtccatcatagagatacagggatggttcagaca
caaaatcatagtgtatcttacacatgaccaactgatagacaaatccacat
tatatccaattagatgcagaaattgtatttgacatatcccttgattaata
aagcttgggagcgaattgagtggaggaattttttttaaataacattccaa
ttaagtagcttagcactgatagaaaggcaacattcttaatcggaatagaa
gagtacgttcaccgtatcagacgactcttcacgagttggaaatattttaa
ctcacatatactgactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_96428071_96429236
seq2: B6Ng01-136H15.b_49_1193

seq1  GAATTCATTGCATTTGCATCATTGACTGGAGATAATCTGAATAGCAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCATTTGCATCATTGACTGGAGATAATCTGAATAGCAAGAG  50

seq1  CAAGCTTTAAACAGTGATTTTTAACATGGTGTCCCTTCATGGGGTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTTAAACAGTGATTTTTAACATGGTGTCCCTTCATGGGGTTTTTT  100

seq1  TTTTTCACCCCTTTACAGCCCAAAGCATCAGAAAAGGTAGACTCCAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACCCCTTTACAGCCCAAAGCATCAGAAAAGGTAGACTCCAATAA  150

seq1  AAGAAAGAAGAAAATAATACCTAAAAATAAAGCAAGAAATGCCATCACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAGAAAATAATACCTAAAAATAAAGCAAGAAATGCCATCACTC  200

seq1  CAACACCAATTTCCAAGGTAAAGAGATGTAAAAATGAAAGAGCATGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCAATTTCCAAGGTAAAGAGATGTAAAAATGAAAGAGCATGCACT  250

seq1  ATCTCAGTCCTATTTCAAATTCTGAGACTAAGCCTGCTGTTCAGCTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTCCTATTTCAAATTCTGAGACTAAGCCTGCTGTTCAGCTGCTG  300

seq1  CTTAAAGAAAGCAGAGGATAAGGCATTTGAATTTCAACTAGATGTTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGAAAGCAGAGGATAAGGCATTTGAATTTCAACTAGATGTTTAAA  350

seq1  GAGGGAGCGCTCTGAAAGTAATACCAGGGAATATATATGGGTGCTTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGCGCTCTGAAAGTAATACCAGGGAATATATATGGGTGCTTAGAA  400

seq1  AATTATATAATAGTTCAAATAATGGTTTTTCTTCAGTATGGAATAAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATAATAGTTCAAATAATGGTTTTTCTTCAGTATGGAATAAATAC  450

seq1  CCCACATCATTGAATTGGATGTAAATTAAATCTAAAGACAAAAACTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATCATTGAATTGGATGTAAATTAAATCTAAAGACAAAAACTAAAT  500

seq1  AATAAGTATGAACAAAATCACTCATATTTAAACTCAATTAGCTCACTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTATGAACAAAATCACTCATATTTAAACTCAATTAGCTCACTCTC  550

seq1  TGTCATGTTTTATAAACTCAGAGAACATCAAATGAAGATGTATAGCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTTTTATAAACTCAGAGAACATCAAATGAAGATGTATAGCACAA  600

seq1  CCATTTTGTGCTTGACATTTTACAGGAACATACTGAGAACAAAGGAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGTGCTTGACATTTTACAGGAACATACTGAGAACAAAGGAATAT  650

seq1  ATGCCCATTATAAAAATTGCATTATTTATTGAAGCTTTCTTTGTTTGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCATTATAAAAATTGCATTATTTATTGAAGCTTTCTTTGTTTGATT  700

seq1  CTCTTAAGAAGATATTTTAAATTTGTGAAATTATTTGAGAGTCAATCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAGAAGATATTTTAAATTTGTGAAATTATTTGAGAGTCAATCATA  750

seq1  GGATATGCCTGCAGAAAAAGTTGAGATTTGTCATTCAAAATATAGGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGCCTGCAGAAAAAGTTGAGATTTGTCATTCAAAATATAGGAAAG  800

seq1  AAAATAAGTAAGAATACTTTTTTTTTGAAAATAAGTGAAACTCAATTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTAAGAATACTTTTTTTTTGAAAATAAGTGAAACTCAATTCAA  850

seq1  CTAGAACAATGTGTAGACCCAGGTATTCGATTATTCTTCCAATGTCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACAATGTGTAGACCCAGGTATTCGATTATTCTTCCAATGTCTCTT  900

seq1  ATCAGCAGTTAGTGACTGATTCTAGAGAGAGGTCTGAGGTAATTTTCCAG  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCAGCAGTTAGTGACTGATTCTAGAGAGAGGTCTGAGGT-ATTTTCCAG  949

seq1  AATTTCCAGGTGCAATACAGACAAAGTCAGGTCAATGCCTTAGGCATGCC  1000
       ||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  -ATTTCCAGGTGCAATACAGAC-AAGTCAGGTCAATGCCTTA-GCATGCC  996

seq1  ACTAAAATTGATCCACCATGTTTTAAAATAATCACTGACAGACCCTGGGT  1050
      ||||||| ||||||||||||||||||||| |||||||| |||||||||||
seq2  ACTAAAA-TGATCCACCATGTTTTAAAAT-ATCACTGA-AGACCCTGGGT  1043

seq1  GGGGTACTAATAACTGTTGTCCCTAACCATCCATACACTCACATCTAC-T  1099
      |||||||||||||||||||| ||||  ||| ||||||||||||||||| |
seq2  GGGGTACTAATAACTGTTGTTCCTA--CAT-CATACACTCACATCTACTT  1090

seq1  GTGTGTCAAGATAATTTTCCTCTGTCCCCTAATGTTTTCAGAATTGTGGT  1149
      ||||||| |||||  || |||||||||    ||||||   |||||   | 
seq2  GTGTGTC-AGATA--TTCCCTCTGTCC---TATGTTT--CGAATT---GA  1129

seq1  TAATGAACGGTCATAGC  1166
      | |||||| ||||||||
seq2  TTATGAAC-GTCATAGC  1145