BAC Information

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BAC

Clone NameB6Ng01-137I21
Chromosome14 (Build37)
Map Location 66,387,640 - 66,550,128
singlet/doubletdoublet
Overlap genePbk, Esco2, Ccdc25, Scara3
Upstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5
Downstream geneClu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137I21.bB6Ng01-137I21.g
ACCDH937045DH937046
length1,1651,033
definitionDH937045|Mus musculus domesticus DNA, BAC clone: B6Ng01-137I21, 5' end.DH937046|Mus musculus domesticus DNA, BAC clone: B6Ng01-137I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,548,960 - 66,550,128)(66,387,640 - 66,388,708)
sequence
gaattctgagagcatgcatgacttggttctgcaggtcatgggcctacagc
tacagctggacaacatctcttcctttttggatgaccatgaggagaacatg
catgacctccaataccacacccgatatgcccagaatcgcacagtggaaag
gttcgagtctctggaaggacgtatggcttctcatgagattgaaatcggca
ctatcttcaccaatatcaatgccaccgacaaccacgtgcacagcatgctc
aagtacctggacgacgtgcggctgtcttgcacactgggcttccacaccca
tgctgaagagctctactacctgaataaatccgtctccctcatgctgggca
ccacagatctgctcagggagcgcttcagtctgctcagtgcccggttagac
ttcaatgtccgaaacctctccatgatcatggaggaaatgaaggctgtgga
cacacaccacggagaaatccttcgcaatgtcaccgtcatccgaggtaaga
ggagggctgggcagacctctccagggactctggttattgttgaatacaag
agcatctgatgttagggaaatctccaagagtgtgtccattagatagagga
tgctagaaagaagatgctagataggaaaatagattgccaaaatcatcctt
taaccaattcccagggcagcaggcaactctaagaaatgcctttgaggatc
tggagcgatggctcagtgattaaaccacacgctgctcttccagaggcccc
ggttcagttccctgcacccacataaagaggctgacacttgtcacgctaac
ttcaggagatccaaagccctcttctggactccacaggtacatgcacacat
gtgctatacacaaataaaaaataaataatttttagtgtttaagaaattct
aagctaagcttagtggtgcacacctgtatcccaacacttaggaagctgct
gaggcaggagaattatcatgaactcgagccagcttgggctatgcagtaag
tcagaaattataagcaaagtcttcatcttcaacaaatgagcaattaaaga
agaaggaggggagggaaggcagcgagctcttgtagaactctttagtgcag
gtggatctggtttcttaacttggctttcatagacatctgttttaatccat
ggcctctttttgtcc
gaattctcctccctccacctatagctttagagctaaggtggattctacct
gtcagacccttcctattcatccttctccaccaagtagaataggcaaagca
gctttcaagaagaacagttactctctcctgggggagaccttgagctgttg
ggagctattaagacaacactattgtcctgatctctgaattgggcctctcc
ccccgagaagaaaagggggtcaaaagcgggccaccgacgcaccactccga
gaacaaccacagtttgttccagccctaagtcagtgccagatgtcctgacc
tcaagatgtaccctgatactgccaagttcctgcttccctgtgtagtcacc
aaaagaaaaatttctgctgacccatccctcctgctgagaagtacttcctc
tttttccgatgccccatccctcctgctgaggtgcatttcccctgccccat
tcctcctgctgagaagtacttcctctttgcttgtgcatttaaaccttgag
ccttgctaatacattgggaccttgatgctactcagactgcttccatgtgt
cgttcattgcacaagcttctcgtctctctctatcccccatttggttctta
ggagaaggtcccctagagaccctcaaataacttgacctgctggacgggtc
attgagtgagtccaaatggagtcagtagtgtatgctctagtcttaggtct
ttctttagaagttgtatcagagccgggtgcagtggcgcacgcctttaatc
ccagcacttggaaagacaggggcaggcagatttctgagttcaaggccagc
ctggtctacaaagtgagttccaggacaaccaggcgacacagagaaaccct
gtctcgaaaaaaaaaaaaataataagagagagagagagagagagagagag
agagagagagtgtatcacacatgagctcacatatgtgctgatcactgctg
agctactgactagagttttctgctgtgaacagacactttgaccaagcacc
tctataaagaacaacatttatggggctggctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_66548960_66550128
seq2: B6Ng01-137I21.b_48_1212 (reverse)

seq1  GGACAAAAAGAAAGCCATGGA-TAAAACAGAATTGTCTATGAAAGGCAAA  49
      |||||||||| | |||||||| |||||||||  |||||||||||| ||| 
seq2  GGACAAAAAG-AGGCCATGGATTAAAACAGA--TGTCTATGAAAGCCAAG  47

seq1  GTTAGAAACCAGAT-CACCTGCACT-AAGAGGTCTACAAGAGCCTCGCTG  97
       | ||||||||||| |||||||||| ||||| |||||||||| |||||||
seq2  TTAAGAAACCAGATCCACCTGCACTAAAGAGTTCTACAAGAG-CTCGCTG  96

seq1  CC-TCCCTCCCCTTCCTTTCTTCTTTAATTTGCTCATTTTGTTG-AGATG  145
      || ||||||||||  | ||||||||||| ||||||| ||||||| |||||
seq2  CCTTCCCTCCCCT--CCTTCTTCTTTAA-TTGCTCA-TTTGTTGAAGATG  142

seq1  -AGACTTTTGCCTTAT-ATTTCTGACTTACTGCATAGCCCAAGCTGGCCT  193
       |||||||   ||||| |||||||||||||||||||||||||||||| ||
seq2  AAGACTTT--GCTTATAATTTCTGACTTACTGCATAGCCCAAGCTGG-CT  189

seq1  CGAGTTCATGATAATTCTCCTGCCTCAGCAGCTTCCTAAGTGTTGGGATT  243
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CGAGTTCATGATAATTCTCCTGCCTCAGCAGCTTCCTAAGTGTTGGGA-T  238

seq1  ACAGGTGTGCACCACTAAGCTTAGCTTAGAATTTCTTAAACACTAAAAAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGTGCACCACTAAGCTTAGCTTAGAATTTCTTAAACACTAAAAAT  288

seq1  TATTTA-TTTTTATTTGTGTATAGCACATGTGTGCATGTACCTGTGGAGT  342
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTTTATTTGTGTATAGCACATGTGTGCATGTACCTGTGGAGT  338

seq1  CCAGAAGAGGGCTTTGGATCTCCTGAAGTTAGCGTGACAAGTGTCAGCCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAGGGCTTTGGATCTCCTGAAGTTAGCGTGACAAGTGTCAGCCT  388

seq1  CTTTATGTGGGTGCAGGGAACTGAACCGGGGCCTCTGGAAGAGCAGCGTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTGGGTGCAGGGAACTGAACCGGGGCCTCTGGAAGAGCAGCGTG  438

seq1  TGGTTTAATCACTGAGCCATCGCTCCAGATCCTCAAAGGCATTTCTTAGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAATCACTGAGCCATCGCTCCAGATCCTCAAAGGCATTTCTTAGA  488

seq1  GTTGCCTGCTGCCCTGGGAATTGGTTAAAGGATGATTTTGGCAATCTATT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTGCTGCCCTGGGAATTGGTTAAAGGATGATTTTGGCAATCTATT  538

seq1  TTCCTATCTAGCATCTTCTTTCTAGCATCCTCTATCTAATGGACACACTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATCTAGCATCTTCTTTCTAGCATCCTCTATCTAATGGACACACTC  588

seq1  TTGGAGATTTCCCTAACATCAGATGCTCTTGTATTCAACAATAACCAGAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATTTCCCTAACATCAGATGCTCTTGTATTCAACAATAACCAGAG  638

seq1  TCCCTGGAGAGGTCTGCCCAGCCCTCCTCTTACCTCGGATGACGGTGACA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGAGAGGTCTGCCCAGCCCTCCTCTTACCTCGGATGACGGTGACA  688

seq1  TTGCGAAGGATTTCTCCGTGGTGTGTGTCCACAGCCTTCATTTCCTCCAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGAAGGATTTCTCCGTGGTGTGTGTCCACAGCCTTCATTTCCTCCAT  738

seq1  GATCATGGAGAGGTTTCGGACATTGAAGTCTAACCGGGCACTGAGCAGAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGGAGAGGTTTCGGACATTGAAGTCTAACCGGGCACTGAGCAGAC  788

seq1  TGAAGCGCTCCCTGAGCAGATCTGTGGTGCCCAGCATGAGGGAGACGGAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCGCTCCCTGAGCAGATCTGTGGTGCCCAGCATGAGGGAGACGGAT  838

seq1  TTATTCAGGTAGTAGAGCTCTTCAGCATGGGTGTGGAAGCCCAGTGTGCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGGTAGTAGAGCTCTTCAGCATGGGTGTGGAAGCCCAGTGTGCA  888

seq1  AGACAGCCGCACGTCGTCCAGGTACTTGAGCATGCTGTGCACGTGGTTGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCGCACGTCGTCCAGGTACTTGAGCATGCTGTGCACGTGGTTGT  938

seq1  CGGTGGCATTGATATTGGTGAAGATAGTGCCGATTTCAATCTCATGAGAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGCATTGATATTGGTGAAGATAGTGCCGATTTCAATCTCATGAGAA  988

seq1  GCCATACGTCCTTCCAGAGACTCGAACCTTTCCACTGTGCGATTCTGGGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACGTCCTTCCAGAGACTCGAACCTTTCCACTGTGCGATTCTGGGC  1038

seq1  ATATCGGGTGTGGTATTGGAGGTCATGCATGTTCTCCTCATGGTCATCCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGGGTGTGGTATTGGAGGTCATGCATGTTCTCCTCATGGTCATCCA  1088

seq1  AAAAGGAAGAGATGTTGTCCAGCTGTAGCTGTAGGCCCATGACCTGCAGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGAGATGTTGTCCAGCTGTAGCTGTAGGCCCATGACCTGCAGA  1138

seq1  ACCAAGTCATGCATGCTCTCAGAATTC  1169
      |||||||||||||||||||||||||||
seq2  ACCAAGTCATGCATGCTCTCAGAATTC  1165

seq1: chr14_66387640_66388708
seq2: B6Ng01-137I21.g_69_1101

seq1  GAATTCTCCTCCCTCCACCTATAGCTTTAGAGCTAAGGTGGATTCTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCCCTCCACCTATAGCTTTAGAGCTAAGGTGGATTCTACCT  50

seq1  GTCAGACCCTTCCTATTCATCCTTCTCCACCAAGTAGAATAGGCAAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACCCTTCCTATTCATCCTTCTCCACCAAGTAGAATAGGCAAAGCA  100

seq1  GCTTTCAAGAAGAACAGTTACTCTCTCCTGGGGGAGACCTTGAGCTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAGAAGAACAGTTACTCTCTCCTGGGGGAGACCTTGAGCTGTTG  150

seq1  GGAGCTATTAAGACAACACTATTGTCCTGATCTCTGAATTGGGCCTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTATTAAGACAACACTATTGTCCTGATCTCTGAATTGGGCCTCTCC  200

seq1  CCCCGAGAAGAAAAGGGGGTCAAAAGCGGGCCACCGACGCACCACTCCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAGAAGAAAAGGGGGTCAAAAGCGGGCCACCGACGCACCACTCCGA  250

seq1  GAACAACCACAGTTTGTTCCAGCCCTAAGTCAGTGCCAGATGTCCTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACCACAGTTTGTTCCAGCCCTAAGTCAGTGCCAGATGTCCTGACC  300

seq1  TCAAGATGTACCCTGATACTGCCAAGTTCCTGCTTCCCTGTGTAGTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATGTACCCTGATACTGCCAAGTTCCTGCTTCCCTGTGTAGTCACC  350

seq1  AAAAGAAAAATTTCTGCTGACCCATCCCTCCTGCTGAGAAGTACTTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAATTTCTGCTGACCCATCCCTCCTGCTGAGAAGTACTTCCTC  400

seq1  TTTTTCCGATGCCCCATCCCTCCTGCTGAGGTGCATTTCCCCTGCCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCGATGCCCCATCCCTCCTGCTGAGGTGCATTTCCCCTGCCCCAT  450

seq1  TCCTCCTGCTGAGAAGTACTTCCTCTTTGCTTGTGCATTTAAACCTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGCTGAGAAGTACTTCCTCTTTGCTTGTGCATTTAAACCTTGAG  500

seq1  CCTTGCTAATACATTGGGACCTTGATGCTACTCAGACTGCTTCCATGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTAATACATTGGGACCTTGATGCTACTCAGACTGCTTCCATGTGT  550

seq1  CGTTCATTGCACAAGCTTCTCGTCTCTCTCTATCCCCCATTTGGTTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCATTGCACAAGCTTCTCGTCTCTCTCTATCCCCCATTTGGTTCTTA  600

seq1  GGAGAAGGTCCCCTAGAGACCCTCAAATAACTTGACCTGCTGGACGGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGTCCCCTAGAGACCCTCAAATAACTTGACCTGCTGGACGGGTC  650

seq1  ATTGAGTGAGTCCAAATGGAGTCAGTAGTGTATGCTCTAGTCTTAGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTGAGTCCAAATGGAGTCAGTAGTGTATGCTCTAGTCTTAGGTCT  700

seq1  TTCTTTAGAAGTTGTATCAGAGCCGGGTGCAGTGGCGCACGCCTTTAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGAAGTTGTATCAGAGCCGGGTGCAGTGGCGCACGCCTTTAATC  750

seq1  CCAGCACTTGG-AAGACAGGGGCAGGCAGATTTCTGAGTTCAAGGCCAGC  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTGGAAAGACAGGGGCAGGCAGATTTCTGAGTTCAAGGCCAGC  800

seq1  CTGGTCTACAAAGTGAGTTCCAGGACAACCAGGGCGACACAGAGAAACCC  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGGTCTACAAAGTGAGTTCCAGGACAACCA-GGCGACACAGAGAAACCC  849

seq1  TGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGAA  899
      |||||| |||||||||||                           || ||
seq2  TGTCTCGAAAAAAAAAAA---------------------------AATAA  872

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTGTATCAACCAC  949
       ||||   |||   |||   |||   |||   |||   |||||||  |||
seq2  TAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTATCA--CAC  920

seq1  ATGAGCTTCACATATGTGCTGATCACTGCTGAGCTACTGACTTAGAGTTT  999
      |||||| |||||||||||||||||||||||||||||||||| ||||| ||
seq2  ATGAGC-TCACATATGTGCTGATCACTGCTGAGCTACTGAC-TAGAG-TT  967

seq1  TTCTGCTGTGAACAGACACTTTGACCAAGGCAACTCTTATAAAGGACAAC  1049
      |||||||||||||||||||||||||||| ||| ||| ||||||| |||||
seq2  TTCTGCTGTGAACAGACACTTTGACCAA-GCACCTC-TATAAAGAACAAC  1015

seq1  ATTTAATTGGGGCTGGCTTA  1069
      |||||  |||||||||||||
seq2  ATTTA--TGGGGCTGGCTTA  1033