BAC Information

Click to search

BAC

Clone NameB6Ng01-138J20
Chromosome14 (Build37)
Map Location 70,512,019 - 70,513,105
singlet/doubletsinglet
Overlap geneBin3
Upstream geneStc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3
Downstream gene2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138J20.g
ACCDH937824
length1,072
definitionDH937824|Mus musculus domesticus DNA, BAC clone: B6Ng01-138J20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacttttcccttgagaaaatgatactgactctggcgcgcgaagag
acaaagaccgaacagccaggagaggaataaagacacagaagtgtgcaagc
agatgagtaagaaagacgcaggttatcctcgattttccgttccgtttgtt
tacttccaatttttatctttgaagcctttttttacacgtaagttttcact
ttcacatctatttatatattttttttctttaaaaagggatgcaaaattca
atactcactggccagcaaatccctaacatctctgagagatcaaatatagt
caagggaaagaggaccacagcaaagtctgagagattgaacatagtcaagg
gaaagagggccacagtaaagtctgagagattgaacatagtcaagggaaag
aggaccacagtaaagtcaggagggtgaaatgcgtgtccacagccaagtgc
caagacatgcccctccctgcctgccagcacacatgggcgcacacaccctg
ctccatccaccagcttcccagaatgctgagcagggtcgcctttattccca
gtgaggagacgtgtgggctcttcccttcccaggagaaaaaaacctacata
tcaagaagatccccacaaaaatgttagtcagatggctcttcatgtttaac
caacatgctatgcacttcagaattctcttttgtccccaagtcacacatgt
gaggcttccgaggaagacgcgtcagaccaatcataaagactagaaagaaa
gagactggaaagggagaagaaactttaagctgctacagtccacagagaga
tgagccaactggaaaaatcaaaacaacaccacaaaagacagtcaaaaagg
tcaagctctgagattaaaaatatgctagtggggaaaatacagaagaaaac
ctggatttggtctcagcactgagtggtggtggtagccacatgttttatag
tgtcattattattacatgggtttcttttgcaaaacaactgaataaaccat
gtcctctggataagtcataagtaaaactgatagcagaaatgccacaaatg
ttgaaagcagagaaatcagaaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_70512019_70513105
seq2: B6Ng01-138J20.g_67_1138

seq1  GAATTCACTTTTCCCTTGAGAAAATGATACTGACTCTGGCGCGCGAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTCCCTTGAGAAAATGATACTGACTCTGGCGCGCGAAGAG  50

seq1  ACAAAGACCGAACAGCCAGGAGAGGAATAAAGACACAGAAGTGTGCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACCGAACAGCCAGGAGAGGAATAAAGACACAGAAGTGTGCAAGC  100

seq1  AGATGAGTAAGAAAGACGCAGGTTATCCTCGATTTTCCGTTCCGTTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGTAAGAAAGACGCAGGTTATCCTCGATTTTCCGTTCCGTTTGTT  150

seq1  TACTTCCAATTTTTATCTTTGAAGCCTTTTTTTACACGTAAGTTTTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCAATTTTTATCTTTGAAGCCTTTTTTTACACGTAAGTTTTCACT  200

seq1  TTCACATCTATTTATATATTTTTTTTCTTTAAAAAGGGATGCAAAATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCTATTTATATATTTTTTTTCTTTAAAAAGGGATGCAAAATTCA  250

seq1  ATACTCACTGGCCAGCAAATCCCTAACATCTCTGAGAGATCAAATATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCACTGGCCAGCAAATCCCTAACATCTCTGAGAGATCAAATATAGT  300

seq1  CAAGGGAAAGAGGACCACAGCAAAGTCTGAGAGATTGAACATAGTCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAAAGAGGACCACAGCAAAGTCTGAGAGATTGAACATAGTCAAGG  350

seq1  GAAAGAGGGCCACAGTAAAGTCTGAGAGATTGAACATAGTCAAGGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGGCCACAGTAAAGTCTGAGAGATTGAACATAGTCAAGGGAAAG  400

seq1  AGGACCACAGTAAAGTCAGGAGGGTGAAATGCGTGTCCACAGCCAAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCACAGTAAAGTCAGGAGGGTGAAATGCGTGTCCACAGCCAAGTGC  450

seq1  CAAGACATGCCCCTCCCTGCCTGCCAGCACACATGGGCGCACACACCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACATGCCCCTCCCTGCCTGCCAGCACACATGGGCGCACACACCCTG  500

seq1  CTCCATCCACCAGCTTCCCAGAATGCTGAGCAGGGTCGCCTTTATTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCCACCAGCTTCCCAGAATGCTGAGCAGGGTCGCCTTTATTCCCA  550

seq1  GTGAGGAGACGTGTGGGCTCTTCCCTTCCCAGGAGAAAAAAACCTACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAGACGTGTGGGCTCTTCCCTTCCCAGGAGAAAAAAACCTACATA  600

seq1  TCAAGAAGATCCCCACAAAAATGTTAGTCAGATGGCTCTTCATGTTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGATCCCCACAAAAATGTTAGTCAGATGGCTCTTCATGTTTAAC  650

seq1  CAACATGCTATGCACTTCAGAATTCTCTTTTGTCCCCAAGTCACACATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGCTATGCACTTCAGAATTCTCTTTTGTCCCCAAGTCACACATGT  700

seq1  GAGGCTTCCGAGGAAGACGCGTCAGACCAATCATAAAGACTAGAAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTCCGAGGAAGACGCGTCAGACCAATCATAAAGACTAGAAAGAAA  750

seq1  GAGACTGGAAAGGGAGAAGAAACTTTAAGCTGCTACAGTCCACAGAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGGAAAGGGAGAAGAAACTTTAAGCTGCTACAGTCCACAGAGAGA  800

seq1  TGAGCCAACTGGAAAAATCAAAACAACACCACAAAAGACAGTCAAAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAACTGGAAAAATCAAAACAACACCACAAAAGACAGTCAAAAAGG  850

seq1  TCAAGCTCTGAGATTAAAAATATGCTAGTGGGGAAAATACAGAAGAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTCTGAGATTAAAAATATGCTAGTGGGGAAAATACAGAAGAAAAC  900

seq1  CTGGGATTTGGCCTCAGCACTGAGGTGGTGGTGGTAGCCACATGTTTTAT  950
      || |||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  CT-GGATTTGGTCTCAGCACTGA-GTGGTGGTGGTAGCCACATGTTTTAT  948

seq1  AAGTTGTCATTATTATTAACAATTGGGTTTCTTTTTGCAAAACACACTGA  1000
      |   ||||||||||||| |||  |||||||| |||||||||||| |||||
seq2  A--GTGTCATTATTATT-ACA--TGGGTTTC-TTTTGCAAAACA-ACTGA  991

seq1  ATTAAAACCATGT-CTCTGGGATTAAAGTCATTAAGTAAAACCTGATAGC  1049
      ||  ||||||||| |||| ||||  |||||| ||||||||| ||||||||
seq2  AT--AAACCATGTCCTCT-GGAT--AAGTCA-TAAGTAAAA-CTGATAGC  1034

seq1  AGAAATG-CACAAATGTAGAAAAGCAGAGAAATCAGAAA  1087
      ||||||| ||||||||| | |||||||||||||||||||
seq2  AGAAATGCCACAAATGTTG-AAAGCAGAGAAATCAGAAA  1072