BAC Information

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BAC

Clone NameB6Ng01-139A11
Chromosome14 (Build37)
Map Location 121,302,209 - 121,303,261
singlet/doubletsinglet
Overlap genenone
Upstream geneOxgr1, Gabarapl2-ps, LOC100043831, Mbnl2, Rap2a, LOC668835, LOC668837
Downstream geneRanbp5, Farp1, LOC100043837, Stk24, Slc15a1, LOC100043577, Dock9, LOC668843, Phgdhl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139A11.bB6Ng01-139A11.g
ACCDH938118DH938119
length1,1921,045
definitionDH938118|Mus musculus domesticus DNA, BAC clone: B6Ng01-139A11, 5' end.DH938119|Mus musculus domesticus DNA, BAC clone: B6Ng01-139A11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtacc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgaggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagtacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgattcgca
ttcttctacacgataacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctttt
atccttgagaagactttttgctatcctaggttttttgttattccagatga
atttgcaaattgctccttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatcttttcatcttc
tgagatcttctttaatttctttcttcagagatttgaagttttatcataca
gatctttcacttccttagttagagtcacgccaagatatttatatattgtg
actattgagaagggtgtgtttccctaatttcttctcagcctgttattctt
gtataggagaaagccattgacttgtttgagttattttatatccagctact
cacgagcttgttttcaggttaggggtctctgggagagttagggtcactat
aatactgtcaatcattgcaaaaggaatttgacctcccttttcaatggatc
ctgaatccttaggttgcgaattgctcgcgaatcatcaggact
gaattctttcctctcaagttgcttttggtgacggtgtttatactgagcag
cagaaagaaagctaacgtgggtaatgaagaggttcatgaatacagcagtg
gtagtgggtgtacaattgtaaatatcctaagctaaaacaattgtatactt
taaaggccaaaattaggtggggaggacacgtgtaagccaatccatgcaca
tgcagtaggtagccaggcgtagtgatgcacaggcaagcagatctccgagt
tcgaggccagcctgggctacacagcaattttcagcacagccagtgctgtt
acacagagaaaccctctctcggaaaaccaaactaaaccaagcaagcaagg
aagcaaacccccccaccaccaccaccaaacaaaaaccaaccaaccaaaca
aacaaacccaaatccccaaatgtcatttaaaaacatattgacctagggct
gatggtccacacaatgagtcacagctctcagaaggtaaaggctgatctct
ctgagtttcaaacaaaaccaaaaatcttccctattaaaaaccccaaacca
gagccgggcagtggtggcgcacacctttaaccccagtactcgggaggcag
aggcaggcagatttctgagtttgaggccagcctggtctacagagtgagtt
tccaggatagccagggctacacagagaaaccctgtctcgaaaaacaaaca
aacaaaaacaaaacaaacaaaacaaaacaaaacaaaaaaaacccaaacca
aaaatgaaatgaagaaatctcttgtctatgatacatggattatattccaa
tagctattactttaaaatactttacaaacttgaaggcaattgatcttgac
cttattcaatcctttttttaaatcttttaacatatttttttcttatgtca
gaatgtatgactggcagcattcataaccctcaactctctgaacattccat
gtcagtatttgggaaaaacagaaggaccacttgtaccagactcaggctag
tgccttgttggtttggggtttttgttttatggttttttctccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_121302209_121303261
seq2: B6Ng01-139A11.g_69_1113 (reverse)

seq1  AAAGAAGAAAAAACAAAAAAACAAAAAACCCCCAAAACAAACAAAGCACA  50
      |||| ||||||||| | ||||||||||   ||| |||| ||||| |||| 
seq2  AAAGGAGAAAAAACCATAAAACAAAAA---CCCCAAACCAACAAGGCAC-  46

seq1  TAGCCTGAGTCTTGCTAC-AGTGGTCCCTTCTGTTTTTCCCCAAATACTG  99
      ||||||||||| || ||| |||||| |||||||||||| |||||||||||
seq2  TAGCCTGAGTC-TGGTACAAGTGGT-CCTTCTGTTTTT-CCCAAATACTG  93

seq1  ACATGGGAATGTTCAGAGAGTTGAGGGTTATGAATGCTGCCAGTCATACA  149
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAT-GGAATGTTCAGAGAGTTGAGGGTTATGAATGCTGCCAGTCATACA  142

seq1  TTCTGAACATAAGAAAAAATATTGTTAAAAGATTTAAAAAAAGGATTGAA  199
      ||||| |||||||||||||   ||||||||||||||||||||||||||||
seq2  TTCTG-ACATAAGAAAAAAATATGTTAAAAGATTTAAAAAAAGGATTGAA  191

seq1  TAAGGTCAAGATCAATTGCCTTCAAGTTTGTAAAGTATTTTAAAGTAATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCAAGATCAATTGCCTTCAAGTTTGTAAAGTATTTTAAAGTAATA  241

seq1  GCTATTGGAATATAATCCATGTATCATAGACAAGAGATTTCTTCATTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGGAATATAATCCATGTATCATAGACAAGAGATTTCTTCATTTCA  291

seq1  TTTTTGGTTTGGGTTTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTT  349
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTTGGTTTGGGTTTTTTTTGTTTTGTTTTGTTTTG-TTTGTTTTGTTT  340

seq1  TTGTTTGTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTATC  390

seq1  CTGG-AACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCC  448
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCC  440

seq1  TGCCTCTGCCTCCCGAGTACTGGGGTTAAAGGTGTGCGCCACCACTGCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCGAGTACTGGGGTTAAAGGTGTGCGCCACCACTGCCC  490

seq1  GGCTCTGGTTTGGGGTTTTTAATAGGGAAGATTTTTGGTTTTGTTTGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGGTTTGGGGTTTTTAATAGGGAAGATTTTTGGTTTTGTTTGAAA  540

seq1  CTCAGAGAGATCAGCCTTTACCTTCTGAGAGCTGTGACTCATTGTGTGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAGATCAGCCTTTACCTTCTGAGAGCTGTGACTCATTGTGTGGA  590

seq1  CCATCAGCCCTAGGTCAATATGTTTTTAAATGACATTTGGGGATTTGGGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGCCCTAGGTCAATATGTTTTTAAATGACATTTGGGGATTTGGGT  640

seq1  TTGTTTGTTTGGTTGGTTGGTTTTTGTTTGGTGGTGGTGGTGGGGGGGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGGTTGGTTGGTTTTTGTTTGGTGGTGGTGGTGGGGGGGTT  690

seq1  TGCTTCCTTGCTTGCTTGGTTTAGTTTGGTTTTCCGAGAGAGGGTTTCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTTGCTTGCTTGGTTTAGTTTGGTTTTCCGAGAGAGGGTTTCTC  740

seq1  TGTGTAACAGCACTGGCTGTGCTGAAAATTGCTGTGTAGCCCAGGCTGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACAGCACTGGCTGTGCTGAAAATTGCTGTGTAGCCCAGGCTGGC  790

seq1  CTCGAACTCGGAGATCTGCTTGCCTGTGCATCACTACGCCTGGCTACCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAACTCGGAGATCTGCTTGCCTGTGCATCACTACGCCTGGCTACCTA  840

seq1  CTGCATGTGCATGGATTGGCTTACACGTGTCCTCCCCACCTAATTTTGGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTGCATGGATTGGCTTACACGTGTCCTCCCCACCTAATTTTGGC  890

seq1  CTTTAAAGTATACAATTGTTTTAGCTTAGGATATTTACAATTGTACACCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGTATACAATTGTTTTAGCTTAGGATATTTACAATTGTACACCC  940

seq1  ACTACCACTGCTGTATTCATGAACCTCTTCATTACCCACGTTAGCTTTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCACTGCTGTATTCATGAACCTCTTCATTACCCACGTTAGCTTTCT  990

seq1  TTCTGCTGCTCAGTATAAACACCGTCACCAAAAGCAACTTGAGAGGAAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGCTCAGTATAAACACCGTCACCAAAAGCAACTTGAGAGGAAAG  1040

seq1  AATTC  1053
      |||||
seq2  AATTC  1045