BAC Information

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BAC

Clone NameB6Ng01-139D17
Chromosome14 (Build37)
Map Location 109,833,631 - 109,834,707
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139D17.bB6Ng01-139D17.g
ACCDH938270DH938271
length1,065893
definitionDH938270|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D17, 5' end.DH938271|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagagtgtaaaaacagccttgttttctgcagaatccacttgaatg
caaacattggggctgtaatctaagattctgatttagcagctcttgttaca
atataggatttcataaccctccaaaattcatgcaccactcagaaataaat
gatggaagagctcattattaatagtttcatgcatgaaagaagcatgatta
cataatttgaagacagaagtcagatgcaatccgacacctaagctggtggt
ttattggttcattgtaaagttggtaagtattgaatgaaccacctttcatg
caaggcctcattctacatggggcaggtaatattttgaagcttgtacaatg
cctacagttcaaatctatcaatgtgtctgttctcctcaaaaggaaatatt
tgtaacactatttcatgaactactcagtgctcatgaaaaaatcataaact
ggtgaaaaatacctgagctctactaaagtaagacaaataggatcttgcat
tccattacatgaaaaagggagaatagcatttatttagaatctctgtaaag
attctagcacagatgggattcccatgcccaagagggggccagaacaggag
caatgagataaatttggtgggagtaagtgagctatgggtacctgtttgga
ttccacaatgttatcacttgattgttttttgtgaatgggagatcattacc
ttgaaagttacagaaatatctgttactaatactataaatggcaactatct
tttcagctgagggcatatatatatatatatatccatgtgtgtgttcacat
ctttgtctaaaatgctacacaagtttaacagatcagctttttggatcttt
aattttatcctcaaattccataatgtaatggtgatgatttataaggaaac
cataaattgataaattatatatatatataatttggatgatgattacagaa
atagtttagcatgatagacaatacataaaggaaaggcgataagtacacgg
agaataaagaatcatttacttaaaagaaatcatagaatcagtcttttaga
cttaactttgcccat

gaattctccactaaacctatcagtatcaggtcctgggctttttttttttt
ttttttttttttggttaggagactattaatgactgattctatttctttag
gggttatgggactgtttagattgtttatctatttctgttttagctttggc
accttgtatgtgtctattaaaatgattagttcatgagattcttaggcaaa
tggatagatcctgaaagtatcatcttgagtatagtaacccaatcatctca
aaagaacacacatggtatgcactcactgaaaagtggatattagcctaaag
cttcatataaccaggataaaattcacagaccacatgaagcctaataagaa
ggaagagcaaagtgtggatgctttggtccttcttagaaggagaacaaaat
actaacaggcacatatatggtgataaagtgttgagtggagactgaaggaa
aggctgcccagagactgtcccacttggggatttatttcatatacagttat
caaacccagacactattgtggatgccaagaagtgcatgctgaaaggaaca
gatatggctgtctcccaagaggccctaccagagcattagaaatacagaag
cagatgtttgcggccaaatattggtctgagcatggggtctccaatatagg
agttagggaaaagactgtaggagttgaaggggttgcaaccccataggaag
aataacaatatcagtcagcctttccccccagaaaggtgagtgggtgggtg
gaggaacaccctcatagtgtcagggtaggagtgtgtgctagggtgtttct
gggattgagagaaactggaaagatgatacattttgaatataaataaacaa
aattcgaaataaaaatttatattatctttggcatagatttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109833631_109834707
seq2: B6Ng01-139D17.b_48_1112

seq1  GAATTCAGAGTGTAAAAACAGCCTTGTTTTCTGCAGAATCCACTTGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTGTAAAAACAGCCTTGTTTTCTGCAGAATCCACTTGAATG  50

seq1  CAAACATTGGGGCTGTAATCTAAGATTCTGATTTAGCAGCTCTTGTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTGGGGCTGTAATCTAAGATTCTGATTTAGCAGCTCTTGTTACA  100

seq1  ATATAGGATTTCATAACCCTCCAAAATTCATGCACCACTCAGAAATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGATTTCATAACCCTCCAAAATTCATGCACCACTCAGAAATAAAT  150

seq1  GATGGAAGAGCTCATTATTAATAGTTTCATGCATGAAAGAAGCATGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAGAGCTCATTATTAATAGTTTCATGCATGAAAGAAGCATGATTA  200

seq1  CATAATTTGAAGACAGAAGTCAGATGCAATCCGACACCTAAGCTGGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTGAAGACAGAAGTCAGATGCAATCCGACACCTAAGCTGGTGGT  250

seq1  TTATTGGTTCATTGTAAAGTTGGTAAGTATTGAATGAACCACCTTTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGTTCATTGTAAAGTTGGTAAGTATTGAATGAACCACCTTTCATG  300

seq1  CAAGGCCTCATTCTACATGGGGCAGGTAATATTTTGAAGCTTGTACAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCTCATTCTACATGGGGCAGGTAATATTTTGAAGCTTGTACAATG  350

seq1  CCTACAGTTCAAATCTATCAATGTGTCTGTTCTCCTCAAAAGGAAATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGTTCAAATCTATCAATGTGTCTGTTCTCCTCAAAAGGAAATATT  400

seq1  TGTAACACTATTTCATGAACTACTCAGTGCTCATGAAAAAATCATAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACACTATTTCATGAACTACTCAGTGCTCATGAAAAAATCATAAACT  450

seq1  GGTGAAAAATACCTGAGCTCTACTAAAGTAAGACAAATAGGATCTTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAAATACCTGAGCTCTACTAAAGTAAGACAAATAGGATCTTGCAT  500

seq1  TCCATTACATGAAAAAGGGAGAATAGCATTTATTTAGAATCTCTGTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTACATGAAAAAGGGAGAATAGCATTTATTTAGAATCTCTGTAAAG  550

seq1  ATTCTAGCACAGATGGGATTCCCATGCCCAAGAGGGGGCCAGAACAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGCACAGATGGGATTCCCATGCCCAAGAGGGGGCCAGAACAGGAG  600

seq1  CAATGAGATAAATTTGGTGGGAGTAAGTGAGCTATGGGTACCTGTTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGATAAATTTGGTGGGAGTAAGTGAGCTATGGGTACCTGTTTGGA  650

seq1  TTCCACAATGTTATCACTTGATTGTTTTTTGTGAATGGGAGATCATTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAATGTTATCACTTGATTGTTTTTTGTGAATGGGAGATCATTACC  700

seq1  TTGAAAGTTACAGAAATATCTGTTACTAATACTATAAATGGCAACTATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTTACAGAAATATCTGTTACTAATACTATAAATGGCAACTATCT  750

seq1  TTTCAGCTGAGGGCATATATATATATATATATCCATGTGTGTGTTCACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTGAGGGCATATATATATATATATATCCATGTGTGTGTTCACAT  800

seq1  CTTTGTCTAAAATGCTACACAAGTTTAACAGATCAGCTTTTTGGATCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTAAAATGCTACACAAGTTTAACAGATCAGCTTTTTGGATCTTT  850

seq1  AATTTTATCCTCAAATTCCATAATGTAATGGTGATGATTTATAAGGAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATCCTCAAATTCCATAATGTAATGGTGATGATTTATAAGGAAAC  900

seq1  CATAAATTGATAAATTATATATATATATAATTTGGATGATGATTAACAGA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CATAAATTGATAAATTATATATATATATAATTTGGATGATGATT-ACAGA  949

seq1  AATAGTTTTAGCATGATAAGACAAATACATAAAGGAAAGGGCGATAAGTA  1000
      ||||| ||||||||||| |||| ||||||||||||||| |||||||||||
seq2  AATAG-TTTAGCATGAT-AGAC-AATACATAAAGGAAA-GGCGATAAGTA  995

seq1  CACGGAGAATAAAAGAAATCATTTACTTAAAAAGAAATCATAGAATCAGT  1050
      |||||||||||||   |||||||||||| |||||||||||||||||||||
seq2  CACGGAGAATAAA--GAATCATTTACTT-AAAAGAAATCATAGAATCAGT  1042

seq1  CTTTTTAGAACTTAAACCTTTGCCCAT  1077
      | |||||| ||||||  ||||||||||
seq2  C-TTTTAG-ACTTAA--CTTTGCCCAT  1065


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