BAC Information

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BAC

Clone NameB6Ng01-140M07
Chromosome14 (Build37)
Map Location 124,370,140 - 124,487,727
singlet/doubletdoublet
Overlap geneItgbl1, Fgf14
Upstream geneTmtc4, Vgcnl1, LOC668700
Downstream geneGA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140M07.bB6Ng01-140M07.g
ACCDH939405DH939406
length1,071915
definitionDH939405|Mus musculus domesticus DNA, BAC clone: B6Ng01-140M07, 5' end.DH939406|Mus musculus domesticus DNA, BAC clone: B6Ng01-140M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,370,140 - 124,371,242)(124,487,116 - 124,487,727)
sequence
gaattctttcatgatacatatgacagtatcatagtcatccacttcccaaa
actgaggtcttctgctgtctattcttgcaagtctttgatcatatgttaat
caacagaagtactcagaatttaaccctgaatctcctctgtgtatttaaag
cttaacgagttggagtttttctaactgcattaaaaacttttattattttg
tattctctcaaggtgactggttacttgagtaacttaggaataactaccag
catcttgtagtaaaagaaaattgtgtccaacaaaaaagtcaaacaaagaa
atggaagaggtccttttgaattctgtatttgtcccactagctgtaccaaa
agtaggttaaccttgtgatttttcaagcctggcttgaaaggcatttatac
caagagaatccttttgagacatcacaaatctatttttttttaattttaag
ttgctagtaatattctctgttaccacaaaatattttaataactaaatagt
ttttaaattaaattcgaggaaaccacataggaagtttatgtggtgggaaa
attgactagaccctattcagaaattttttttttagaactcttgctgattg
tagcaaatcctaaagcacaagcctgagccatcaatcagacatacggaatt
aagtttgcatttttagcatttcaccctgccactcagcatgaagtttgtgt
gttccgatttcaagaaatgcatgtaaatgaaactataaaatgattagctc
aataatttagtaattctttgattgtaaaataaaaatcttcatttgatata
atttcgtagtacattcctgtagagaacagggaccttaaaatgcaattcaa
ttgaaaagaaaaaacaagtcaaccatctattttgataccttttgggagag
catctctaaggtgagcacatcctgtttcatgacatttcaccagactggac
agaacattttgctcagctaattgcacggtctagatctatagaaagctttc
cgatgacttatgtatacagtagtaagctccttctgagaagcagctatcat
aacttttgctgagagatgggt
gaattccatgtattatataagatatataaaatatctatgtaatgtatgtg
tacatatgcaacatatgtatatgagaaagctttggatttgaatgagttat
ctttataatgagaaaataaaatagtcaattttgtaataatttggaaatga
cagtgaaatctctattctgatttttaaaaaaaaaatgaaattagattctt
ctctcatacaatacatctcaaccacagtttcccttccctccactcctcct
agctctacccccaaatccactcctacctggtttcctctgctatacaggag
aaaacaagatataataagtcagggcaaaaaaccttgaatcaaagctagac
aaggcaacctaatttgaggaaaatattctcaaggacatacatacaaaaga
gtgaagcacctgtttccactgttagtagtccctccaagaacactaaggtg
acagctataacatacattcaaaggacctggtggagatgcaagtaggctct
gtccttgctgtttcagtctctgtgagcccatgtgagtcttgcttagttga
tttggtggcatgttctcctagtatgttgatatattcaaaatatattagaa
tccccatgggctcataaataatatctaaaatgttatgtgaatactttatc
ttaagtagctgaagatactttatcatagtatagctccatattgatgtgtt
tcattcaatgacattgaaaaaagagtcacaatgagttggatctttgcctt
tccttcttgggcacatatataaaatgaaatcattattttcaggaagttta
agagaaccatggttacttttttataattgagatttttatttcctatcaat
ggttataggctcatagacaattagaattctgtagaaagtctagcagaaaa
gctgtttgttttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_124370140_124371242
seq2: B6Ng01-140M07.b_46_1116

seq1  GAATTCTTTCATGATACATATGACAGTATCATAGTCATCCACTTCCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATGATACATATGACAGTATCATAGTCATCCACTTCCCAAA  50

seq1  ACTGAGGTCTTCTGCTGTCTATTCTTGCAAGTCTTTGATCATATGTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGTCTTCTGCTGTCTATTCTTGCAAGTCTTTGATCATATGTTAAT  100

seq1  CAACAGAAGTACTCAGAATTTAACCCTGAATCTCCTCTGTGTATTTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAGTACTCAGAATTTAACCCTGAATCTCCTCTGTGTATTTAAAG  150

seq1  CTTAACGAGTTGGAGTTTTTCTAACTGCATTAAAAACTTTTATTATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACGAGTTGGAGTTTTTCTAACTGCATTAAAAACTTTTATTATTTTG  200

seq1  TATTCTCTCAAGGTGACTGGTTACTTGAGTAACTTAGGAATAACTACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCTCAAGGTGACTGGTTACTTGAGTAACTTAGGAATAACTACCAG  250

seq1  CATCTTGTAGTAAAAGAAAATTGTGTCCAACAAAAAAGTCAAACAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTAGTAAAAGAAAATTGTGTCCAACAAAAAAGTCAAACAAAGAA  300

seq1  ATGGAAGAGGTCCTTTTGAATTCTGTATTTGTCCCACTAGCTGTACCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAGGTCCTTTTGAATTCTGTATTTGTCCCACTAGCTGTACCAAA  350

seq1  AGTAGGTTAACCTTGTGATTTTTCAAGCCTGGCTTGAAAGGCATTTATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTTAACCTTGTGATTTTTCAAGCCTGGCTTGAAAGGCATTTATAC  400

seq1  CAAGAGAATCCTTTTGAGACATCACAAATCTATTTTTTTTTAATTTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAATCCTTTTGAGACATCACAAATCTATTTTTTTTTAATTTTAAG  450

seq1  TTGCTAGTAATATTCTCTGTTACCACAAAATATTTTAATAACTAAATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGTAATATTCTCTGTTACCACAAAATATTTTAATAACTAAATAGT  500

seq1  TTTTAAATTAAATTCGAGGAAACCACATAGGAAGTTTATGTGGTGGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTAAATTCGAGGAAACCACATAGGAAGTTTATGTGGTGGGAAA  550

seq1  ATTGACTAGACCCTATTCAGAAATTTTTTTTTTAGAACTCTTGCTGATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTAGACCCTATTCAGAAATTTTTTTTTTAGAACTCTTGCTGATTG  600

seq1  TAGCAAATCCTAAAGCACAAGCCTGAGCCATCAATCAGACATACGGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATCCTAAAGCACAAGCCTGAGCCATCAATCAGACATACGGAATT  650

seq1  AAGTTTGCATTTTTAGCATTTCACCCTGCCACTCAGCATGAAGTTTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCATTTTTAGCATTTCACCCTGCCACTCAGCATGAAGTTTGTGT  700

seq1  GTTCCGATTTCAAGAAATGCATGTAAATGAAACTATAAAATGATTAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCGATTTCAAGAAATGCATGTAAATGAAACTATAAAATGATTAGCTC  750

seq1  AATAATTTAGTAATTCTTTGATTGTAAAATAAAAATCTTCATTTGATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTAGTAATTCTTTGATTGTAAAATAAAAATCTTCATTTGATATA  800

seq1  ATTTCGTAGTACATTCCTGTAGAGAACAGGGACCTTAAAATGCAATTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGTAGTACATTCCTGTAGAGAACAGGGACCTTAAAATGCAATTCAA  850

seq1  TTGAAAAAGAAAAAAACAAGTCAACCATCTATTTTGAATACCTTTTGGGG  900
      |||||||   |||||||||||||||||||||||||| ||||||||| |||
seq2  TTGAAAA--GAAAAAACAAGTCAACCATCTATTTTG-ATACCTTTT-GGG  896

seq1  AGAGCATCTCTAAGGGTGAGCCACATCCTGTTTCATTGACATTTCCACCA  950
      ||||||||||||| |||||| |||||||||||||| |||||||| |||||
seq2  AGAGCATCTCTAA-GGTGAG-CACATCCTGTTTCA-TGACATTT-CACCA  942

seq1  GACTGGACCAAGGAACATTTTTGCTCAAGGCTAATTGCAACGGTCTAGAT  1000
      ||||||||    ||||| |||||||||  ||||||||| |||||||||||
seq2  GACTGGAC---AGAACA-TTTTGCTCA--GCTAATTGC-ACGGTCTAGAT  985

seq1  CTATAAGGAAGGCTTTCCCGGATGACCTATATGTATTACAGTAAGTAAAG  1050
      |||||  ||| |||||||  ||||||   |||||| |||||| ||| |||
seq2  CTATA--GAAAGCTTTCC--GATGAC--TTATGTA-TACAGT-AGT-AAG  1026

seq1  CTCCCCTCTGAGAAGCAGCTATTCAATAAACTTTTTTCCTTTAGA-AGAT  1099
      || || ||||||||||||||||   ||||    |||| ||   || ||||
seq2  CT-CCTTCTGAGAAGCAGCTAT--CATAA---CTTTTGCT---GAGAGAT  1067

seq1  GGGT  1103
      ||||
seq2  GGGT  1071

seq1: chr14_124487116_124487727
seq2: B6Ng01-140M07.g_71_682 (reverse)

seq1  AGCCCATGGGGATTCTAATATATTTTGAATATATCAACATACTAGGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATGGGGATTCTAATATATTTTGAATATATCAACATACTAGGAGAA  50

seq1  CATGCCACCAAATCAACTAAGCAAGACTCACATGGGCTCACAGAGACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACCAAATCAACTAAGCAAGACTCACATGGGCTCACAGAGACTGA  100

seq1  AACAGCAAGGACAGAGCCTACTTGCATCTCCACCAGGTCCTTTGAATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAAGGACAGAGCCTACTTGCATCTCCACCAGGTCCTTTGAATGTA  150

seq1  TGTTATAGCTGTCACCTTAGTGTTCTTGGAGGGACTACTAACAGTGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAGCTGTCACCTTAGTGTTCTTGGAGGGACTACTAACAGTGGAAA  200

seq1  CAGGTGCTTCACTCTTTTGTATGTATGTCCTTGAGAATATTTTCCTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCTTCACTCTTTTGTATGTATGTCCTTGAGAATATTTTCCTCAAA  250

seq1  TTAGGTTGCCTTGTCTAGCTTTGATTCAAGGTTTTTTGCCCTGACTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTGCCTTGTCTAGCTTTGATTCAAGGTTTTTTGCCCTGACTTATT  300

seq1  ATATCTTGTTTTCTCCTGTATAGCAGAGGAAACCAGGTAGGAGTGGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGTTTTCTCCTGTATAGCAGAGGAAACCAGGTAGGAGTGGATTT  350

seq1  GGGGGTAGAGCTAGGAGGAGTGGAGGGAAGGGAAACTGTGGTTGAGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTAGAGCTAGGAGGAGTGGAGGGAAGGGAAACTGTGGTTGAGATGT  400

seq1  ATTGTATGAGAGAAGAATCTAATTTCATTTTTTTTTTAAAAATCAGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGAGAGAAGAATCTAATTTCATTTTTTTTTTAAAAATCAGAATA  450

seq1  GAGATTTCACTGTCATTTCCAAATTATTACAAAATTGACTATTTTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTCACTGTCATTTCCAAATTATTACAAAATTGACTATTTTATTTT  500

seq1  CTCATTATAAAGATAACTCATTCAAATCCAAAGCTTTCTCATATACATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATAAAGATAACTCATTCAAATCCAAAGCTTTCTCATATACATAT  550

seq1  GTTGCATATGTACACATACATTACATAGATATTTTATATATCTTATATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATATGTACACATACATTACATAGATATTTTATATATCTTATATAA  600

seq1  TACATGGAATTC  612
      ||||||||||||
seq2  TACATGGAATTC  612