BAC Information

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BAC

Clone NameB6Ng01-141L20
Chromosome14 (Build37)
Map Location 55,786,410 - 55,898,564
singlet/doubletdoublet
Overlap geneLOC667938, Dhrs2, LOC100042720
Upstream geneDad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4
Downstream geneLOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141L20.bB6Ng01-141L20.g
ACCDH940122DH940123
length803976
definitionDH940122|Mus musculus domesticus DNA, BAC clone: B6Ng01-141L20, 5' end.DH940123|Mus musculus domesticus DNA, BAC clone: B6Ng01-141L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,786,410 - 55,787,212)(55,897,591 - 55,898,564)
sequence
gaattcaagtaggccaggaacctggaggcaggagctgatgcaggagctat
agaagggtgctgcttactggcttgctcctcatggcttgctcagcctgttt
tattatagatcccaggatcaccagcccggggatggtaccacccacaatgg
gctgggtcctctgcatcaatcactaattaaaaaaatgtcctataggcttg
agtacagcctcatcttctggagccatttttctttctttctttaattgata
acttaatatttgctaagcaagtttattagtacatcctttatagcatcaat
tttatttttacaagttcctcttgcatcaaaaggacatctgatcttgaagg
gtgactctatgatatctgtaagttaataaagatcataggtacatgacact
ctgcatttatgatcaagcaaaatcaggctggccaaggaaggtgcctgaat
ttcccctgtctccgtttgggagccgaattgcacaaaagcatatacccaca
ctcaatttatgtgtatccgcagatgggaacagacagcttgaaaaacttaa
taagtatttttacctttacatgtcccctttggcctcccttttaaatgtgt
aagtacttacaacctaggggacgctcaacagcaagcgataaggcagacat
ttaaatggatcagaaagtgggaagtgggagtctgaggggacccattccta
ttacctgcttttctgaatctcaccagcagcagatttcctggaaccctggg
cttgttttatgagcttggctggggggtggggggcgaggggcaaggggtgt
ggg
gaattctttcccaagtctgcctatgccctatttgaagtgaacaagcattt
ctttgtgtctcctcaggaagtcacacaatatgttttcggttccttcattt
tgatagggtatttatgaatagaccatttatttatacattctgctgctaat
ggacgttgggcagtttccgtatgagtcagttccatgcagagcaatacagg
tgcatataattctgttgcctaggaaccagatgagaaattgctgttctcct
ctaaggtgtggtcaagccagtgcacaaaaccatcacagtggtgtcaggtt
acgctccagtggaggctcccattactctgagtcttcaccaacacacactc
tcagctgtaccttacctgggttttgtttgttttcttttgtttgtttgttt
gtttgtttgttttctttgaaatttcccagattgactgagcacatttttat
acatgtatgggtgtttggaaacttgtaaagtgtctgtcagcttgtcgttt
cctttggttgttttttctttttttttttttttttttttttccatttttta
ttaggtatttcactcatttacatttgcaatgctataccaaaagtccccaa
tgaaggagctagagaaagtaccaaagaagctaaagggatctgcaacccta
taggtggaacaacattatgaactaaccagtaccccggagctcttgactct
agctgcatatgcatcaaaagatggcctagtcggccatcactggttgtttt
ttcattgtttctcccacttcaggcttttcctatgtcctcaggcaggtagg
cccgtgtccccaaagactccgttgctggaaggtggttcccaaggcacgaa
gtgtcgacaggtgaagtttggggaaaatgactaggtcacaaaggctatgg
gcttcatgattaattcattgatgagagtaaattctaaatcaattattgtt
gggtggtgaaacttgtgaaagcatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55786410_55787212
seq2: B6Ng01-141L20.b_47_849

seq1  GAATTCAAGTAGGCCAGGAACCTGGAGGCAGGAGCTGATGCAGGAGCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTAGGCCAGGAACCTGGAGGCAGGAGCTGATGCAGGAGCTAT  50

seq1  AGAAGGGTGCTGCTTACTGGCTTGCTCCTCATGGCTTGCTCAGCCTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGTGCTGCTTACTGGCTTGCTCCTCATGGCTTGCTCAGCCTGTTT  100

seq1  TATTATAGATCCCAGGATCACCAGCCCGGGGATGGTACCACCCACAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAGATCCCAGGATCACCAGCCCGGGGATGGTACCACCCACAATGG  150

seq1  GCTGGGTCCTCTGCATCAATCACTAATTAAAAAAATGTCCTATAGGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTCCTCTGCATCAATCACTAATTAAAAAAATGTCCTATAGGCTTG  200

seq1  AGTACAGCCTCATCTTCTGGAGCCATTTTTCTTTCTTTCTTTAATTGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGCCTCATCTTCTGGAGCCATTTTTCTTTCTTTCTTTAATTGATA  250

seq1  ACTTAATATTTGCTAAGCAAGTTTATTAGTACATCCTTTATAGCATCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATATTTGCTAAGCAAGTTTATTAGTACATCCTTTATAGCATCAAT  300

seq1  TTTATTTTTACAAGTTCCTCTTGCATCAAAAGGACATCTGATCTTGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTACAAGTTCCTCTTGCATCAAAAGGACATCTGATCTTGAAGG  350

seq1  GTGACTCTATGATATCTGTAAGTTAATAAAGATCATAGGTACATGACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCTATGATATCTGTAAGTTAATAAAGATCATAGGTACATGACACT  400

seq1  CTGCATTTATGATCAAGCAAAATCAGGCTGGCCAAGGAAGGTGCCTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTATGATCAAGCAAAATCAGGCTGGCCAAGGAAGGTGCCTGAAT  450

seq1  TTCCCCTGTCTCCGTTTGGGAGCCGAATTGCACAAAAGCATATACCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGTCTCCGTTTGGGAGCCGAATTGCACAAAAGCATATACCCACA  500

seq1  CTCAATTTATGTGTATCCGCAGATGGGAACAGACAGCTTGAAAAACTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTTATGTGTATCCGCAGATGGGAACAGACAGCTTGAAAAACTTAA  550

seq1  TAAGTATTTTTACCTTTACATGTCCCCTTTGGCCTCCCTTTTAAATGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTTTTACCTTTACATGTCCCCTTTGGCCTCCCTTTTAAATGTGT  600

seq1  AAGTACTTACAACCTAGGGGACGCTCAACAGCAAGCGATAAGGCAGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTTACAACCTAGGGGACGCTCAACAGCAAGCGATAAGGCAGACAT  650

seq1  TTAAATGGATCAGAAAGTGGGAAGTGGGAGTCTGAGGGGACCCATTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGGATCAGAAAGTGGGAAGTGGGAGTCTGAGGGGACCCATTCCTA  700

seq1  TTACCTGCTTTTCTGAATCTCACCAGCAGCAGATTTCCTGGAACCCTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGCTTTTCTGAATCTCACCAGCAGCAGATTTCCTGGAACCCTGGG  750

seq1  CTTGTTTTAGGAGCTTGGCTGGGGGGTGGGGGGCGAGGGGCAAGGGGTGT  800
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTATGAGCTTGGCTGGGGGGTGGGGGGCGAGGGGCAAGGGGTGT  800

seq1  GGG  803
      |||
seq2  GGG  803

seq1: chr14_55897591_55898564
seq2: B6Ng01-141L20.g_69_1044 (reverse)

seq1  CTATGCTTTCCACAGTTTCACCACCCAACAATAATGGATTTAG-ATTTAC  49
      ||||||||||   |||||||||||||||||||||| ||||||| ||||||
seq2  CTATGCTTTCACAAGTTTCACCACCCAACAATAATTGATTTAGAATTTAC  50

seq1  TCTCATCAATGGATTAATCATGAAG-CCATAGCCTTTGTGACCTAGTCAT  98
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  TCTCATCAATGAATTAATCATGAAGCCCATAGCCTTTGTGACCTAGTCAT  100

seq1  TTTCCCCAAACTTCACCTGTCGACACTTCGTGCCTTGGGAACCACCTTCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCAAACTTCACCTGTCGACACTTCGTGCCTTGGGAACCACCTTCC  150

seq1  AGCAACGGAGTCTTTGGGGACACGGGCCTACCTGCCTGAGGACATAGGAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACGGAGTCTTTGGGGACACGGGCCTACCTGCCTGAGGACATAGGAA  200

seq1  AAGCCTGAAGTGGGAGAAACAATGAAAAAACAACCAGTGATGGCCGACTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGAAGTGGGAGAAACAATGAAAAAACAACCAGTGATGGCCGACTA  250

seq1  GGCCATCTTTTGATGCATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCTTTTGATGCATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTG  300

seq1  GTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTT  350

seq1  CTTTGGTACTTTCTCTAGCTCCTTCATTGGGGACTTTTGGTATAGCATTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTACTTTCTCTAGCTCCTTCATTGGGGACTTTTGGTATAGCATTG  400

seq1  CAAATGTAAATGAGTGAAATACCTAATAAAAAATGGAAAAAAAAAAAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTAAATGAGTGAAATACCTAATAAAAAATGGAAAAAAAAAAAAAA  450

seq1  AAAAAAAAAGAAAAAACAACCAAAGGAAACGACAAGCTGACAGACACTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGAAAAAACAACCAAAGGAAACGACAAGCTGACAGACACTTT  500

seq1  ACAAGTTTCCAAACACCCATACATGTATAAAAATGTGCTCAGTCAATCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTCCAAACACCCATACATGTATAAAAATGTGCTCAGTCAATCTG  550

seq1  GGAAATTTCAAAGAAAACAAACAAACAAACAAACAAACAAAAGAAAACAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTCAAAGAAAACAAACAAACAAACAAACAAACAAAAGAAAACAA  600

seq1  ACAAAACCCAGGTAAGGTACAGCTGAGAGTGTGTGTTGGTGAAGACTCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCCAGGTAAGGTACAGCTGAGAGTGTGTGTTGGTGAAGACTCAG  650

seq1  AGTAATGGGAGCCTCCACTGGAGCGTAACCTGACACCACTGTGATGGTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGGGAGCCTCCACTGGAGCGTAACCTGACACCACTGTGATGGTTT  700

seq1  TGTGCACTGGCTTGACCACACCTTAGAGGAGAACAGCAATTTCTCATCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACTGGCTTGACCACACCTTAGAGGAGAACAGCAATTTCTCATCTG  750

seq1  GTTCCTAGGCAACAGAATTATATGCACCTGTATTGCTCTGCATGGAACTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTAGGCAACAGAATTATATGCACCTGTATTGCTCTGCATGGAACTG  800

seq1  ACTCATACGGAAACTGCCCAACGTCCATTAGCAGCAGAATGTATAAATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATACGGAAACTGCCCAACGTCCATTAGCAGCAGAATGTATAAATAA  850

seq1  ATGGTCTATTCATAAATACCCTATCAAAATGAAGGAACCGAAAACATATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTATTCATAAATACCCTATCAAAATGAAGGAACCGAAAACATATT  900

seq1  GTGTGACTTCCTGAGGAGACACAAAGAAATGCTTGTTCACTTCAAATAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACTTCCTGAGGAGACACAAAGAAATGCTTGTTCACTTCAAATAGG  950

seq1  GCATAGGCAGACTTGGGAAAGAATTC  974
      ||||||||||||||||||||||||||
seq2  GCATAGGCAGACTTGGGAAAGAATTC  976