BAC Information

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BAC

Clone NameB6Ng01-142A22
Chromosome14 (Build37)
Map Location 48,440,539 - 48,559,299
singlet/doubletdoublet
Overlap gene4930447J18Rik
Upstream geneGmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1
Downstream geneMap1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142A22.bB6Ng01-142A22.g
ACCDH940352DH940353
length1,0601,066
definitionDH940352|Mus musculus domesticus DNA, BAC clone: B6Ng01-142A22, 5' end.DH940353|Mus musculus domesticus DNA, BAC clone: B6Ng01-142A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,558,224 - 48,559,299)(48,440,539 - 48,441,615)
sequence
gaattcattctagaccaggctggccttgaactcacagaggtctgcttgcc
tctgcctcctgagtgctgggataaaaggtgtgcagccccaccagcctctc
tcacacccactcacagaaccaactgcttctggccataatttcctccactg
cctgttgctggcatacaagggactataaccatatcttacaaaactgtgtg
aaccctttttcctacttaggagacatctactcttgatactcctctcccat
ttacacatctcactaccaagtgtgatagtttcaatgagaatggccccaat
agccttatatatttcaatacgttggtggctaattggtggaactatttagg
aaggatgaggaggtgtggccttgttggagaaggtgtgtcctctgggggca
ggcttggaggtctcaaatgctcaggccattcacagttagctctccctgct
ttctgcttatagatcaaaatataagctctcagctactgcttcggtggtgt
ttctgcctgcctgctatggtgttcaccaccatgatagtcatggcctctaa
ccctctggcagcataagccccaaattaaatgttttcttttgtaaattgct
tttgtttgggtgcttttaatcacagcaacagaaaggtaactaagatacag
gtgttctgtcaccaggtaaacaatggtaaaatgcatctccccaattctga
cctcctcccacctctacagaacttccctcctacttctctatccccgacca
cttctgtggcttcttattcttgtagagcccagtctccttacaatctgtag
agaaattttaatccagaaacatggctgctctgacaagcgatcacatccaa
agacctaggtctgtgtgatctggctggaatgcagacatggtcttagaaca
ctccgttaatcccaaacatgaaataggttagtttatagaagaaagcagcc
attcttatatctacagtttagatagctactataacaaaataccctagtct
gctgactaaacagaacaaataccataggtagtagctacactgacagtatt
tcctcatggt
gaattccttgaacagttcagtccagaaaccagcccctcctcctcttgaat
cgaggggaagttctgctgtggtcagaagggctaaaagccctcaggaagct
ctgctctatagcctgtgagaacactgctgcctcaggctgtagtaggaaac
ctcgactttcagcgttttgtcaggttttaatctatcccctttcaactctt
tttggttctgtcaaataggagccatgcccgcaggctcttagaacctttgg
tatttgaaaaggcagctacagagagccatcatttacagccaacactttat
tccaggggcttcattcagagtcaggctcacaggtcccagtgggtcaggct
caggagagatgccccttgatggataggcaagagagcaaaggtgacttcag
gccccagagtctataggggacagccttggaaaggagggcatagaagaact
tagatgaaggaagcaaggacagaaagggaactagctgtccctcatttaat
aggcatatatatatatcatcaacagctgtttattttattttattttattt
tattttattttattttattttattttatattattttattttgagactggg
tttctctgtgcagccctggctgctctcaagctgcagaccaggctggcctt
gaactcagagatctgactgcttctgcctcccaaggggttacaagtatgac
ctactcccccaccctttcctattaaaattttaaaataactttaggtttac
aaaacattacaaaaaaaaaaaaggtatacactctgctctgcctcttcaaa
tgctaactcttcagaaatgagtacaagggaccatgatcaggaaatgggta
ttgttatgaatctattagttactctacagattaattttgtagaattaaat
tcagatttaatttcaaattaaataattcaaatctctcgatatcccatgat
gccctttccagtgccaggtatgtccagatcgacaatatagtcagctgcac
attttcttctttttgacagagtagtttttctgcctgtatgacgagggatg
ctttaatcttatttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_48558224_48559299
seq2: B6Ng01-142A22.b_48_1107 (reverse)

seq1  ACCATGAGAAATAACTGTCAGTGTTAAGCTACCTAACCTATGGTATTTTG  50
      |||||||| ||  |||||||||||  ||||||   |||||||||| ||||
seq2  ACCATGAGGAAATACTGTCAGTGT--AGCTAC--TACCTATGGTA-TTTG  45

seq1  TTCTGTTTAAGTCAGCCAGACTAGGGTATTTTGTTATAGTAGCTTAATCT  100
      |||||||| |||||| ||||||||||||||||||||||||||||  ||||
seq2  TTCTGTTT-AGTCAG-CAGACTAGGGTATTTTGTTATAGTAGCT--ATCT  91

seq1  AAAACTGTTAGAATAATAAGAATGGCTGCTTTCTTCTATAAACTAACCTT  150
       |||||| ||||   |||||||||||||||||||||||||||||||||| 
seq2  -AAACTG-TAGA--TATAAGAATGGCTGCTTTCTTCTATAAACTAACCT-  136

seq1  ATTTTCATTGTTTGGGATTAACGGAGTGTTCTAAGGCCATGTCTGCATTC  200
        ||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  -ATTTCA-TGTTTGGGATTAACGGAGTGTTCTAAGACCATGTCTGCATTC  184

seq1  CAGCCAGATCACACAGACCTAGGTCTTTGGATGTGATCGCTTGTCAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGATCACACAGACCTAGGTCTTTGGATGTGATCGCTTGTCAGAGC  234

seq1  AGCCATGTTTCTGGATTAAAATTTCTCTACAGATTGTAAGGAGACTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGTTTCTGGATTAAAATTTCTCTACAGATTGTAAGGAGACTGGGC  284

seq1  TCTACAAGAATAAGAAGCCACAGAAGTGGTCGGGGATAGAGAAGTAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAGAATAAGAAGCCACAGAAGTGGTCGGGGATAGAGAAGTAGGAG  334

seq1  GGAAGTTCTGTAGAGGTGGGAGGAGGTCAGAATTGGGGAGATGCATTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTCTGTAGAGGTGGGAGGAGGTCAGAATTGGGGAGATGCATTTTA  384

seq1  CCATTGTTTACCTGGTGACAGAACACCTGTATCTTAGTTACCTTTCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTTACCTGGTGACAGAACACCTGTATCTTAGTTACCTTTCTGTT  434

seq1  GCTGTGATTAAAAGCACCCAAACAAAAGCAATTTACAAAAGAAAACATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGATTAAAAGCACCCAAACAAAAGCAATTTACAAAAGAAAACATTT  484

seq1  AATTTGGGGCTTATGCTGCCAGAGGGTTAGAGGCCATGACTATCATGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGGGCTTATGCTGCCAGAGGGTTAGAGGCCATGACTATCATGGTG  534

seq1  GTGAACACCATAGCAGGCAGGCAGAAACACCACCGAAGCAGTAGCTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACACCATAGCAGGCAGGCAGAAACACCACCGAAGCAGTAGCTGAGA  584

seq1  GCTTATATTTTGATCTATAAGCAGAAAGCAGGGAGAGCTAACTGTGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATATTTTGATCTATAAGCAGAAAGCAGGGAGAGCTAACTGTGAATG  634

seq1  GCCTGAGCATTTGAGACCTCCAAGCCTGCCCCCAGAGGACACACCTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGCATTTGAGACCTCCAAGCCTGCCCCCAGAGGACACACCTTCTC  684

seq1  CAACAAGGCCACACCTCCTCATCCTTCCTAAATAGTTCCACCAATTAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGCCACACCTCCTCATCCTTCCTAAATAGTTCCACCAATTAGCC  734

seq1  ACCAACGTATTGAAATATATAAGGCTATTGGGGCCATTCTCATTGAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACGTATTGAAATATATAAGGCTATTGGGGCCATTCTCATTGAAACT  784

seq1  ATCACACTTGGTAGTGAGATGTGTAAATGGGAGAGGAGTATCAAGAGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACTTGGTAGTGAGATGTGTAAATGGGAGAGGAGTATCAAGAGTAG  834

seq1  ATGTCTCCTAAGTAGGAAAAAGGGTTCACACAGTTTTGTAAGATATGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCCTAAGTAGGAAAAAGGGTTCACACAGTTTTGTAAGATATGGTT  884

seq1  ATAGTCCCTTGTATGCCAGCAACAGGCAGTGGAGGAAATTATGGCCAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCCTTGTATGCCAGCAACAGGCAGTGGAGGAAATTATGGCCAGAA  934

seq1  GCAGTTGGTTCTGTGAGTGGGTGTGAGAGAGGCTGGTGGGGCTGCACACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGGTTCTGTGAGTGGGTGTGAGAGAGGCTGGTGGGGCTGCACACC  984

seq1  TTTTATCCCAGCACTCAGGAGGCAGAGGCAAGCAGACCTCTGTGAGTTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCCAGCACTCAGGAGGCAGAGGCAAGCAGACCTCTGTGAGTTCA  1034

seq1  AGGCCAGCCTGGTCTAGAATGAATTC  1076
      ||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGTCTAGAATGAATTC  1060

seq1: chr14_48440539_48441615
seq2: B6Ng01-142A22.g_66_1131

seq1  GAATTCCTTGAACAGTTCAGTCCAGAAACCAGCCCCTCCTCCTCTTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGAACAGTTCAGTCCAGAAACCAGCCCCTCCTCCTCTTGAAT  50

seq1  CGAGGGGAAGTTCTGCTGTGGTCAGAAGGGCTAAAAGCCCTCAGGAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGGAAGTTCTGCTGTGGTCAGAAGGGCTAAAAGCCCTCAGGAAGCT  100

seq1  CTGCTCTATAGCCTGTGAGAACACTGCTGCCTCAGGCTGTAGTAGGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTATAGCCTGTGAGAACACTGCTGCCTCAGGCTGTAGTAGGAAAC  150

seq1  CTCGACTTTCAGCGTTTTGTCAGGTTTTAATCTATCCCCTTTCAACTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACTTTCAGCGTTTTGTCAGGTTTTAATCTATCCCCTTTCAACTCTT  200

seq1  TTTGGTTCTGTCAAATAGGAGCCATGCCCGCAGGCTCTTAGAACCTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTCTGTCAAATAGGAGCCATGCCCGCAGGCTCTTAGAACCTTTGG  250

seq1  TATTTGAAAAGGCAGCTACAGAGAGCCATCATTTACAGCCAACACTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAAAAGGCAGCTACAGAGAGCCATCATTTACAGCCAACACTTTAT  300

seq1  TCCAGGGGCTTCATTCAGAGTCAGGCTCACAGGTCCCAGTGGGTCAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGGCTTCATTCAGAGTCAGGCTCACAGGTCCCAGTGGGTCAGGCT  350

seq1  CAGGAGAGATGCCCCTTGATGGATAGGCAAGAGAGCAAAGGTGACTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGATGCCCCTTGATGGATAGGCAAGAGAGCAAAGGTGACTTCAG  400

seq1  GCCCCAGAGTCTATAGGGGACAGCCTTGGAAAGGAGGGCATAGAAGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGAGTCTATAGGGGACAGCCTTGGAAAGGAGGGCATAGAAGAACT  450

seq1  TAGATGAAGGAAGCAAGGACAGAAAGGGAACTAGCTGTCCCTCATTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAAGGAAGCAAGGACAGAAAGGGAACTAGCTGTCCCTCATTTAAT  500

seq1  AGGCATATATATATATCATCAACAGCTG-----TTTATTTTATTTTATTT  545
      ||||||||||||||||||||||||||||     |||||||||||||||||
seq2  AGGCATATATATATATCATCAACAGCTGTTTATTTTATTTTATTTTATTT  550

seq1  TATTTTATTTTATTTTATTTTATTTTATATTATTTTATTTTGAGACTGGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTTATTTTATTTTATTTTATATTATTTTATTTTGAGACTGGG  600

seq1  TTTCTCTGTGCAGCCCTGGCTGCTCTCAAGCTGCAGACCAGGCTGGCCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTGCAGCCCTGGCTGCTCTCAAGCTGCAGACCAGGCTGGCCTT  650

seq1  GAACTCAGAGATCTGACTGCTTCTGCCTCCCAAGGGGTTACAAGTATGAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAGATCTGACTGCTTCTGCCTCCCAAGGGGTTACAAGTATGAC  700

seq1  CTACTCCCCCACCCTTTCCTATTAAAATTTTAAAATAACTTTAGGTTTAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCCCCACCCTTTCCTATTAAAATTTTAAAATAACTTTAGGTTTAC  750

seq1  AAAACATTAC-AAAAAAAAAAAGGTATACACTCTGCTCTGCCTCTTCAAA  794
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTACAAAAAAAAAAAAGGTATACACTCTGCTCTGCCTCTTCAAA  800

seq1  TGCTAACTCTTCAGAAATGAGTACAAGGGACCATGATCAGGAAATGGGTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACTCTTCAGAAATGAGTACAAGGGACCATGATCAGGAAATGGGTA  850

seq1  TTGTTATGAATCTATTAGTTACTCTACAGATTAATTTTGTAGAATTAAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATGAATCTATTAGTTACTCTACAGATTAATTTTGTAGAATTAAAT  900

seq1  TCAGATTTAATTTCAAATTAAATAATTCAAATCTCTCCAATTATCCCATG  944
      ||||||||||||||||||||||||||||||||||||| |  |||||||||
seq2  TCAGATTTAATTTCAAATTAAATAATTCAAATCTCTCGA--TATCCCATG  948

seq1  AATGGCCCTTTCCAGTGCCAGGGTATGTCCAGGATCCGACAATATAGTCA  994
      |   |||||||||||||||| |||||||||| ||| ||||||||||||||
seq2  A--TGCCCTTTCCAGTGCCA-GGTATGTCCA-GAT-CGACAATATAGTCA  993

seq1  GCTGCCACATTTTCTTCTCTTTTGACCAGAGTTAGTTTTTCTGCCCTGTA  1044
      |||| ||||||||||||| |||||| ||||| ||||||||||| ||||||
seq2  GCTG-CACATTTTCTTCT-TTTTGA-CAGAG-TAGTTTTTCTG-CCTGTA  1038

seq1  ATTGACGAGGGATGCTTTTAAATCTTTATTTAC  1077
        ||||||||||||||||  |||| ||||||||
seq2  --TGACGAGGGATGCTTT--AATC-TTATTTAC  1066