BAC Information

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BAC

Clone NameB6Ng01-143E13
Chromosome14 (Build37)
Map Location 100,578,378 - 100,736,901
singlet/doubletdoublet
Overlap genenone
Upstream geneD14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
Downstream geneLOC100043413, EG668683, EG668684, 1700110M21Rik, LOC100043421
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143E13.bB6Ng01-143E13.g
ACCDH941261DH941262
length1,1481,084
definitionDH941261|Mus musculus domesticus DNA, BAC clone: B6Ng01-143E13, 5' end.DH941262|Mus musculus domesticus DNA, BAC clone: B6Ng01-143E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,578,378 - 100,579,513)(100,735,809 - 100,736,901)
sequence
gaattccctaccacatgtctgccttcctccttaacctactcttgcctgtc
ttctcttgagctctcacagggccctcggatcaactatatacacatctcct
tttccatctcctaatgttgtgtctcaaagatatgcccctagctgcatgct
tgtttactaaacagccccacagtttgtctcagagggagaaatcaggtatg
ggttgcatatataattgcctctaacatgtcctacaaatgaggtaaagggg
aggtaagactttgagtgaaagactgtgtaattggttttataaaacctaag
ttagcgctgggagtatggtttagtgggtagaatatgctcacagccccaga
gcccattataaagcgaggcatgttgctttccagtaagctcttccaattct
tgcagcagtgagttggagaccactgggttgaagaagttccctgtctttca
gcctagaccacacccagcatgctaaacactcagtgagagaccctttctca
aagtattaagaggagagcaataaagaaagacactagacacactgacattt
ggcctctctgtctaccagaatgcacacacacacacacacacactcataag
catgagtacatgcacacatactcataaatgtgcacttgcacacagcacat
gagcaaacagaccaaaaaaaacccttaagaaaacagatttcattaaagct
attttttaagtgctaataaaaaattcaacagtgggttctgatattgcctt
ggagaattgggtttcaaatagtgtgagatttgaaataaatatcatgttaa
gggaaaggatgcttgtacgtaaaatggggaaatattatttttaaaggttt
ttgactctttaatttttactttcaaagacttcagcattgcagattgcact
ttcaatagtgagcatagaagagggaactgagtcacgcccattgggagagc
tttgttttagcattatgcagaaccctgcacttgagtctcacacccagaaa
aataaaaagtcagtttggcttgcatttaataagcttttctcttaagcatt
cctaatacgtacctatttcaattctattatagctccagactattctagat
tgggcatctatgtgccttcagcctatacctgctatccacgtgtctgaa
gaattctccctaacaaactcacctttaactgatagactgaggcacagcaa
gaaatggggaaattgtgtctccaagaactaagagaactctgccaacaagg
cctctatctctggagcaccacagaaaacaaacaaaaacaagcaaaatctt
ccatgtttccaaaatagaaaatatccaaattattaagctttaccttcatt
tctctattccattgtgttatggcatacactgctaaaggatgccatttcag
tttcttttacttgttaagagaaatttacatttctttttctgggttccgtg
gatctaatggagggaaaaaacaaaaaatcaaaaatcttgtcagacatatt
ggcgtcagaggatgttatcaagaagcctgggcccctcttttataaacact
tcacaaggagcagaatcagacattgtagcttctttgtccttcagtcttcc
attccatcactcatgcaggatatttccaacaaggtcattgtccagtgacc
atgaagcaaggccaaacattaatcaaaatgacgaagctgagggcaggagg
acctgagtcctcagctctactatagaatcctgtagctacttaggcatcac
ctgacagcagatatttttcatgagaatgtatttttttctggcttcgtgtt
tgagcgggtcattctgcaatggctggaagaacaggacaacttgtgtgaaa
gagaaggcgggagcaatagtgtcttactcactgctctgttgctgtgaaga
ggccctgtgaccaaaacaacttatgaaagaaagcatttcactggtgcttg
ctgacagtttcagatggcttgtctaggactataatggcaatgagtatgtg
gcagcaggctttgagcatagcactagagcagtatgtggtgactaattacc
ctgaggcagaaaagagaagcacagagagctatgaaaatagcattggattt
ttgaacctgcaaggtatgctagtgaaccatctcctccaacaagtcaccaa
ctcctatccttccaacaagttccaccaccttagaaccagcattcaattaa
tgaagttaatggaggccctctcccatttaaccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_100578378_100579513
seq2: B6Ng01-143E13.b_50_1197

seq1  GAATTCCCTACCACATGTCTGCCTTCCTCCTTAACCTACTCTTGCCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTACCACATGTCTGCCTTCCTCCTTAACCTACTCTTGCCTGTC  50

seq1  TTCTCTTGAGCTCTCACAGGGCCCTCGGATCAACTATATACACATCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGAGCTCTCACAGGGCCCTCGGATCAACTATATACACATCTCCT  100

seq1  TTTCCATCTCCTAATGTTGTGTCTCAAAGATATGCCCCTAGCTGCATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCTCCTAATGTTGTGTCTCAAAGATATGCCCCTAGCTGCATGCT  150

seq1  TGTTTACTAAACAGCCCCACAGTTTGTCTCAGAGGGAGAAATCAGGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTAAACAGCCCCACAGTTTGTCTCAGAGGGAGAAATCAGGTATG  200

seq1  GGTTGCATATATAATTGCCTCTAACATGTCCTACAAATGAGGTAAAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCATATATAATTGCCTCTAACATGTCCTACAAATGAGGTAAAGGGG  250

seq1  AGGTAAGACTTTGAGTGAAAGACTGTGTAATTGGTTTTATAAAACCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGACTTTGAGTGAAAGACTGTGTAATTGGTTTTATAAAACCTAAG  300

seq1  TTAGCGCTGGGAGTATGGTTTAGTGGGTAGAATATGCTCACAGCCCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCGCTGGGAGTATGGTTTAGTGGGTAGAATATGCTCACAGCCCCAGA  350

seq1  GCCCATTATAAAGCGAGGCATGTTGCTTTCCAGTAAGCTCTTCCAATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTATAAAGCGAGGCATGTTGCTTTCCAGTAAGCTCTTCCAATTCT  400

seq1  TGCAGCAGTGAGTTGGAGACCACTGGGTTGAAGAAGTTCCCTGTCTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAGTGAGTTGGAGACCACTGGGTTGAAGAAGTTCCCTGTCTTTCA  450

seq1  GCCTAGACCACACCCAGCATGCTAAACACTCAGTGAGAGACCCTTTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGACCACACCCAGCATGCTAAACACTCAGTGAGAGACCCTTTCTCA  500

seq1  AAGTATTAAGAGGAGAGCAATAAAGAAAGACACTAGACACACTGACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTAAGAGGAGAGCAATAAAGAAAGACACTAGACACACTGACATTT  550

seq1  GGCCTCTCTGTCTACCAGAATGCACACACACACACACACACACTCATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCTGTCTACCAGAATGCACACACACACACACACACACTCATAAG  600

seq1  CATGAGTACATGCACACATACTCATAAATGTGCACTTGCACACAGCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTACATGCACACATACTCATAAATGTGCACTTGCACACAGCACAT  650

seq1  GAGCAAACAGACCAAAAAAAACCCTTAAG-AAACAGATTTCATTAAAGCT  699
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGCAAACAGACCAAAAAAAACCCTTAAGAAAACAGATTTCATTAAAGCT  700

seq1  A-TTTTTAAGTGCTAATAAAAAATTCAACAGTGGGTTCTGATATTGCCTT  748
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAGTGCTAATAAAAAATTCAACAGTGGGTTCTGATATTGCCTT  750

seq1  GGAGAATTGGGTTTCAAATAGTGTGAGA-TTGAAATAAATATCATGTTAA  797
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGAGAATTGGGTTTCAAATAGTGTGAGATTTGAAATAAATATCATGTTAA  800

seq1  GGG-AAGGATGCTTGTACGTAAAATGGGGAAATA-TATTTTTAAAGGTTT  845
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGAAAGGATGCTTGTACGTAAAATGGGGAAATATTATTTTTAAAGGTTT  850

seq1  TTGACTCTTTAATTTTTAC-TTCAAAGACTTCAGCATTGCAGAATGCACT  894
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  TTGACTCTTTAATTTTTACTTTCAAAGACTTCAGCATTGCAGATTGCACT  900

seq1  TTCAATAGTGAGCATAGAAGAGGGAACTGAGTCACGGCCCATTGGGAGAG  944
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCAATAGTGAGCATAGAAGAGGGAACTGAGTCAC-GCCCATTGGGAGAG  949

seq1  CTT--GTTTAGCA-TATGCAGAACCCTGCAC-TGAGTCCTCAACACCAGA  990
      |||   ||||||| ||||||||||||||||| ||||| ||||   |||||
seq2  CTTTGTTTTAGCATTATGCAGAACCCTGCACTTGAGT-CTCACACCCAGA  998

seq1  AAA--TAAAAGTCAG-TTGGC-TGCA-TTAATAAGCTTTTCTCTAAGGCA  1035
      |||   ||||||||| ||||| |||| ||||||||||||||||| | |||
seq2  AAAATAAAAAGTCAGTTTGGCTTGCATTTAATAAGCTTTTCTCTTAAGCA  1048

seq1  ATTCTAATACGTAGCTATTTCAATTCTATTAATAGCTCAAGACTATTCTA  1085
       | |||||||||| |||||||||||||||| ||||||| |||||||||| 
seq2  TTCCTAATACGTACCTATTTCAATTCTATT-ATAGCTCCAGACTATTCT-  1096

seq1  AGATAGGGCATCTATGTG-CTTCAGTCCTATA-CTGCTATACTACTGTCT  1133
      |||| ||||||||||||| |||||| |||||| ||||||| |   |||||
seq2  AGATTGGGCATCTATGTGCCTTCAG-CCTATACCTGCTATCCACGTGTCT  1145

seq1  GAA  1136
      |||
seq2  GAA  1148

seq1: chr14_100735809_100736901
seq2: B6Ng01-143E13.g_71_1154 (reverse)

seq1  GTGGTTTAAATGAGA-AGGGCCTCCATAAACTCATTTATTTGAATGCTGG  49
      |||| ||||||| || ||||||||||| ||||   ||| ||||||||| |
seq2  GTGG-TTAAATGGGAGAGGGCCTCCATTAACTTCATTAATTGAATGCT-G  48

seq1  GTCCTAAGTTGGTGGAACTGTTTGGGAAGAATTAGGAGTTGTGAACTTGT  99
      || ||||| ||||||||||  |||| | ||  |||||||||   ||||||
seq2  GTTCTAAGGTGGTGGAACTTGTTGGAAGGA--TAGGAGTTGGTGACTTGT  96

seq1  TGGAAGAGATGTGTCACTAGCATTACCTTGCAGGTTTCAAAAATCCAATG  149
      |||| ||||||  ||||||||| ||||||||||| |||||||||||||||
seq2  TGGAGGAGATGGTTCACTAGCA-TACCTTGCAGG-TTCAAAAATCCAATG  144

seq1  CTATTTCCATTAGCTCTCTCTGCTTCTCTCTTTCTGCCTCAGGGTTATTA  199
      |||||| || ||||||||| ||||||||| ||||||||||||||| ||||
seq2  CTATTTTCA-TAGCTCTCTGTGCTTCTCT-TTTCTGCCTCAGGGTAATTA  192

seq1  TGTCACCACATACTGCTCTAGTGCTATGCTCAAATGCCTGCTGCCACATA  249
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  -GTCACCACATACTGCTCTAGTGCTATGCTCAAA-GCCTGCTGCCACATA  240

seq1  CTCATTGCCATTATAGTCCTAGACAAGCCATCTGAAACTGTCAGCAAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGCCATTATAGTCCTAGACAAGCCATCTGAAACTGTCAGCAAGCA  290

seq1  CCAGTGAAATGCTTTCTTTCATAAGTTGTTTTGGTCACAGGGCCTCTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAAATGCTTTCTTTCATAAGTTGTTTTGGTCACAGGGCCTCTTCA  340

seq1  CAGCAACAGAGCAGTGAGTAAGACACTATTGCTCCCGCCTTCTCTTTCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACAGAGCAGTGAGTAAGACACTATTGCTCCCGCCTTCTCTTTCAC  390

seq1  ACAAGTTGTCCTGTTCTTCCAGCCATTGCAGAATGACCCGCTCAAACACG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGTCCTGTTCTTCCAGCCATTGCAGAATGACCCGCTCAAACACG  440

seq1  AAGCCAGAAAAAAATACATTCTCATGAAAAATATCTGCTGTCAGGTGATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAAAAAAATACATTCTCATGAAAAATATCTGCTGTCAGGTGATG  490

seq1  CCTAAGTAGCTACAGGATTCTATAGTAGAGCTGAGGACTCAGGTCCTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTAGCTACAGGATTCTATAGTAGAGCTGAGGACTCAGGTCCTCCT  540

seq1  GCCCTCAGCTTCGTCATTTTGATTAATGTTTGGCCTTGCTTCATGGTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCAGCTTCGTCATTTTGATTAATGTTTGGCCTTGCTTCATGGTCAC  590

seq1  TGGACAATGACCTTGTTGGAAATATCCTGCATGAGTGATGGAATGGAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAATGACCTTGTTGGAAATATCCTGCATGAGTGATGGAATGGAAGA  640

seq1  CTGAAGGACAAAGAAGCTACAATGTCTGATTCTGCTCCTTGTGAAGTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGACAAAGAAGCTACAATGTCTGATTCTGCTCCTTGTGAAGTGTT  690

seq1  TATAAAAGAGGGGCCCAGGCTTCTTGATAACATCCTCTGACGCCAATATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGAGGGGCCCAGGCTTCTTGATAACATCCTCTGACGCCAATATG  740

seq1  TCTGACAAGATTTTTGATTTTTTGTTTTTTCCCTCCATTAGATCCACGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAGATTTTTGATTTTTTGTTTTTTCCCTCCATTAGATCCACGGA  790

seq1  ACCCAGAAAAAGAAATGTAAATTTCTCTTAACAAGTAAAAGAAACTGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAAAAGAAATGTAAATTTCTCTTAACAAGTAAAAGAAACTGAAA  840

seq1  TGGCATCCTTTAGCAGTGTATGCCATAACACAATGGAATAGAGAAATGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCCTTTAGCAGTGTATGCCATAACACAATGGAATAGAGAAATGAA  890

seq1  GGTAAAGCTTAATAATTTGGATATTTTCTATTTTGGAAACATGGAAGATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGCTTAATAATTTGGATATTTTCTATTTTGGAAACATGGAAGATT  940

seq1  TTGCTTGTTTTTGTTTGTTTTCTGTGGTGCTCCAGAGATAGAGGCCTTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGTTTTTGTTTGTTTTCTGTGGTGCTCCAGAGATAGAGGCCTTGT  990

seq1  TGGCAGAGTTCTCTTAGTTCTTGGAGACACAATTTCCCCATTTCTTGCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGTTCTCTTAGTTCTTGGAGACACAATTTCCCCATTTCTTGCTG  1040

seq1  TGCCTCAGTCTATCAGTTAAAGGTGAGTTTGTTAGGGAGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGTCTATCAGTTAAAGGTGAGTTTGTTAGGGAGAATTC  1084