BAC Information

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BAC

Clone NameB6Ng01-148O19
Chromosome14 (Build37)
Map Location 96,521,178 - 96,664,255
singlet/doubletdoublet
Overlap geneKlhl1
Upstream geneLOC677613, LOC100043784, LOC382931, 4921530L21Rik
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148O19.bB6Ng01-148O19.g
ACCDH945403DH945404
length1,1271,114
definitionDH945403|Mus musculus domesticus DNA, BAC clone: B6Ng01-148O19, 5' end.DH945404|Mus musculus domesticus DNA, BAC clone: B6Ng01-148O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,663,112 - 96,664,255)(96,521,178 - 96,522,294)
sequence
gaattcaataaaccggccagtacagacctgcaaatgaagtaataaataat
caagagtatgttagtctcaagccagtcatctgtgagaaatttctgagcca
ttaaacaatttcccaatttactacaattcagcataagtaccattatcttt
tccaaatatgttggagaatcagagagaaatgtatgaaacaggaatttagg
ggatgacaaatacttaataaaaataagcactggaaatcaggcttcaatgg
cagttacttataacattttacactataaaataaaagatgcaatttaatcc
tgaccataatattttatctcatattaatatgcactcttactgtttattat
tttaatgtgtgctaatttataggtgaaacttgacagagaaattggctata
tgtaggatcaattttaaacaatttgtaatgttttctggagagcaaactta
tttttcatgatcttgtgttcaaagcaaaagtctagtaatatattatcaca
ttaaagaattaatttctcagcatctgttttttattctgtgtgtgctgagt
gttgtctcttatttaataagtgccccattataagtgctttaccctgtgtt
ttcatcatgataacatttccctttcatcctcccagatccattcctcctgt
cttatttagaattttagtactgtaaagagacatcatgatgaaggcaactc
ttataaaagacagcatatatttgggatcaccttacagcttcagagaatta
gtccactgccatcaggatggcagcatgacagcataggaagacttggggcc
agagtagctgtgaggtctccatcttgattcaaagctagcacaacggtact
ggattttacagtggacagagcttcagcatagagacctaaaggcagcccac
actgtcacatggcctcgaacaggcacacctatcctaataaggcacacctc
ctaacagtgccacttgccatgggtcaaacattcaacaccataaatcttat
agaggccatacatattcacaacaccatatttctactgtctctcagatgca
tctaaatatgtaaaatatttaggaaacttcaaattccataggtctaatct
agtctcaacatttttttaaagtcaaag
gaattctagagggatgtttttgtggacagacatattcacaatgcaaatat
tttggcctgacaattgcacttagatattaatccataggagtgaggctctt
gagacagagtcagtattaaagattaatcatctacaatgactatatgtaca
tacatgcaactattattagtataaacttattaatattccccagacacagt
tttcttaattttatgacccaaatcagaaccttaagcttattaaggcatat
aaattgtgcctactgtatattcaacaaaataaaagttttgagttttactg
tgctcatcaatggaaacattgtttattaaaagaatatcttaccattagct
ttctagctaaggtgaaaggtaaaataataaaagcaaagtacacaacaatt
gaatcaaaaggaacatgtctaagaatgtttgtactccctctgttgtaaac
aagatcatggcaattaccaaggtgttttctactttcaatcgctttcccta
taatttatcttgctttctacacaactcacacattttggagcttttcatgt
agaatgggatctattgccttctattctgatcctaattacttaaaagaaaa
ttttcactcaagatgagccaatcatgtatcttcatcatgcagggcaatgg
agctttctttctgatgaacaacatcttatttggatcctatttcctttata
tttgaaatcaactgaggacatagattattcatttcctactttaagtgaaa
gattactactttagtgcttcttatagctttacgttgtgaactgtctcacc
ttagggcagtaacacagagacagaaatgactggcagtaagaacacattct
gaagccttcatgtttttgctaccagaaattttaaatcaaatatctttcat
agatttgtgtacaaatgtaatttcagtttttactttagaacatgcaaacc
tattggtgatccctggagtgataatataggatcccttggaaaatatgatt
atattcagtaaatatcaggttagtttatcttatatgcatatagaagaaaa
tgtcatacaaaaacaagtattatttttttcaaatagccccctctctcaat
gacctatactaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_96663112_96664255
seq2: B6Ng01-148O19.b_47_1173 (reverse)

seq1  CTTTGGACTTTTAAAAAAATTGTTGAGACTAGTATAGA-CTATGGGGAAT  49
      |||| ||||||  |||||| ||||||||||||  |||| ||||||   | 
seq2  CTTT-GACTTT--AAAAAAATGTTGAGACTAGATTAGACCTATGG---AA  44

seq1  TTTGTAGTTTTCCTAAATGTATTTTACATTATGTTATGGATGCAATCCTG  99
      |||| || |||||||||  ||||||||| ||| |||  ||||||   |||
seq2  TTTGAAG-TTTCCTAAA--TATTTTACA-TAT-TTA--GATGCA--TCTG  85

seq1  AGAGACAGTAG-AATATGGTGTTGTGAATATGTATGGCCTCTAT-AGATT  147
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  AGAGACAGTAGAAATATGGTGTTGTGAATATGTATGGCCTCTATAAGATT  135

seq1  TATGTGTTTGAATGTTTGACCCATGGCAAGTGGCACTGTTAGGAGGTGTG  197
      ||||   |||||||||||||||||||||||||||||||||||||||||| 
seq2  TATGGTGTTGAATGTTTGACCCATGGCAAGTGGCACTGTTAGGAGGTGT-  184

seq1  GCCTTATTAGGATAGGTGTGGCCTTGTTCGAGGCCATGTGACAGTGTGGG  247
      ||||||||||||||||||||  | ||||||||||||||||||||||||||
seq2  GCCTTATTAGGATAGGTGTG--CCTGTTCGAGGCCATGTGACAGTGTGGG  232

seq1  CCTGCCTTTAGGTCTCCTATGCTGAAGCTCTGTCCACTGTAAAATCCAGT  297
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  -CTGCCTTTAGGTCT-CTATGCTGAAGCTCTGTCCACTGTAAAATCCAGT  280

seq1  ACCGTTGTGCTAGCTTTGAATCAAGATGGAGACCTCACAGCTACTCTGGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTTGTGCTAGCTTTGAATCAAGATGGAGACCTCACAGCTACTCTGGC  330

seq1  CCCAAGTCTTCCTATGCTGTCATGCTGCCATCCTGATGGCAGTGGACTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTCTTCCTATGCTGTCATGCTGCCATCCTGATGGCAGTGGACTAA  380

seq1  TTCTCTGAAGCTGTAAGGTGATCCCAAATATATGCTGTCTTTTATAAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAAGCTGTAAGGTGATCCCAAATATATGCTGTCTTTTATAAGAG  430

seq1  TTGCCTTCATCATGATGTCTCTTTACAGTACTAAAATTCTAAATAAGACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTCATCATGATGTCTCTTTACAGTACTAAAATTCTAAATAAGACA  480

seq1  GGAGGAATGGATCTGGGAGGATGAAAGGGAAATGTTATCATGATGAAAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAATGGATCTGGGAGGATGAAAGGGAAATGTTATCATGATGAAAAC  530

seq1  ACAGGGTAAAGCACTTATAATGGGGCACTTATTAAATAAGAGACAACACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTAAAGCACTTATAATGGGGCACTTATTAAATAAGAGACAACACT  580

seq1  CAGCACACACAGAATAAAAAACAGATGCTGAGAAATTAATTCTTTAATGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACACAGAATAAAAAACAGATGCTGAGAAATTAATTCTTTAATGT  630

seq1  GATAATATATTACTAGACTTTTGCTTTGAACACAAGATCATGAAAAATAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATATATTACTAGACTTTTGCTTTGAACACAAGATCATGAAAAATAA  680

seq1  GTTTGCTCTCCAGAAAACATTACAAATTGTTTAAAATTGATCCTACATAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTCTCCAGAAAACATTACAAATTGTTTAAAATTGATCCTACATAT  730

seq1  AGCCAATTTCTCTGTCAAGTTTCACCTATAAATTAGCACACATTAAAATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATTTCTCTGTCAAGTTTCACCTATAAATTAGCACACATTAAAATA  780

seq1  ATAAACAGTAAGAGTGCATATTAATATGAGATAAAATATTATGGTCAGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGTAAGAGTGCATATTAATATGAGATAAAATATTATGGTCAGGA  830

seq1  TTAAATTGCATCTTTTATTTTATAGTGTAAAATGTTATAAGTAACTGCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGCATCTTTTATTTTATAGTGTAAAATGTTATAAGTAACTGCCA  880

seq1  TTGAAGCCTGATTTCCAGTGCTTATTTTTATTAAGTATTTGTCATCCCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCCTGATTTCCAGTGCTTATTTTTATTAAGTATTTGTCATCCCCT  930

seq1  AAATTCCTGTTTCATACATTTCTCTCTGATTCTCCAACATATTTGGAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTGTTTCATACATTTCTCTCTGATTCTCCAACATATTTGGAAAA  980

seq1  GATAATGGTACTTATGCTGAATTGTAGTAAATTGGGAAATTGTTTAATGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGGTACTTATGCTGAATTGTAGTAAATTGGGAAATTGTTTAATGG  1030

seq1  CTCAGAAATTTCTCACAGATGACTGGCTTGAGACTAACATACTCTTGATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATTTCTCACAGATGACTGGCTTGAGACTAACATACTCTTGATT  1080

seq1  ATTTATTACTTCATTTGCAGGTCTGTACTGGCCGGTTTATTGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTACTTCATTTGCAGGTCTGTACTGGCCGGTTTATTGAATTC  1127

seq1: chr14_96521178_96522294
seq2: B6Ng01-148O19.g_69_1182

seq1  GAATTCTAGAGGGATGTTTTTGTGGACAGACATATTCACAATGCAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGGGATGTTTTTGTGGACAGACATATTCACAATGCAAATAT  50

seq1  TTTGGCCTGACAATTGCACTTAGATATTAATCCATAGGAGTGAGGCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCTGACAATTGCACTTAGATATTAATCCATAGGAGTGAGGCTCTT  100

seq1  GAGACAGAGTCAGTATTAAAGATTAATCATCTACAATGACTATATGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGTCAGTATTAAAGATTAATCATCTACAATGACTATATGTACA  150

seq1  TACATGCAACTATTATTAGTATAAACTTATTAATATTCCCCAGACACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCAACTATTATTAGTATAAACTTATTAATATTCCCCAGACACAGT  200

seq1  TTTCTTAATTTTATGACCCAAATCAGAACCTTAAGCTTATTAAGGCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAATTTTATGACCCAAATCAGAACCTTAAGCTTATTAAGGCATAT  250

seq1  AAATTGTGCCTACTGTATATTCAACAAAATAAAAGTTTTGAGTTTTACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTGCCTACTGTATATTCAACAAAATAAAAGTTTTGAGTTTTACTG  300

seq1  TGCTCATCAATGGAAACATTGTTTATTAAAAGAATATCTTACCATTAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATCAATGGAAACATTGTTTATTAAAAGAATATCTTACCATTAGCT  350

seq1  TTCTAGCTAAGGTGAAAGGTAAAATAATAAAAGCAAAGTACACAACAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCTAAGGTGAAAGGTAAAATAATAAAAGCAAAGTACACAACAATT  400

seq1  GAATCAAAAGGAACATGTCTAAGAATGTTTGTACTCCCTCTGTTGTAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAAAGGAACATGTCTAAGAATGTTTGTACTCCCTCTGTTGTAAAC  450

seq1  AAGATCATGGCAATTACCAAGGTGTTTTCTACTTTCAATCGCTTTCCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCATGGCAATTACCAAGGTGTTTTCTACTTTCAATCGCTTTCCCTA  500

seq1  TAATTTATCTTGCTTTCTACACAACTCACACATTTTGGAGCTTTTCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATCTTGCTTTCTACACAACTCACACATTTTGGAGCTTTTCATGT  550

seq1  AGAATGGGATCTATTGCCTTCTATTCTGATCCTAATTACTTAAAAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGGATCTATTGCCTTCTATTCTGATCCTAATTACTTAAAAGAAAA  600

seq1  TTTTCACTCAAGATGAGCCAATCATGTATCTTCATCATGCAGGGCAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTCAAGATGAGCCAATCATGTATCTTCATCATGCAGGGCAATGG  650

seq1  AGCTTTCTTTCTGATGAACAACATCTTATTTGGATCCTATTTCCTTTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTTTCTGATGAACAACATCTTATTTGGATCCTATTTCCTTTATA  700

seq1  TTTGAAATCAACTGAGGACATAGATTATTCATTTCCTAC-TTAAGTGAAA  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTGAAATCAACTGAGGACATAGATTATTCATTTCCTACTTTAAGTGAAA  750

seq1  GATTACTAC-TTAGTGCTTCTTATAGCTTTACGTTGTGAACTGTCTCACC  798
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTACTTTAGTGCTTCTTATAGCTTTACGTTGTGAACTGTCTCACC  800

seq1  TTAGGGCAGTAACACAGAGACAGAAATGACTGGCAGTAAGAACACATTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGCAGTAACACAGAGACAGAAATGACTGGCAGTAAGAACACATTCT  850

seq1  GAAGCCTTCATGTTTTTGCTACCAGAAATTTTAAATCAAATATTCTTTCA  898
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAAGCCTTCATGTTTTTGCTACCAGAAATTTTAAATCAAATA-TCTTTCA  899

seq1  TAGATTTGTGTACAAATGTAATTTCAGTTTTTACTTTAGAACATGCAAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTGTGTACAAATGTAATTTCAGTTTTTACTTTAGAACATGCAAAC  949

seq1  CTATTGGTGATCCTTGGAGTGATTAATTATAAGGTATCCTTG--AAATAT  996
      ||||||||||||| |||||||||  | ||| |||   |||||  ||||||
seq2  CTATTGGTGATCCCTGGAGTGAT--AATAT-AGGATCCCTTGGAAAATAT  996

seq1  TGATATATTTCAGT-AATATCAGGTTAGTTTATCTTATATTGCATATAGA  1045
         |||| |||||| |||||||||||||||||||||||| ||||||||||
seq2  GATTATA-TTCAGTAAATATCAGGTTAGTTTATCTTATA-TGCATATAGA  1044

seq1  AGAAAATGTCATACAAAACAAATTATTTATTTTTTTCAAATACCCCCCTC  1095
      ||||||||||||||||||  || || |||||||||||||||| |||||||
seq2  AGAAAATGTCATACAAAAACAAGTA-TTATTTTTTTCAAATAGCCCCCTC  1093

seq1  TCTCCATGACCTATTACTAAGT  1117
      |||| |||||||| ||||||||
seq2  TCTCAATGACCTA-TACTAAGT  1114