BAC Information

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BAC

Clone NameB6Ng01-150D13
Chromosome14 (Build37)
Map Location 89,532,003 - 89,533,167
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150D13.bB6Ng01-150D13.g
ACCDH946358DH946359
length1,2361,143
definitionDH946358|Mus musculus domesticus DNA, BAC clone: B6Ng01-150D13, 5' end.DH946359|Mus musculus domesticus DNA, BAC clone: B6Ng01-150D13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaggataggaattcaagcctggaaagaacctggaggccgcagctg
atgcaggggtcacagaggtgtgttgtttgcctcccatggcaaaggctact
gctgtgagatgtacagtagagatgttatacctgactttaaatgaatgtta
tttcttgtagaatacaagaccattagcctagggattgctaccacccacaa
tggacatcatcatagcatcaaacactaacggagaaaatgccctaaattct
tacccacagcctgatcttatagaagtagttttcttaattaaggtttcctt
ctgtcagatgaatttagtttatgtcaaactgacataaaactatccagcac
aattgaacttgatatacaacttgatacaaaaacatattaccataaagccg
taagcttttctatctccttcattcaaagatctcccattgagaagacaaat
aaactttatatgtctcaaattatttacatatttcattgtattaaaatatc
agtaattatagtaattacagcttgtgctgtaagatcaagaatcgacaaat
gggacctcataaaatttcaaagcttctgtaaggcaaaagagactgtcatt
aagacaaaaaggacaccaacagattggggaaggaattttaccaatcctaa
acctgataggggactaatatccaatatatacaaagagctcaagaagctgg
actccagaaactcaaactgaagaataccgaaaggctgagaggcacctgaa
ataaatgttcaacatccttaatagtcaggtaaatgcaaatcaaaacaagc
ctgagattccacctcattctgactggtgagtcagaatggctaagatcaaa
aattcagtgacagcagatgttggtgaagatgtggagaaagaggaacactc
ctccattgctggtaggattgcaagcttgtacaaccacttggaaatcactc
tggtggttgctcagaaattggacatagtactactggatgatccagcatac
ctctctgggcatatatccagaagatgttccacgggtagagacacatgctt
cactatgttcatagcagccttaatttatatagcagaagctgtaagaacac
agaatgtccctcaccgagatggatcagaaatgtggttacataccatggag
tactatcttgaaattaagacatgaattctggattgcaactcgttgtccta
agtccactttgttcactcttaacctctctccacgat
gaattcaataataattaatagtagtttcagcaaatcagtaatgaattctt
gatatagaaatctcatagactatgattttaaaacttctgcgtactcacag
aatataactttcctaaatatatcattaagatagaactgtttcttttgaaa
tagatcaggaaggtcttttcttacacacagtgaatagtttaatatgtggt
tgcaaaattcaaaaatatactaaagtataaatatgtgataaaattataga
attatacttgatactaaaaagatatataccaaaataaaaataaactttat
catgtatcatgtataaatgctgaacatgagaatttaaagctatctattaa
ataattgacatttcatatcttatattttaataatagtaatgatcttatat
acctgtataacttgaagatattaattttaattaaaaatctctgttcaatt
caaatttttatctgtttattcagtgttccatcaattccaaactctggtat
tcacattctttaccagagtatgaccaaaccatcataaaccagagttgaag
taagttactttcccttatacagctgaggactatctacccagacgtgtcca
gctgtccactgatatttaggccttgaagctgaataatcagactgagtgat
cctgcattgcattgatagcctatacctcaagaactctctgaagcactaat
tatatattttgaagaatagtaggatgaacctgctatatttatggaggatt
catttgtatgttcacaattagtgcagttttaggtttaatggactgcacaa
tatacattttttagtccactcagatcaacacctagaatttccagaatgtt
tagggttagaaagacatcccagtaattcaaaatatttggtgttcttctag
atgggcacagttagttcacagcacctacctgagtagatcacacactatga
gttcatctctagagatgcaaagcctctgttctctgcagcacctgcactct
gacacttactcttattagactacaaacacgaaccacaattaaaaatacaa
attcatctgctttacaaaaagagaagaattccacatcttaagttatcaat
ttgcctttataatagataaaatatattccaatgctattatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89532003_89533167
seq2: B6Ng01-150D13.g_69_1211 (reverse)

seq1  TTGATAATAGCATTGAAATATATGTCTAAATTCTATTATTAAAGGCAAAA  50
      ||||||||||||||| ||||||| | ||   ||||||| |||||||||| 
seq2  TTGATAATAGCATTGGAATATAT-TTTA---TCTATTA-TAAAGGCAAAT  45

seq1  TGAATAAATTTAAGATGTGGAGATTCTTTCTCTTTTTGTAAAGCAGATGA  100
      |||   || |||||||||||| |||| |||||||||||||||||||||||
seq2  TGA--TAACTTAAGATGTGGA-ATTC-TTCTCTTTTTGTAAAGCAGATGA  91

seq1  ATTTTGTTATTTTTAATTTGTGGTTCGTGTTTGTAAGTCTAAATAAGAGT  150
      ||||   ||||||||| ||||||||||||||||| ||||| |||||||||
seq2  ATTT--GTATTTTTAA-TTGTGGTTCGTGTTTGT-AGTCT-AATAAGAGT  136

seq1  AAGTGTTCAGGAGTGCAGGTGCTTGCAGAGAACAGAGGCTTTGCATCTCT  200
      ||||| ||| |||||||||||| |||||||||||||||||||||||||| 
seq2  AAGTG-TCA-GAGTGCAGGTGC-TGCAGAGAACAGAGGCTTTGCATCTC-  182

seq1  TAGAGATGAACTCATAGGTGGTGT-TGATCTACTCAGGTAGGTGCTGTGA  249
      ||||||||||||||||    |||| |||||||||||||||||||||||||
seq2  TAGAGATGAACTCATA----GTGTGTGATCTACTCAGGTAGGTGCTGTGA  228

seq1  ACTAACTGTGGCCATCTAGAAGAACACCAAATATTTTGAATTACTGGGAT  299
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTGTGCCCATCTAGAAGAACACCAAATATTTTGAATTACTGGGAT  278

seq1  GTCTTTCTAACCCTAAACATTCTGGAAATTTCTAGGTGTTGATCTGAGTG  349
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTCTTTCTAACCCTAAACATTCTGGAAA-TTCTAGGTGTTGATCTGAGTG  327

seq1  GACTAAAAAATGTATATTGTGCAGTCCATTAAACCTAAAACTGCACTAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAAAATGTATATTGTGCAGTCCATTAAACCTAAAACTGCACTAAT  377

seq1  TGTGAACATACAAATGAATCCTCCATAAATATAGCAGGTTCATCCTACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACATACAAATGAATCCTCCATAAATATAGCAGGTTCATCCTACTA  427

seq1  TTCTTCAAAATATATAATTAGTGCTTCAGAGAGTTCTTGAGGTATAGGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAAAATATATAATTAGTGCTTCAGAGAGTTCTTGAGGTATAGGCT  477

seq1  ATCAATGCAATGCAGGATCACTCAGTCTGATTATTCAGCTTCAAGGCCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGCAATGCAGGATCACTCAGTCTGATTATTCAGCTTCAAGGCCTA  527

seq1  AATATCAGTGGACAGCTGGACACGTCTGGGTAGATAGTCCTCAGCTGTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGTGGACAGCTGGACACGTCTGGGTAGATAGTCCTCAGCTGTAT  577

seq1  AAGGGAAAGTAACTTACTTCAACTCTGGTTTATGATGGTTTGGTCATACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAAGTAACTTACTTCAACTCTGGTTTATGATGGTTTGGTCATACT  627

seq1  CTGGTAAAGAATGTGAATACCAGAGTTTGGAATTGATGGAACACTGAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAAGAATGTGAATACCAGAGTTTGGAATTGATGGAACACTGAATA  677

seq1  AACAGATAAAAATTTGAATTGAACAGAGATTTTTAATTAAAATTAATATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATAAAAATTTGAATTGAACAGAGATTTTTAATTAAAATTAATATC  727

seq1  TTCAAGTTATACAGGTATATAAGATCATTACTATTATTAAAATATAAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTATACAGGTATATAAGATCATTACTATTATTAAAATATAAGAT  777

seq1  ATGAAATGTCAATTATTTAATAGATAGCTTTAAATTCTCATGTTCAGCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGTCAATTATTTAATAGATAGCTTTAAATTCTCATGTTCAGCAT  827

seq1  TTATACATGATACATGATAAAGTTTATTTTTATTTTGGTATATATCTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACATGATACATGATAAAGTTTATTTTTATTTTGGTATATATCTTTT  877

seq1  TAGTATCAAGTATAATTCTATAATTTTATCACATATTTATACTTTAGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCAAGTATAATTCTATAATTTTATCACATATTTATACTTTAGTAT  927

seq1  ATTTTTGAATTTTGCAACCACATATTAAACTATTCACTGTGTGTAAGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGAATTTTGCAACCACATATTAAACTATTCACTGTGTGTAAGAAA  977

seq1  AGACCTTCCTGATCTATTTCAAAAGAAACAGTTCTATCTTAATGATATAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCCTGATCTATTTCAAAAGAAACAGTTCTATCTTAATGATATAT  1027

seq1  TTAGGAAAGTTATATTCTGTGAGTACGCAGAAGTTTTAAAATCATAGTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAAGTTATATTCTGTGAGTACGCAGAAGTTTTAAAATCATAGTCT  1077

seq1  ATGAGATTTCTATATCAAGAATTCATTACTGATTTGCTGAAACTACTATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATTTCTATATCAAGAATTCATTACTGATTTGCTGAAACTACTATT  1127

seq1  AATTATTATTGAATTC  1165
      ||||||||||||||||
seq2  AATTATTATTGAATTC  1143