BAC Information

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BAC

Clone NameB6Ng01-150I18
Chromosome14 (Build37)
Map Location 112,111,556 - 112,216,869
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494, Slitrk5
Downstream geneLOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150I18.bB6Ng01-150I18.g
ACCDH946599DH946600
length1,1191,066
definitionDH946599|Mus musculus domesticus DNA, BAC clone: B6Ng01-150I18, 5' end.DH946600|Mus musculus domesticus DNA, BAC clone: B6Ng01-150I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,111,556 - 112,112,780)(112,215,793 - 112,216,869)
sequence
gaattcacatacttatgtgttttactgactgacatatgtacccattctca
ccactatgtattaaaattacagataaatattggatactaagaaaaagaaa
atactccttttccagggacaatctacccacttgggttatccaatatttat
tgattacacctaaaaacacatacatatgcacagtactaggtagacataga
actttgtatttatagaaacataaatatataaaaatatatatgattattaa
tatagtcttcataccagaaaaattaatttttattaatattattgttttaa
ttcaatatgttttaatgactgctttcattttactagttctgtgagaattt
tgaatggcgtatttttattatatttcagtaaaaattaaaggagagttgct
gaatttttgaaggagtggtagaggatcttgagaattttgaggtagaaagg
agtgtgaaaatgatgtaaatacagttttcacatataaaattttcaaggaa
tattttaaattaaattgaaaacaagcaaacagaaaaccctgagaactaca
aatgtgaaggttgtaggcaaacaggatcatttattcaactattggttcga
ctagaaaagagtacatgcacttaacaagacattgtgacaagttcttttcc
aggtaagcatagtttttaaatataaaaacattttaaagttactattgatg
atttaaaatgaactgttcactgcaattattttgtccttcagagtattcct
ttgcagtttttacccaggagatagacaacaaaaaaaggacaccttggtcc
ttgtggatagaaataattcataagtgtgctggtaccatgggaacagtcaa
tgctataaaagagagcgttgacattttccttggtcttttaaagacacaaa
attctgactgtctataacatttttgaaagtatttgaaatgtgttatttac
aggcttgtatgttaggtggcttttttttattagtactctaaagctttatg
gagtgtttgtttgctatattcttcttcactgaggtgacttctacagtcct
ctccccactgtaggcatttatctaagtccctctctttgagtctgagcatc
tctcactccagtcctgtca
gaattcttttagtgtttaatacggatatgaacatatttcctagccaaact
agctattattgtgcatctcatctcgttttaattaaattcaaattattact
tcagagactagtatcatcgtatagtgaaataattattattatatgtttaa
tgtatcctaaattgccccatcatcttctttcataatgaagttcagctgtt
tgaattagccagattggtttctttacattaaaattaaatcttcaacatat
atgggatggattttgttgttaggttacatgctataagcctaggttacgaa
gacaaatagaatatacctatcctatgattttaaaaaaatctataaaatgt
actgttggcttagatttttaggttttcagtgattctatatatttagcatg
taactatattaatttggggaaattgatgcatttggcaatgcatagctcta
tcaaaacagcaatcatttctgtcacactggaatgtttattgtgtcatctc
accctctccacactttgcattcacccatgtgactgcacctacattttgac
ccttctgaaatttcacgtaagtaaaaccttgaaatgtattctacattcct
attgaagatttttactattttttacattaaatccaataagccattgaatt
ttattttttgttactgttgttccagtagggtttctctgaaggaggaacat
atctgtcggaatggatatgtactacaaagggctttactagagtcctcttt
tttgagatatgggttttgtggggtaataattgttttattgtggttacttc
tgaatttcagagtgtgtttcattgaataagtatgataatattgcttatga
aattttctgttgctctaagacaccctagtttaaactattgtgaacaaaca
gtaaatagtttatcaaacatcattaccacagctttcatactgtcaaataa
acttagatggatatgactgttgtctactatagaactatctttaaatttta
gaaacatcctcaagagggtttccccttaccatttctatataaaacattga
agatttagtatgcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112111556_112112780
seq2: B6Ng01-150I18.b_44_1162

seq1  GAATTCACATACTTATGTGTTTTACTGACTGACATATGTACCCATTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATACTTATGTGTTTTACTGACTGACATATGTACCCATTCTCA  50

seq1  CCACTATGTATTAAAATTACAGATAAATATTGGATACTAAGAAAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATGTATTAAAATTACAGATAAATATTGGATACTAAGAAAAAGAAA  100

seq1  ATACTCCTTTTCCAGGGACAATCTACCCACTTGGGTTATCCAATATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCTTTTCCAGGGACAATCTACCCACTTGGGTTATCCAATATTTAT  150

seq1  TGATTACACCTAAAAACACATACATATGCACAGTACTAGGTAGACATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACACCTAAAAACACATACATATGCACAGTACTAGGTAGACATAGA  200

seq1  ACTTTGTATTTATAGAAACATAAATATATAAAAATATATATGATTATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTATTTATAGAAACATAAATATATAAAAATATATATGATTATTAA  250

seq1  TATAGTCTTCATACCAGAAAAATTAATTTTTATTAATATTATTGTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCTTCATACCAGAAAAATTAATTTTTATTAATATTATTGTTTTAA  300

seq1  TTCAATATGTTTTAATGACTGCTTTCATTTTACTAGTTCTGTGAGAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATGTTTTAATGACTGCTTTCATTTTACTAGTTCTGTGAGAATTT  350

seq1  TGAATGGCGTATTTTTATTATATTTCAGTAAAAATTAAAGGAGAGTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGCGTATTTTTATTATATTTCAGTAAAAATTAAAGGAGAGTTGCT  400

seq1  GAATTTTTGAAGGAGTGGTAGAGGATCTTGAGAATTTTGAGGTAGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTGAAGGAGTGGTAGAGGATCTTGAGAATTTTGAGGTAGAAAGG  450

seq1  AGTGTGAAAATGATGTAAATACAGTTTTCACATATAAAATTTTCAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAAAATGATGTAAATACAGTTTTCACATATAAAATTTTCAAGGAA  500

seq1  TATTTTAAATTAAATTGAAAACAAGCAAACAGAAAACCCTGAGAACTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAATTAAATTGAAAACAAGCAAACAGAAAACCCTGAGAACTACA  550

seq1  AATGTGAAGGTTGTAGGCAAACAGGATCATTTATTCAACTATTGGTTCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAAGGTTGTAGGCAAACAGGATCATTTATTCAACTATTGGTTCGA  600

seq1  CTAGAAAAGAGTACATGCACTTAACAAGACATTGTGACAAGTTCTTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAGAGTACATGCACTTAACAAGACATTGTGACAAGTTCTTTTCC  650

seq1  AGGTAAGCATAGTTTTTAAATATAAAAACATTTTAAAGTTACTATTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGCATAGTTTTTAAATATAAAAACATTTTAAAGTTACTATTGATG  700

seq1  ATTTAAAATGAACTGTTCACTGCAATTATTTTGTCCTTCAGAGTATTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATGAACTGTTCACTGCAATTATTTTGTCCTTCAGAGTATTCCT  750

seq1  TTGCAGTTTTTACCCAGGAGATAGACAACAAAAAAAGGACACCTTGGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTTTTACCCAGGAGATAGACAACAAAAAAAGGACACCTTGGTCC  800

seq1  TTGTGGATAGAAATAATTCATAAGTGTGCTGGTACCAT-GGAACAGTCAA  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGTGGATAGAAATAATTCATAAGTGTGCTGGTACCATGGGAACAGTCAA  850

seq1  TGCTATAAAAGAGAGCGTTGACATTTTCCTTGGTCTTTTAAAGACACAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAAAAGAGAGCGTTGACATTTTCCTTGGTCTTTTAAAGACACAAA  900

seq1  ATTCTGACTGTCTATAACATTTTTGAAAAGTATTTTGAAATGTGTTAATT  949
      ||||||||||||||||||||||||| |||||| ||||||||||||| |||
seq2  ATTCTGACTGTCTATAACATTTTTG-AAAGTA-TTTGAAATGTGTT-ATT  947

seq1  TACAGGCTTGTTATGTTAGGTGGCTTTTTTTTTATTTAGTACTCTAAAGC  999
      |||||||||| |||||||||||||||||||||   |||||||||||||||
seq2  TACAGGCTTG-TATGTTAGGTGGCTTTTTTTT--ATTAGTACTCTAAAGC  994

seq1  TTTATGGAGTGTTTGTTTTGCTATAATTCTTCCTTCAACTGGAGGTGGAC  1049
      ||||||||||||||| |||||||| |||||| |||| ||| ||||||   
seq2  TTTATGGAGTGTTTG-TTTGCTAT-ATTCTT-CTTC-ACT-GAGGTGACT  1039

seq1  TCTACAAGTTCCTCTCCCCACTGTAGGGCATTTTATCTAAGGTCCCTCTC  1099
      ||||||   |||||||||||||||| |||| ||||||||| |||||||||
seq2  TCTACA--GTCCTCTCCCCACTGTA-GGCA-TTTATCTAA-GTCCCTCTC  1084

seq1  TTTGAGTCCTGAGCATCTCTCACCTCCCAAGTCTCTGGCACATTCTAGAG  1149
      ||||||| |||||||||||||| ||||  |||| ||| ||          
seq2  TTTGAGT-CTGAGCATCTCTCA-CTCC--AGTC-CTGTCA----------  1119

seq1  GCTCCCCCTACCTCCTACCTCCTGAGGTTGCCTGTTTCCATTCTTTCTGC  1199
                                                        
seq2  --------------------------------------------------  1119

seq1  TGGCCCTCAGGGCTTCAGTCCTGTCA  1225
                                
seq2  --------------------------  1119

seq1: chr14_112215793_112216869
seq2: B6Ng01-150I18.g_68_1133 (reverse)

seq1  GGTGCCATACTAAATCTTCAATGTTTTCTATAGAATGTGATAGGGGAAAC  50
      |||| |||||||||||||||||||||| |||||||   |  |||||||||
seq2  GGTG-CATACTAAATCTTCAATGTTTTATATAGAAATGGTAAGGGGAAAC  49

seq1  CACTCTAGAAGAATGTTTCATAAAAATTTAAAGATAGTTCTATTAGTAGA  100
      | |||| | || |||||||   |||||||||||||||||||| |||||||
seq2  C-CTCTTG-AGGATGTTTC--TAAAATTTAAAGATAGTTCTA-TAGTAGA  94

seq1  CAACAGTCATATCCATCTATGTTTATTTGACAGTATTGAAAGCCTGTGGT  150
      ||||||||||||||||||| ||||||||||||||| |||||| |||||||
seq2  CAACAGTCATATCCATCTAAGTTTATTTGACAGTA-TGAAAG-CTGTGGT  142

seq1  AATGATGTTTGATAAACTATTTACTGTTTTGTTCACAATAGTTTTAAACT  200
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  AATGATGTTTGATAAACTATTTACTG-TTTGTTCACAATAG-TTTAAACT  190

seq1  AGGGATGTCTTAGAGCAACAGAAAATTTCATAAGCAATATTATCATACTT  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGG-TGTCTTAGAGCAACAGAAAATTTCATAAGCAATATTATCATACTT  239

seq1  ATTCAATGAAACACACTCTGAAATTCAGAAGTAACCACAATAAAACAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATGAAACACACTCTGAAATTCAGAAGTAACCACAATAAAACAATT  289

seq1  ATTACCCCACAAAACCCATATCTCAAAAAAGAGGACTCTAGTAAAGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCCACAAAACCCATATCTCAAAAAAGAGGACTCTAGTAAAGCCCT  339

seq1  TTGTAGTACATATCCATTCCGACAGATATGTTCCTCCTTCAGAGAAACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTACATATCCATTCCGACAGATATGTTCCTCCTTCAGAGAAACCC  389

seq1  TACTGGAACAACAGTAACAAAAAATAAAATTCAATGGCTTATTGGATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAACAACAGTAACAAAAAATAAAATTCAATGGCTTATTGGATTTA  439

seq1  ATGTAAAAAATAGTAAAAATCTTCAATAGGAATGTAGAATACATTTCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAAAATAGTAAAAATCTTCAATAGGAATGTAGAATACATTTCAAG  489

seq1  GTTTTACTTACGTGAAATTTCAGAAGGGTCAAAATGTAGGTGCAGTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTTACGTGAAATTTCAGAAGGGTCAAAATGTAGGTGCAGTCACA  539

seq1  TGGGTGAATGCAAAGTGTGGAGAGGGTGAGATGACACAATAAACATTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAATGCAAAGTGTGGAGAGGGTGAGATGACACAATAAACATTCCA  589

seq1  GTGTGACAGAAATGATTGCTGTTTTGATAGAGCTATGCATTGCCAAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACAGAAATGATTGCTGTTTTGATAGAGCTATGCATTGCCAAATGC  639

seq1  ATCAATTTCCCCAAATTAATATAGTTACATGCTAAATATATAGAATCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTCCCCAAATTAATATAGTTACATGCTAAATATATAGAATCACT  689

seq1  GAAAACCTAAAAATCTAAGCCAACAGTACATTTTATAGATTTTTTTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTAAAAATCTAAGCCAACAGTACATTTTATAGATTTTTTTAAAA  739

seq1  TCATAGGATAGGTATATTCTATTTGTCTTCGTAACCTAGGCTTATAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGATAGGTATATTCTATTTGTCTTCGTAACCTAGGCTTATAGCAT  789

seq1  GTAACCTAACAACAAAATCCATCCCATATATGTTGAAGATTTAATTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTAACAACAAAATCCATCCCATATATGTTGAAGATTTAATTTTAA  839

seq1  TGTAAAGAAACCAATCTGGCTAATTCAAACAGCTGAACTTCATTATGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGAAACCAATCTGGCTAATTCAAACAGCTGAACTTCATTATGAAA  889

seq1  GAAGATGATGGGGCAATTTAGGATACATTAAACATATAATAATAATTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGATGGGGCAATTTAGGATACATTAAACATATAATAATAATTATT  939

seq1  TCACTATACGATGATACTAGTCTCTGAAGTAATAATTTGAATTTAATTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATACGATGATACTAGTCTCTGAAGTAATAATTTGAATTTAATTAA  989

seq1  AACGAGATGAGATGCACAATAATAGCTAGTTTGGCTAGGAAATATGTTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGATGAGATGCACAATAATAGCTAGTTTGGCTAGGAAATATGTTCA  1039

seq1  TATCCGTATTAAACACTAAAAGAATTC  1077
      |||||||||||||||||||||||||||
seq2  TATCCGTATTAAACACTAAAAGAATTC  1066