BAC Information

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BAC

Clone NameB6Ng01-152P13
Chromosome17 (Build37)14 (Build37)
Map Location 57,292,058 - 57,293,11172,437,408 - 72,437,858
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70
Downstream geneTnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916, Cntnap5c, LOC674419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152P13.bB6Ng01-152P13.g
ACCDH948413DH948414
length1,096613
definitionDH948413|Mus musculus domesticus DNA, BAC clone: B6Ng01-152P13, 5' end.DH948414|Mus musculus domesticus DNA, BAC clone: B6Ng01-152P13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(57,292,058 - 57,293,111)(72,437,408 - 72,437,858)
sequence
gaattctagcaggcaggaagacttggggggatgagggggacaggacagga
ccaattcacccctgaccacaccagcatccctcccccagagaaatctaagc
agggactccacccctgagccacgcccccaaggccagtggatgagtgtgga
tgaatgggcaacacttgccaactctatactgctctagcttccatcctcac
cactgcaaataataataataataataataataataaacatgatgtaaatc
attggtacatggattctttataaagttcaaagtcctccagcagttaattt
cctagtgtactgcatagttttatgtcaatacaaatagggttggacaaggc
atgactgcatttccttgattaatgttcaatgtaggagggcccagcacaca
acatttccatggagatggtcctaagccctacaagaatgtaggctgagcaa
gtcagtaagccagagatccccctaggctcctgcttcagtcctgccttctc
tcgatgatgaggaactataaagaggaacaaatccttccctctccaaggtc
acggtgttcatcaacaataaaacctctagcatgaaccacatacattagat
gcctcaaagcccccaaaatggagctgaagaaatgagttagttatgagcac
cggctgggactctcgctgactctggagggctccatttcagctaggctgat
cgatgagctgcggcaatcctcctgtctctgcttctcagcaggctaccatt
acagacaggcactgatgaaccccactttcaggtatcaaactcagagttcc
cattcttgcttgatggggcctgtaccagtaactttaattttttttcagac
cttatttcaatgatgattcttaaacactttaaccttccttatagcccacc
acccaccagaggtagtgggaagaaaggatacaggaaagtggacctgttta
gaaaggttctttggagcaactcctgcttttgttgtcaggaaagaagttca
ccagttagcagccgcagcttgattcactcacaaacacttcacggacaacc
agcagtccagtttggtagagtcaagaaatgcaaacatgatgaatcc
gaattctcagcaccccttctgccttagtacctgagtgctacgacatgccc
atgacagtttggggtggggcagggtcttattctggagaccaggttggcct
cgaactcatggaagttcttctgcatagctttccatgtgctacctggctaa
agcgctttaaaacattaaaatatatatttattttaaagcgtgtgtatgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatcggggattgaaaacta
aatatgtgacatcagctgtggtgtcaacgccttcagaatgagatgggaag
gtgtcgcgtccgctctcgaccagcaagaacgacacgaccaccagtccttc
taacagcagtttattcagtcctgattcttcttgtttatatctcccccgaa
ccctgggcctctcactccttttatactctcatccacgcacagcaggccac
gccgcctcaccaggcacgcagcttcagctaatcagggcagcaggggcata
tctccatcaaactggattcaccggtatcctggtgcacctgcgcagctctc
aagatgtttgtggcttatatgaggaagtcaggtgcaagtcatacgactta
actacagttccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_57292058_57293111
seq2: B6Ng01-152P13.b_91_1140 (reverse)

seq1  GGATTCATTCCTGTTTGC-TATCTTGACTCTACCAAACTGGACTGCTGGT  49
      ||||||| || ||||||| | |||||||||||||||||||||||||||||
seq2  GGATTCA-TCATGTTTGCATTTCTTGACTCTACCAAACTGGACTGCTGGT  49

seq1  GTGTCCGTGAAGTGTTTGTGAGTGGATCAAGCTGCGGCTGCTAACCTGTG  99
       ||||||||||||||||||||||| ||||||||||||||||||||  |||
seq2  -TGTCCGTGAAGTGTTTGTGAGTGAATCAAGCTGCGGCTGCTAACTGGTG  98

seq1  AACTTCTTTCCTGACAACACAGGCAGGAGTTGCTCCAAAGAACCTTTCTA  149
      ||||||||||||||||||| | ||||||||||||||||||||||||||||
seq2  AACTTCTTTCCTGACAACAAAAGCAGGAGTTGCTCCAAAGAACCTTTCTA  148

seq1  AACAGGTCCACTTCTCCTGTATCCTTTCTTTCCCACTACCTCTGGTGGGT  199
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  AACAGGTCCACTT-TCCTGTATCCTTTC-TTCCCACTACCTCTGGTGGGT  196

seq1  GGTGGGCTATAAGGAAGGTTAAAGTGTTTAAGAATCATCATTGAAAATAA  249
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGTGGGCTATAAGGAAGGTTAAAGTGTTTAAGAATCATCATTG-AAATAA  245

seq1  GGTCTGAAAAAAAATTAAAGTTACTGGTACAGGCCCCATCAAGCAAGAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAAAAAAAATTAAAGTTACTGGTACAGGCCCCATCAAGCAAGAAT  295

seq1  GGGAACTCTGAGTTTGATACCTGAAAGTGGGGTTCATCAGTGCCTGTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTCTGAGTTTGATACCTGAAAGTGGGGTTCATCAGTGCCTGTCTG  345

seq1  TAATGGTAGCCTGCTGAGAAGCAGAGACAGGAGGATTGCCGCAGCTCATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTAGCCTGCTGAGAAGCAGAGACAGGAGGATTGCCGCAGCTCATC  395

seq1  GATCAGCCTAGCTGAAATGGAGCCCTCCAGAGTCAGCGAGAGTCCCAGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCCTAGCTGAAATGGAGCCCTCCAGAGTCAGCGAGAGTCCCAGCC  445

seq1  GGTGCTCATAACTAACTCATTTCTTCAGCTCCATTTTGGGGGCTTTGAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCATAACTAACTCATTTCTTCAGCTCCATTTTGGGGGCTTTGAGG  495

seq1  CATCTAATGTATGTGGTTCATGCTAGAGGTTTTATTGTTGATGAACACCG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAATGTATGTGGTTCATGCTAGAGGTTTTATTGTTGATGAACACCG  545

seq1  TGACCTTGGAGAGGGAAGGATTTGTTCCTCTTTATAGTTCCTCATCATCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGGAGAGGGAAGGATTTGTTCCTCTTTATAGTTCCTCATCATCG  595

seq1  AGAGAAGGCAGGACTGAAGCAGGAGCCTAGGGGGATCTCTGGCTTACTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGCAGGACTGAAGCAGGAGCCTAGGGGGATCTCTGGCTTACTGA  645

seq1  CTTGCTCAGCCTACATTCTTGTAGGGCTTAGGACCATCTCCATGGAAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCAGCCTACATTCTTGTAGGGCTTAGGACCATCTCCATGGAAATG  695

seq1  TTGTGTGCTGGGCCCTCCTACATTGAACATTAATCAAGGAAATGCAGTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGCTGGGCCCTCCTACATTGAACATTAATCAAGGAAATGCAGTCA  745

seq1  TGCCTTGTCCAACCCTATTTGTATTGACATAAAACTATGCAGTACACTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTCCAACCCTATTTGTATTGACATAAAACTATGCAGTACACTAG  795

seq1  GAAATTAACTGCTGGAGGACTTTGAACTTTATAAAGAATCCATGTACCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAACTGCTGGAGGACTTTGAACTTTATAAAGAATCCATGTACCAA  845

seq1  TGATTTACATCATGTTTATTATTATTATTATTATTATTATTATTTGCAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTACATCATGTTTATTATTATTATTATTATTATTATTATTTGCAGT  895

seq1  GGTGAGGATGGAAGCTAGAGCAGTATAGAGTTGGCAAGTGTTGCCCATTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGATGGAAGCTAGAGCAGTATAGAGTTGGCAAGTGTTGCCCATTC  945

seq1  ATCCACACTCATCCACTGGCCTTGGGGGCGTGGCTCAGGGGTGGAGTCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACACTCATCCACTGGCCTTGGGGGCGTGGCTCAGGGGTGGAGTCCC  995

seq1  TGCTTAGATTTCTCTGGGGGAGGGATGCTGGTGTGGTCAGGGGTGAATTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGATTTCTCTGGGGGAGGGATGCTGGTGTGGTCAGGGGTGAATTG  1045

seq1  GTCCT  1054
      |||||
seq2  GTCCT  1050

seq1: chr14_72437408_72437858
seq2: B6Ng01-152P13.g_299_680 (reverse)

seq1  AGGGAACTGAGGAGGCTCAAGCTGACCCCTTCCTGTTAGGAGCGGGTGTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCGGCAGTCCCAAAGGCGTCAGGG-ACTGTAGCTAAGTCGTATGACTTGC  99
                          |||| ||||||| |||||||||||||||||
seq2  --------------------AGGGAACTGTAGTTAAGTCGTATGACTTGC  30

seq1  ACCTGACTTCCTCATATAAGCCACAAACATCTTGAGAGCTGCGCAGGTGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACTTCCTCATATAAGCCACAAACATCTTGAGAGCTGCGCAGGTGC  80

seq1  ACCAGGATACCGGTGAATCCAGTTTGATGGAGATATGCCCCTGCTGCCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGATACCGGTGAATCCAGTTTGATGGAGATATGCCCCTGCTGCCCT  130

seq1  GATTAGCTGAAGCTGCGTGCCTGGTGAGGCGGCGTGGCCTGCTGTGCGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCTGAAGCTGCGTGCCTGGTGAGGCGGCGTGGCCTGCTGTGCGTG  180

seq1  GATGAGAGTATAAAAGGAGTGAGAGGCCCAGGGTTCGGGGGAGATATAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAGTATAAAAGGAGTGAGAGGCCCAGGGTTCGGGGGAGATATAAA  230

seq1  CAAGAAGAATCAGGACTGAATAAACTGCTGTTAGAAGGACTGGTGGTCGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGAATCAGGACTGAATAAACTGCTGTTAGAAGGACTGGTGGTCGT  280

seq1  GTCGTTCTTGCTGGTCGAGAGCGGACGCGACACCTTCCCATCTCATTCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTCTTGCTGGTCGAGAGCGGACGCGACACCTTCCCATCTCATTCTG  330

seq1  AAGGCGTTGACACCACAGCTGATGTCACATATTTAGTTTTCAATCCCCGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTTGACACCACAGCTGATGTCACATATTTAGTTTTCAATCCCCGA  380

seq1  TT  451
      ||
seq2  TT  382