BAC Information

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BAC

Clone NameB6Ng01-153M19
Chromosome14 (Build37)9 (Build37)
Map Location 61,439,488 - 61,440,01814,207,170 - 14,207,976
singlet/doubletsingletsinglet
Overlap geneMipep
Upstream geneAtp8a2, LOC668162, LOC628768, Nupl1, Mtmr6, 2600011E07Rik, Ppia-ps14_696.1, EG628836, Spata13, C1qtnf9
Downstream geneLOC100043586, Tnfrsf19, Sacs, Sgcg, Arl11, EG432864, Ebpl, Kpna3, LOC100042933, EG432865, 6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153M19.bB6Ng01-153M19.g
ACCDH949010DH949011
length942808
definitionDH949010|Mus musculus domesticus DNA, BAC clone: B6Ng01-153M19, 5' end.DH949011|Mus musculus domesticus DNA, BAC clone: B6Ng01-153M19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,439,488 - 61,440,018)(14,207,170 - 14,207,976)
sequence
gaattcatagccagtatgcctaaaaatctccatgccaagatccaggtcag
aaacttctatctcccagcctccagataagggtcactggtgagccttccaa
ttctagattgtagttcattccagatatagtcaagttgacaaccaggaata
gccactacaatccaccccttgtcaacctcatgagacaaataatacctcat
gtctacatgaaacaataacaaggtcatgaatatgcctaacatgatataac
tatccctcatacaattgcaaacacatttgtaagtttactatgggcaatgt
cacttgggaacattctcttagtgtctcaacttaaattccaattgatgtta
aagaaattggaagaaagacatatgtattcttaacaaaataagacagaaac
attcatattactttataatctttgtttctgtaactggttatgtggcctta
gctggtatttataactaccttcctctactacctattctgtattcccttca
cctgtggcaaagcacctcagtaggtcttggcttttttcctggaggattga
cccatacctaccttcattcctgatgggtctgtgtcctttgtcatcctgct
tggattaggctgttgttgactttaatcacaggacacagtagtgctaaaag
acaccccaaagtatctcctgccctccagacataatcttgcttacttccat
tgttgagggacaatccaatttccccatggtaatctggatctatcacccct
aacactgttattcctttcttaacctattggtttaagggcattaagaagcc
caaaatgaccagggggaggggaagtctgagcttccagtcaacggaatgtt
tgttgtggctcctggtaggacactccccgaatctggaaccaaacttctag
gccagcagacctagagttgtgggacaggagcaaatttctgga
gaattcaaaattaatgaatcaagccataggatcctcagaacaacacaaat
ttatgagaatataataaagaagcagtggaaaaattaaatggacattcttt
ttaaaaaaatgtatatgtatgtgtatgtttgtgtcttcgtgtatacacat
atgtgtggggtacccataaaggccagaagaaggtgtttaatctcctggaa
cttgagttaaaggcagttatagcaggctaatatgggtgctatgaatcagc
tcatgtcctctgcaaaggcagcaacttctaactgctgatccatttctcta
gcccctaaataggcattcttgatttggaaacaaaattataaaatctagac
tttgaaggagatttcagatcacagcagctgggtttatctacacaaaacct
gcacaaagtcaggccaatcaaaactccatcacaagttcaggaggggccac
tgtgatctcaaccctgccctgcctccattacgggagctattggcaggtga
tggctgcttaggcaggaagagccactctcctttggggattattaacccag
ggaagctgttagtaacaattttaaaaggaggacttggagctgagagggaa
acagcggcactgggaagactttgggggagtagtggtggatagatattata
tatatacatatatatatgtatatatacatatatacatctcaaagaataaa
atataaactatacttaaaaatcaaaccttatcaaggtgaggaggatacaa
tatctgcccccacatctgggagtaactgggatagtgagacccaggtaccc
gggaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_61439488_61440018
seq2: B6Ng01-153M19.b_77_717

seq1  CCAAGATCCAGATAAG-------GATCTCCAAGCCTCCAGATAAGGGTCA  43
      ||||||||||| | ||        |||||| |||||||||||||||||||
seq2  CCAAGATCCAGGTCAGAAACTTCTATCTCCCAGCCTCCAGATAAGGGTCA  50

seq1  CTGGTGAGCCTTCCAATTCCGAATTGTAGTTCATTCCAAATATTGTCAAG  93
      |||||||||||||||||||   |||||||||||||||| |||| ||||||
seq2  CTGGTGAGCCTTCCAATTCTAGATTGTAGTTCATTCCAGATATAGTCAAG  100

seq1  TTGACAACCAGGAATAGCCACTACAATCCACCCCTTGTCAA---CTTGAC  140
      |||||||||||||||||||||||||||||||||||||||||   | ||| 
seq2  TTGACAACCAGGAATAGCCACTACAATCCACCCCTTGTCAACCTCATGAG  150

seq1  ACAAATAATATCTCATGTTCACATGAAACAATAACAAGGTTGTAAATACG  190
      |||||||||| |||||||  ||||||||||||||||||||  | |||| |
seq2  ACAAATAATACCTCATGTCTACATGAAACAATAACAAGGTCATGAATATG  200

seq1  CCTAACATGATATAACTATCCCTCGTACAATCGCAAACGCATTAGTAAAT  240
      |||||||||||||||||||||||| |||||| |||||| |||| |||| |
seq2  CCTAACATGATATAACTATCCCTCATACAATTGCAAACACATTTGTAAGT  250

seq1  TTACAATGGG----------------------------------------  250
      |||| |||||                                        
seq2  TTACTATGGGCAATGTCACTTGGGAACATTCTCTTAGTGTCTCAACTTAA  300

seq1  --------------------------------------------------  250
                                                        
seq2  ATTCCAATTGATGTTAAAGAAATTGGAAGAAAGACATATGTATTCTTAAC  350

seq1  ---------------CATTCATATTACTTTATAATCCTCGTTTCTGCAAC  285
                     ||||||||||||||||||||| | ||||||| |||
seq2  AAAATAAGACAGAAACATTCATATTACTTTATAATCTTTGTTTCTGTAAC  400

seq1  TGGTTACGTGGCCTTAATTGGTATTTATAACTACCTTCCTCTACTACCCA  335
      |||||| |||||||||  |||||||||||||||||||||||||||||| |
seq2  TGGTTATGTGGCCTTAGCTGGTATTTATAACTACCTTCCTCTACTACCTA  450

seq1  TTCTGTATTTCCTTCACCTTCAGC-CAGCACCTCAGCAGGTCTTGGCTCT  384
      ||||||||| |||||||||   ||  |||||||||| ||||||||||| |
seq2  TTCTGTATTCCCTTCACCTGTGGCAAAGCACCTCAGTAGGTCTTGGCTTT  500

seq1  TTTCCTGGAGGATTGACCCA----TACCTTCATTCCTGATGGGTCTGCGT  430
      ||||||||||||||||||||    ||||||||||||||||||||||| ||
seq2  TTTCCTGGAGGATTGACCCATACCTACCTTCATTCCTGATGGGTCTGTGT  550

seq1  CCTTTGTCATCCTGCTTGGATTAGGCTGTTGTAGTTTCCCATTGACTTTA  480
      |||||||||||||||||||||||||||||||          |||||||||
seq2  CCTTTGTCATCCTGCTTGGATTAGGCTGTTG----------TTGACTTTA  590

seq1  ATCACAGGACATGGTAGTACTAAGAGACGCCCTAAGGGATCTCCTGCACT  530
      |||||||||||  ||||| |||| |||| ||| || | ||||||||| ||
seq2  ATCACAGGACACAGTAGTGCTAAAAGACACCCCAAAGTATCTCCTGCCCT  640

seq1  C  531
      |
seq2  C  641

seq1: chr9_14207170_14207976
seq2: B6Ng01-153M19.g_71_878

seq1  GAATTCAAAATTAATGAATCAAGCCATAGGATCCTCAGAACAACACAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATTAATGAATCAAGCCATAGGATCCTCAGAACAACACAAAT  50

seq1  TTATGAGAATATAATAAAGAAGCAGTGGAAAAATTAAATGGACATTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGAATATAATAAAGAAGCAGTGGAAAAATTAAATGGACATTCTTT  100

seq1  TTAAAAAAATGTATATGTATGTGTATGTTTGTGTCTTCGTGTATACACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAATGTATATGTATGTGTATGTTTGTGTCTTCGTGTATACACAT  150

seq1  ATGTGTGGGGTACCCATAAAGGCCAGAAGAAGGTGTTTAATCTCCTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGGGTACCCATAAAGGCCAGAAGAAGGTGTTTAATCTCCTGGAA  200

seq1  CTTGAGTTAAAGGCAGTTATAGCAGGCTAATATGGGTGCTATGAATCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTAAAGGCAGTTATAGCAGGCTAATATGGGTGCTATGAATCAGC  250

seq1  TCATGTCCTCTGCAAAGGCAGCAACTTCTAACTGCTGATCCATTTCTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCCTCTGCAAAGGCAGCAACTTCTAACTGCTGATCCATTTCTCTA  300

seq1  GCCCCTAAATAGGCATTCTTGATTTGGAAACAAAATTATAAAATCTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTAAATAGGCATTCTTGATTTGGAAACAAAATTATAAAATCTAGAC  350

seq1  TTTGAAGGAGATTTCAGATCACAGCAGCTGGGTTTATCTACACAAAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGGAGATTTCAGATCACAGCAGCTGGGTTTATCTACACAAAACCT  400

seq1  GCACAAAGTCAGGCCAATCAAAACTCCATCACAAGTTCAGGAGGGGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGTCAGGCCAATCAAAACTCCATCACAAGTTCAGGAGGGGCCAC  450

seq1  TGTGATCTCAACCCTGCCCTGCCTCCATTACGGGAGCTATTGGCAGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTCAACCCTGCCCTGCCTCCATTACGGGAGCTATTGGCAGGTGA  500

seq1  TGGCTGCTTAGGCAGGAAGAGCCACTCTCCTTTGGGGATTATTAACCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTTAGGCAGGAAGAGCCACTCTCCTTTGGGGATTATTAACCCAG  550

seq1  GGAAGCTGTTAGTAACAATTTTAAAAGGAGGACTTGGAGCTGAGAGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGTTAGTAACAATTTTAAAAGGAGGACTTGGAGCTGAGAGGGAA  600

seq1  ACAGCGGCACTGGGAAGACTTTGGGGGAGTAGTGGTGGATAGATATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGGCACTGGGAAGACTTTGGGGGAGTAGTGGTGGATAGATATTATA  650

seq1  TATATACATATATATATGTATATATACATATATACATTTCAAAGAATAAA  700
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TATATACATATATATATGTATATATACATATATACATCTCAAAGAATAAA  700

seq1  ATATTAATTATACTTAAAAATCAAACCTTATC-AGGTGAGGAGGATACAA  749
      |||| || |||||||||||||||||||||||| |||||||||||||||||
seq2  ATATAAACTATACTTAAAAATCAAACCTTATCAAGGTGAGGAGGATACAA  750

seq1  CATCTGCCCCAACACCT-GGAGTAACTGGGACAAGTGAGACCCAGGCACC  798
       ||||||||| ||| || |||||||||||||  ||||||||||||| |||
seq2  TATCTGCCCCCACATCTGGGAGTAACTGGGA-TAGTGAGACCCAGGTACC  799

seq1  CAGGAACTT  807
      | |||||||
seq2  CGGGAACTT  808