BAC Information

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BAC

Clone NameB6Ng01-155B15
Chromosome14 (Build37)X (Build37)
Map Location 100,301,779 - 100,303,02547,391,356 - 47,391,547
singlet/doubletsingletsinglet
Overlap geneKlf12
Upstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
Downstream geneLOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155B15.bB6Ng01-155B15.g
ACCDH949972DH949973
length1,207937
definitionDH949972|Mus musculus domesticus DNA, BAC clone: B6Ng01-155B15, 5' end.DH949973|Mus musculus domesticus DNA, BAC clone: B6Ng01-155B15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,301,779 - 100,303,025)(47,391,356 - 47,391,547)
sequence
gaattcctgtgaacaggaagacgttgtgtgccctgaaacggtgaaatcaa
ttcatttcttcaatatgtaaccgtacaaataaatatcgattttggctcaa
ggagccttataaaagaaagtcctttattgtgttgtatgatgtttggcatc
tttcaccaatcaagacaatgatagtatttgtttccattaagttgaaattt
aaggtctataacaagcacactgttttttacattattttattatttacatt
attttacattaacatatgaatactaacgtcaacccatataaacccagcca
cagatcttgcttgtggtcgaccttaaccagtttatcttgctaagaatttc
tgaaaccgaaccagctttcagtggtcttaaagggacctgtgataaatctg
ttagctgacaagcagaggctgggcgtggccaggacttgctttactgagtt
tagcactgaatcaaggcaaagaagtgtgacgtggacatccttcgtgttca
ggccttagtctctgctcttcctcattctaaaggataatatttttagatgt
tacccagaacagccatgtgaaggaatctgtacaacaaaaaatacccataa
aaggtatgtacccagggactggactgcagtgaagctggttctgaggagtg
gctttcttggtctgcactcccctgttttcaagagcacaggctctgtcagc
agatagagaggaagtcccattaaagctgaccctttggctgctacttactg
ggtttttctctgcagaaaggtagtgggacttcggtcaaagaggaccaagc
atgcagtaacctttacagagtgtggaaagaaggtagaccaacgcagtgct
atgcaggatggctgctgtccggaagccactgtgtgtaatccagtgagcag
gcactgtgggtggactacagcaggaaagggtttgggttgaaacaaatcca
tgaccaagttcagtaccatctggtcagtactggtacctagtagttacatc
ctgcagctaggagttgtagcattgaagaaatgtatcacagaggcatttct
gctcattcacatattatttagagttgagagtctcatgggactggtcgtgt
taggctttggatacagacctcacctcctcactccttgcctctttcaagct
ctaccttattggactaggattggatcaggtaattacatcagccgaaataa
ctacagt
gaattcacttcagtaaatatagtaaaatagtttaaaatgaaatataatcc
atatctcctctaaatggcgatctggttaccactataaataaggcaatcta
ttttcctcaaaatctcagattgacacaaatgaccgaatatgattctttgg
gggtaatttgccttctcctttattttcccagaatgaaatatttatagcca
aagttaatatagaaattattcaatattttaactgaatatttatagtattc
attactaaaaatataagagggcatcatcctgagtgaggtaacccaatcac
aaaggaactcacacaatatgtactaactgataagtggatattagtccaga
aacttaggatacccaagatataagatacaacttgctaaacacatgaaact
caagaagaacgaagaccaaagtgtggacactttgccccttcttagaattg
ggaacaaaacacccatggaaggagttacagagacaaagtttggagctgtg
acgaaaggatggaccatctagagactgccatatccggggatccatcccat
aatcagcttccaaatgctgacaccattgcacacactagcaagattttgct
gaaaggacccagatatagctgtctcttgtgagactatgctggggcctagc
aaacacataagtggatgctcacagtcagctattggatggatcacagggcc
cccaatggaggagctagagaaagtacccaaggagctaaagggatctgcaa
ccctataggtggaacaacattatgaactaaccagtaacccggagctcttg
actctagctgcatatgtatcaaaagatggcctagtcggccatcactggaa
agagaggcccattggacttgcaaactttatatgccccagtacaggggaat
gccagggccaaaagtgggagtgggtggggtaggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_100301779_100303025
seq2: B6Ng01-155B15.b_48_1254

seq1  GAATTCCTGTGAACAGGAAGACGTTGTGTGCCCTGAAACGGTGAAATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGAACAGGAAGACGTTGTGTGCCCTGAAACGGTGAAATCAA  50

seq1  TTCATTTCTTCAATATGTAACCGTACAAATAAATATCGATTTTGGCTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTTCAATATGTAACCGTACAAATAAATATCGATTTTGGCTCAA  100

seq1  GGAGCCTTATAAAAGAAAGTCCTTTATTGTGTTGTATGATGTTTGGCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTTATAAAAGAAAGTCCTTTATTGTGTTGTATGATGTTTGGCATC  150

seq1  TTTCACCAATCAAGACAATGATAGTATTTGTTTCCATTAAGTTGAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCAATCAAGACAATGATAGTATTTGTTTCCATTAAGTTGAAATTT  200

seq1  AAGGTCTATAACAAGCACACTGTTTTTTACATTATTTTATTATTTACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTATAACAAGCACACTGTTTTTTACATTATTTTATTATTTACATT  250

seq1  ATTTTACATTAACATATGAATACTAACGTCAACCCATATAAACCCAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACATTAACATATGAATACTAACGTCAACCCATATAAACCCAGCCA  300

seq1  CAGATCTTGCTTGTGGTCGACCTTAACCAGTTTATCTTGCTAAGAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTGCTTGTGGTCGACCTTAACCAGTTTATCTTGCTAAGAATTTC  350

seq1  TGAAACCGAACCAGCTTTCAGTGGTCTTAAAGGGACCTGTGATAAATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCGAACCAGCTTTCAGTGGTCTTAAAGGGACCTGTGATAAATCTG  400

seq1  TTAGCTGACAAGCAGAGGCTGGGCGTGGCCAGGACTTGCTTTACTGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGACAAGCAGAGGCTGGGCGTGGCCAGGACTTGCTTTACTGAGTT  450

seq1  TAGCACTGAATCAAGGCAAAGAAGTGTGACGTGGACATCCTTCGTGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTGAATCAAGGCAAAGAAGTGTGACGTGGACATCCTTCGTGTTCA  500

seq1  GGCCTTAGTCTCTGCTCTTCCTCATTCTAAAGGATAATATTTTTAGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAGTCTCTGCTCTTCCTCATTCTAAAGGATAATATTTTTAGATGT  550

seq1  TACCCAGAACAGCCATGTGAAGGAATCTGTACAACAAAAAATACCCATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGAACAGCCATGTGAAGGAATCTGTACAACAAAAAATACCCATAA  600

seq1  AAGGTATGTACCCAGGGACTGGACTGCAGTGAAGCTGGTTCTGAGGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATGTACCCAGGGACTGGACTGCAGTGAAGCTGGTTCTGAGGAGTG  650

seq1  GCTTTCTTGGTCTGCACTCCCCTGTTTTCAAGAGCACAGGCTCTGTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTGGTCTGCACTCCCCTGTTTTCAAGAGCACAGGCTCTGTCAGC  700

seq1  AGATAGAGAGGAAGTCCCATTAAAGCTGACCCTTTGGCTGCTACTTACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAGAGGAAGTCCCATTAAAGCTGACCCTTTGGCTGCTACTTACTG  750

seq1  GGTTTTTCTCTGCAGAAAGGTAGTGGGACTTCGGTCAAAGAGGACCAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCTCTGCAGAAAGGTAGTGGGACTTCGGTCAAAGAGGACCAAGC  800

seq1  ATGCAGTAACCTTTACAGAGTGTGGAAAGAAGGTAGACCAACGCAGTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTAACCTTTACAGAGTGTGGAAAGAAGGTAGACCAACGCAGTGCT  850

seq1  ATGCAGGATGGCTGCTGTCCGGAAGCCACTGTGTGTAATCCAGTGAGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGATGGCTGCTGTCCGGAAGCCACTGTGTGTAATCCAGTGAGCAG  900

seq1  GCACTGTGGGTGGACTACAGCAGGGAAAGGGTTT-GGTTGAAACAAATCC  949
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  GCACTGTGGGTGGACTACAGCA-GGAAAGGGTTTGGGTTGAAACAAATCC  949

seq1  ATGACCAAGTTCAGTACCATCTGGTCAAGGTACTGGTACCTAGTAAGTTT  999
      |||||||||||||||||||||||||||  ||||||||||||||||   ||
seq2  ATGACCAAGTTCAGTACCATCTGGTCA--GTACTGGTACCTAGTA--GTT  995

seq1  ACATCCTGCAGCCTAGGAGGTTGTAAGCATTGAAGAAATGTATCACAGGA  1049
      ||||||||||| |||||| ||||| |||||||||||||||||||||||  
seq2  ACATCCTGCAG-CTAGGA-GTTGT-AGCATTGAAGAAATGTATCACAG--  1040

seq1  AGGCATTTCTGCTCCATTTCACATATAATTTAGAGTTGAGAAGTCCTCAT  1099
      ||||||||||||||   ||||||||| ||||||||||||| ||| |||||
seq2  AGGCATTTCTGCTC--ATTCACATATTATTTAGAGTTGAG-AGT-CTCAT  1086

seq1  GGGACTGGTCCGTTGTTAAGCCTTTGGATAACAGACACTCA-CTCCTCAC  1148
      ||||||||||   |||| || |||||||| |||||| |||| ||||||||
seq2  GGGACTGGTC--GTGTT-AGGCTTTGGAT-ACAGAC-CTCACCTCCTCAC  1131

seq1  TCCTCTGCCTCCTTCCCCAAGCTTCATACTTTAAATGGGACTAGATATTG  1198
      |||| |||||| ||   ||||||   ||| ||  || |||||||  ||||
seq2  TCCT-TGCCTCTTT---CAAGCT--CTACCTT--ATTGGACTAG-GATTG  1172

seq1  GGGATTCAGGGTTAACTATTAACAAATACAAGCCGATAATAACTACAGT  1247
      |    |||||  ||| |        | |  |||||| ||||||||||||
seq2  G---ATCAGG--TAATT--------ACATCAGCCGA-AATAACTACAGT  1207

seq1: chrX_47391356_47391547
seq2: B6Ng01-155B15.g_760_1002 (reverse)

seq1  TCCCCTA-CCCACCCACTCCCACTTCATGGCCCTGGCGTTCCCCTGTACT  49
      ||||||| |||||||||||||||||  |||||||||| ||||||||||||
seq2  TCCCCTACCCCACCCACTCCCACTT-TTGGCCCTGGCATTCCCCTGTACT  49

seq1  GAGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAGTGATGGC  99
      | ||||||||||||||||||| |||| ||||||||||| |||||||||||
seq2  GGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGC  99

seq1  CGACTAGGCCATCTTCTGCTACATATGCAGCTAGAAACACGAGCTC----  145
      ||||||||||||||| || ||||||||||||||||  || ||||||    
seq2  CGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGG  149

seq1  --------------------------------TGGGGGTACAG-------  156
                                      | ||| | |||       
seq2  TTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTT  199

seq1  --------TGGGTGCTTTCGCTAGCTCCTCCATTGGGGGCCCTG  192
              ||||| ||||| ||||||||||||||||||||||||
seq2  TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTG  243