BAC Information

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BAC

Clone NameB6Ng01-155N05
Chromosome14 (Build37)
Map Location 122,676,519 - 122,809,124
singlet/doubletdoublet
Overlap geneClybl
Upstream geneFarp1, Stk24, Slc15a1, LOC100043577, Dock9, LOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, 1700108J01Rik
Downstream geneEG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4, Vgcnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155N05.bB6Ng01-155N05.g
ACCDH950499DH950500
length1,062997
definitionDH950499|Mus musculus domesticus DNA, BAC clone: B6Ng01-155N05, 5' end.DH950500|Mus musculus domesticus DNA, BAC clone: B6Ng01-155N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,808,053 - 122,809,124)(122,676,519 - 122,677,510)
sequence
gaattcctggtaactctgtcatagggtttagactgttactgtgtctcccc
accctgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatcca
tggaggtttgaggattactttgggctcttgcctctaacctttccaagccc
gtctttttctgatttccgcccctataccacatattatacactaagccacc
ttcaattttctgctccagtttcccagtttctctgttttgcacctcatgct
ctgccaaagaagttctaagattacagatgcctatcactgtatctgggctt
ttgtctggttttttgtttgtttgtttgttttcttgttttttctcagtatg
ttccagaaaccaaactccagtcagctgggttgcttagcaagtgtttttat
gggatgagcaaaccatctattcaccctcctcgtcagaaaaacccaggggc
tcccactgacctgtcccttctgtcctctggtgcttaggggatataaagct
ggatacccagagtattcctctgcagacaccacaaggagccctctgaaggc
agcagaacactccttgtctttgtgacactagctgtgtatctaaaggacaa
aggcaaattagttccttgtttaagaacaaaaaaaaaacaaacccaaaaac
caaacaaacaacctgggttaaactagctagacatcccttaagagaagaaa
gaaagaaagaaagaaagaaagagagagagagagagagagatagagagaga
gagagagagagagagagagaaagaaagaaagaagatagaagaaagaaaga
agagaaaagaaaaaaatccagcttgtctttactgcttccagcttgtcttc
acagctttccactcagcagaaagatagtatggactcacatattggtcctc
tcttgtatttctttctttaaacatttacttttcttcttcttattattggg
tgtgttgtcaaagacaacttgaagagttagttcctctccttccacacttt
agtctgaggacagctacggaggggaggttttattggctaacccatctacc
agtttcctttgc
gaattcagctgtgcctgatgacaaaagatcatttcagcttcagctggtgc
ttattcatcatgcgtatcccccggtggaggggtggggagagtcacctgag
tatctagtcctctatatcacattgatgtgcaaatctgccctaattgcaca
aggcctagggaggggctagagtataaggtccaggtctaatagagggaggg
ctccgtctgtgtggaaataggaaagcgatcatccctgcctgatacaaatt
ttccagcatgatcttttggtgggagcaccctcagacggtaagaagtgtcc
caaccatgttctataaagttgcccaatgagctcatagacctcggagtgaa
cttggtagaattgtatattgggttgtcattgggactgtagggggaaggct
agacattgcttacatattgttaacaacagactttatccactgaggcttct
cgttggtcttaatttcattgttttatctttgtgtgtgtgtttgaaggcca
gaggtaagtgttagatgtctttttcaattgcttgacattttatattttga
gacaaggtcacttattaaaagcctggtgctcagtgattctgcaaaatgaa
gggggagtacagggctcccactgccacacccagcttctttgtgtgggtaa
tgggcatgcaggctctgggtccttgggggtttccctaaacacttcactgc
tgagctagcaccccagcagctccttctgtcttttgcttaaaggttatcca
gggtttctgggatactttagacaggagggagtctgcatccactttaggct
accacaagatttatttaccatgcatggcagcttcttgcctttatcccaac
acttaggaggcagagtgggcagatttcttgagtttaagccaacctggtct
atatagtgagttctggacacccagggaaatgtagagaaaccctgtttcaa
acagacaaacaaacatgaaaattgtaatgtttgtactctgtatccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_122808053_122809124
seq2: B6Ng01-155N05.b_45_1106 (reverse)

seq1  GCAAAGGAAACTAGTTAGATGGGCTTAGCCCATAAAAACCCTCACCTCCG  50
      |||||||||||| | |||||||| |||||| ||||||  |||| ||||||
seq2  GCAAAGGAAACT-GGTAGATGGG-TTAGCCAATAAAA--CCTCCCCTCCG  46

seq1  TGCCTGGTCCCTCAGACTTAAGTGGTGGAAGGAGAGAACCTACTCCTGCA  100
      |  |||   ||||||||| |||| |||||||||||| | |||   || ||
seq2  TAGCTG--TCCTCAGACTAAAGT-GTGGAAGGAGAGGAACTAACTCTTCA  93

seq1  AGTTGTCCTCTGACAACACACACAATAAATAAGAGAGAAAGAAAGT-AAT  149
      |||||| || ||||||||||| |||| ||||||| ||||  ||||| |||
seq2  AGTTGT-CTTTGACAACACACCCAAT-AATAAGA-AGAAGAAAAGTAAAT  140

seq1  GTTTAAAGAAAGAAATACAAGAGGGGACCAATACTGTGAGT-CATACTAT  198
      ||||||||||||||||||||||| ||||||||| ||||||| ||||||||
seq2  GTTTAAAGAAAGAAATACAAGAGAGGACCAATA-TGTGAGTCCATACTAT  189

seq1  CTATCTGCTGAGTTGGAAGCTGTGAAGACAAGCTGGAAGCAGTAAAGACA  248
      || |||||||||| | ||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCTGAGTGGAAAGCTGTGAAGACAAGCTGGAAGCAGTAAAGACA  239

seq1  AGCTGGATTTTTTTTCTTTTCTCTTCTTTCTTTCTTCTTTCTTTCTTTCT  298
      ||||||| |||||||||||||||||||||||||||||| || ||||||||
seq2  AGCTGGA-TTTTTTTCTTTTCTCTTCTTTCTTTCTTCTATC-TTCTTTCT  287

seq1  TTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  348
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTCTCTCT  337

seq1  CTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTCTCTTAA-GGATGTCTAGC  397
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTCTCTTAAGGGATGTCTAGC  387

seq1  TGGTTTAACCCAGGTTGTTTGTTTGGTTTTTGGGTTTGTTTTTTTTTTGT  447
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAACCCAGGTTGTTTGTTTGGTTTTTGGGTTTGTTTTTTTTTTGT  437

seq1  TCTTAAACAAGGAACTAATTTGCCTTTGTCCTTTAGATACACAGCTAGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAACAAGGAACTAATTTGCCTTTGTCCTTTAGATACACAGCTAGTG  487

seq1  TCACAAAGACAAGGAGTGTTCTGCTGCCTTCAGAGGGCTCCTTGTGGTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGACAAGGAGTGTTCTGCTGCCTTCAGAGGGCTCCTTGTGGTGT  537

seq1  CTGCAGAGGAATACTCTGGGTATCCAGCTTTATATCCCCTAAGCACCAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGGAATACTCTGGGTATCCAGCTTTATATCCCCTAAGCACCAGA  587

seq1  GGACAGAAGGGACAGGTCAGTGGGAGCCCCTGGGTTTTTCTGACGAGGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAAGGGACAGGTCAGTGGGAGCCCCTGGGTTTTTCTGACGAGGAG  637

seq1  GGTGAATAGATGGTTTGCTCATCCCATAAAAACACTTGCTAAGCAACCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATAGATGGTTTGCTCATCCCATAAAAACACTTGCTAAGCAACCCA  687

seq1  GCTGACTGGAGTTTGGTTTCTGGAACATACTGAGAAAAAACAAGAAAACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGGAGTTTGGTTTCTGGAACATACTGAGAAAAAACAAGAAAACA  737

seq1  AACAAACAAACAAAAAACCAGACAAAAGCCCAGATACAGTGATAGGCATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAAAAACCAGACAAAAGCCCAGATACAGTGATAGGCATC  787

seq1  TGTAATCTTAGAACTTCTTTGGCAGAGCATGAGGTGCAAAACAGAGAAAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCTTAGAACTTCTTTGGCAGAGCATGAGGTGCAAAACAGAGAAAC  837

seq1  TGGGAAACTGGAGCAGAAAATTGAAGGTGGCTTAGTGTATAATATGTGGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAACTGGAGCAGAAAATTGAAGGTGGCTTAGTGTATAATATGTGGT  887

seq1  ATAGGGGCGGAAATCAGAAAAAGACGGGCTTGGAAAGGTTAGAGGCAAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGGCGGAAATCAGAAAAAGACGGGCTTGGAAAGGTTAGAGGCAAGA  937

seq1  GCCCAAAGTAATCCTCAAACCTCCATGGATGAACACACACACACACACAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAGTAATCCTCAAACCTCCATGGATGAACACACACACACACACAC  987

seq1  ACACACACACATACACACACAGGGTGGGGAGACACAGTAACAGTCTAAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACATACACACACAGGGTGGGGAGACACAGTAACAGTCTAAAC  1037

seq1  CCTATGACAGAGTTACCAGGAATTC  1072
      |||||||||||||||||||||||||
seq2  CCTATGACAGAGTTACCAGGAATTC  1062

seq1: chr14_122676519_122677510
seq2: B6Ng01-155N05.g_65_1061

seq1  GAATTCAGCTGTGCCTGATGACAAAAGATCATTTCAGCTTCAGCTGGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGTGCCTGATGACAAAAGATCATTTCAGCTTCAGCTGGTGC  50

seq1  TTATTCATCATGCGTATCCCCCGGTGGAGGGGTGGGGAGAGTCACCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATCATGCGTATCCCCCGGTGGAGGGGTGGGGAGAGTCACCTGAG  100

seq1  TATCTAGTCCTCTATATCACATTGATGTGCAAATCTGCCCTAATTGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGTCCTCTATATCACATTGATGTGCAAATCTGCCCTAATTGCACA  150

seq1  AGGCCTAGGGAGGGGCTAGAGTATAAGGTCCAGGTCTAATAGAGGGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTAGGGAGGGGCTAGAGTATAAGGTCCAGGTCTAATAGAGGGAGGG  200

seq1  CTCCGTCTGTGTGGAAATAGGAAAGCGATCATCCCTGCCTGATACAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTCTGTGTGGAAATAGGAAAGCGATCATCCCTGCCTGATACAAATT  250

seq1  TTCCAGCATGATCTTTTGGTGGGAGCACCCTCAGACGGTAAGAAGTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCATGATCTTTTGGTGGGAGCACCCTCAGACGGTAAGAAGTGTCC  300

seq1  CAACCATGTTCTATAAAGTTGCCCAATGAGCTCATAGACCTCGGAGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATGTTCTATAAAGTTGCCCAATGAGCTCATAGACCTCGGAGTGAA  350

seq1  CTTGGTAGAATTGTATATTGGGTTGTCATTGGGACTGTAGGGGGAAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAGAATTGTATATTGGGTTGTCATTGGGACTGTAGGGGGAAGGCT  400

seq1  AGACATTGCTTACATATTGTTAACAACAGACTTTATCCACTGAGGCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGCTTACATATTGTTAACAACAGACTTTATCCACTGAGGCTTCT  450

seq1  CGTTGGTCTTAATTTCATTGTTTTATCTTTGTGTGTGTGTTTGAAGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGTCTTAATTTCATTGTTTTATCTTTGTGTGTGTGTTTGAAGGCCA  500

seq1  GAGGTAAGTGTTAGATGTCTTTTTCAATTGCTTGACATTTTATATTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAAGTGTTAGATGTCTTTTTCAATTGCTTGACATTTTATATTTTGA  550

seq1  GACAAGGTCACTTATTAAAAGCCTGGTGCTCAGTGATTCTGCAAAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGTCACTTATTAAAAGCCTGGTGCTCAGTGATTCTGCAAAATGAA  600

seq1  GGGGGAGTACA-GGCTCCCACTGCCACACCCAGCTTCTTTGTGTGGGTAA  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGTACAGGGCTCCCACTGCCACACCCAGCTTCTTTGTGTGGGTAA  650

seq1  TGGGCATGCAGGCTCT-GGTCCTTGGGG--TTCCCTAAACACTTCACTGC  696
      |||||||||||||||| |||||||||||  ||||||||||||||||||||
seq2  TGGGCATGCAGGCTCTGGGTCCTTGGGGGTTTCCCTAAACACTTCACTGC  700

seq1  TGAGCTAGCACCCCAGCAGCTCCTTCTGTCTTTTGCTT-AAGGTTATCCA  745
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGAGCTAGCACCCCAGCAGCTCCTTCTGTCTTTTGCTTAAAGGTTATCCA  750

seq1  GGGTTTCT-GGATACTTTAGACAGGAGGGAGTCTGCATCCAC-TTAGGCT  793
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  GGGTTTCTGGGATACTTTAGACAGGAGGGAGTCTGCATCCACTTTAGGCT  800

seq1  ACCACAAGATTTATTTACCATGCATGGCAGC-TCTTGCCTTTAATCCCAA  842
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  ACCACAAGATTTATTTACCATGCATGGCAGCTTCTTGCCTTT-ATCCCAA  849

seq1  CACTTAGGAGGCAGAGGCGGGCAGATTTC-TGAGTTTTAGGCCAACCTGG  891
      ||||||||||||||| | ||||||||||| |||| |||| ||||||||||
seq2  CACTTAGGAGGCAGA-GTGGGCAGATTTCTTGAG-TTTAAGCCAACCTGG  897

seq1  TCTATATAGTGAGTTCTGGGACAGCCAGGGAGATGTAGAGAAACCCTGTT  941
      ||||||||||||||||| ||||| ||||||| ||||||||||||||||||
seq2  TCTATATAGTGAGTTCT-GGACACCCAGGGAAATGTAGAGAAACCCTGTT  946

seq1  TCAAACAGACAAACAAACATGAAAATTGTAATGTTTGTACTCTGTAGCCC  991
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCAAACAGACAAACAAACATGAAAATTGTAATGTTTGTACTCTGTATCCC  996

seq1  A  992
      |
seq2  A  997