BAC Information

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BAC

Clone NameB6Ng01-157A19
Chromosome14 (Build37)
Map Location 70,612,210 - 70,726,191
singlet/doubletdoublet
Overlap genePpp3cc, LOC100043115, Slc39a14
Upstream geneStc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3
Downstream geneEG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157A19.bB6Ng01-157A19.g
ACCDH951388DH951389
length1,0191,134
definitionDH951388|Mus musculus domesticus DNA, BAC clone: B6Ng01-157A19, 5' end.DH951389|Mus musculus domesticus DNA, BAC clone: B6Ng01-157A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,725,170 - 70,726,191)(70,612,210 - 70,613,357)
sequence
gaattcataatcctcctgcctcagtctcctgagtagttgggattacaagc
ctgggctttaagactcaacaaggaataatgcttttgggtttttttcctga
tgcccatactggcctatataactaagactagccttgaactcctaaccttc
ttggttgtataaagcttcctgagtgctgggattaaagcactaccaggcct
ttccatcggagtagtgtgtgcattcctgcttatttcctgatgctgaatgt
tactataaggagatgagagtagtgtaatgaactcccatgtaaaaagggtt
ttagtcaggcatggtggtgtgtgtatgtctgtacaccactcttgggaggc
tgaggcaagacaggaccatgaatttcaagcctgcctgagccacctcccaa
ggctatgccttcccccaccttaaagatttatttatgtttctgtgtgtttg
cctgtgtgaatttatgtacatcctatgtgtgtaagagcctgtggaggttg
gaagagggtgttggattttctggcattggagttgcagatgattgtgggta
ctggaaaccctgtttttcctccctcttacaatagttttctcaagcttcct
ttgttggtatgtctggtctaagttcctggcagaattcggttctctgacaa
ctataatctatcttctagtacctctgtggtgccgtttggttcctctcttc
ctcttttccttttgttgtacgctagctccactctgcacgtgtgtgtcatg
tattttttgtacacacgcctgtgtgtgcacgtgagtgaatctgcatgtgt
aggagtatgtatggaacccaggggcaatgttaggcatcttccttcaagtt
ccttgcctgactgtttgaggcagtgttccctctgtacctggacttaacta
gctggccagcagccccgggaatgatctctggcttcttcttttcagtgctg
acattacaagccctggttccatagctgtctctcacatgggctgctgggga
ctgagcttatctcccctca
gaattcttttctgcctgggtagggaaaactgagagcaaaaccccctgagt
tccactgttaccataacagctaggttaaacactggggttctagagtgcta
cctcagcaagtctttactggttaggaaatcattttcagcacaaacgttgg
gcagaggaatccaatgatcattaatgtgaagaaaacaatgtgaggcagga
ttttcctaaaccagtataagtaagtggccagtgagattggccagcatgcg
cttgtttctctagagtgtgaactttacagatatttatagatatgatacag
aaaatgcttgggagatcagctagaagatttacataaggcagagagaaggg
atttttacttccgcatttgtagactagagagttcttgcataattggctat
aaagcggggcacccagctgcatctcacatgacttgagtatttttcttata
ttacaccagctgtctcagactctgggtttgaaaaccacacggagaaaagg
aactaagggataatgccaaggctgaagaagtcttgaagcgactccatttt
cagaaatcctaccttcgctcttaatgatagcaaatgatttttctattgac
tgaaccaatagggggttctctgtcccctgtactgaaggtttttttgttgt
tgttgtttttagagacagggtttcactgtgtagccctgtctgtcctggaa
ctcactctatagaccaggctggcctcaaactaagaaatctgcctgcctct
gcctcccgagtgctgggattaaaggcgtgcgccaccatgcccgacaggaa
accattcttaagttatcaagggtagaaaaccaaatgtcactagtgagagg
aacttgttcactggctagcaagctactctggaggaagagatgatgcaatg
aaagacagtggtaggcagagcaatgctgacattcctggacagtctgacac
tcctgttcctaggcaggagccacatcatgagacagcatgtatacttttat
catcaatgtctagtgacaatgaggtgtcaccttgagatttcaggagagac
tgagctgttgcatatttcagactattgaggcagtccaccggccatgctat
catggatgcacataggaacgggttctaatcagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_70725170_70726191
seq2: B6Ng01-157A19.b_42_1060 (reverse)

seq1  TGAGGGGAGAT-AGCTCAGTCCCCAGC-GCCCATGTGAGAGACAGCTATG  48
      ||||||||||| ||||||||||||||| ||||||||||||||||||||| 
seq2  TGAGGGGAGATAAGCTCAGTCCCCAGCAGCCCATGTGAGAGACAGCTAT-  49

seq1  GGAGCCAGGGCTTGTAATGTCAGCACTGGAAAGAAGAGCCAAGAGGATTC  98
      ||| |||||||||||||||||||||||| ||||||||  | ||||   ||
seq2  GGAACCAGGGCTTGTAATGTCAGCACTGAAAAGAAGAAGCCAGAG--ATC  97

seq1  ATTCCCGGGGCTTGCTGGCCAGCTAGGTAAGGTCCAGGTACAGGGGGAAC  148
      ||||||||||| |||||||||||||| ||| |||||||||||| ||||||
seq2  ATTCCCGGGGC-TGCTGGCCAGCTAGTTAA-GTCCAGGTACAGAGGGAAC  145

seq1  ACTGCCTCAAACAGTCAGGCAAGGAACTTGAAGGAAGATGCCTAACATTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTGCCTCAAACAGTCAGGCAAGGAACTTGAAGGAAGATGCCTAACATT-  194

seq1  GCCCCTGGGTTCCATACATACTCCTACACATGCAGATTCACTCACGTGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGGGTTCCATACATACTCCTACACATGCAGATTCACTCACGTGCA  244

seq1  CACACAGGCGTGTGTAC-AAAAATACATGACACACACGTGCAGAGTGGAG  297
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACACAGGCGTGTGTACAAAAAATACATGACACACACGTGCAGAGTGGAG  294

seq1  CTAGCGTACAACAAAAGGAAAAGAGGAAGAGAGGAACCAAACGGCACCAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGTACAACAAAAGGAAAAGAGGAAGAGAGGAACCAAACGGCACCAC  344

seq1  AGAGGTACTAGAAGATAGATTATAGTTGTCAGAGAACCGAATTCTGCCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTACTAGAAGATAGATTATAGTTGTCAGAGAACCGAATTCTGCCAG  394

seq1  GAACTTAGACCAGACATACCAACAAAGGAAGCTTGAGAAAACTATTGTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAGACCAGACATACCAACAAAGGAAGCTTGAGAAAACTATTGTAA  444

seq1  GAGGGAGGAAAAACAGGGTTTCCAGTACCCACAATCATCTGCAACTCCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGAAAAACAGGGTTTCCAGTACCCACAATCATCTGCAACTCCAA  494

seq1  TGCCAGAAAATCCAACACCCTCTTCCAACCTCCACAGGCTCTTACACACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAAAATCCAACACCCTCTTCCAACCTCCACAGGCTCTTACACACA  544

seq1  TAGGATGTACATAAATTCACACAGGCAAACACACAGAAACATAAATAAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGTACATAAATTCACACAGGCAAACACACAGAAACATAAATAAAT  594

seq1  CTTTAAGGTGGGGGAAGGCATAGCCTTGGGAGGTGGCTCAGGCAGGCTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGGTGGGGGAAGGCATAGCCTTGGGAGGTGGCTCAGGCAGGCTTG  644

seq1  AAATTCATGGTCCTGTCTTGCCTCAGCCTCCCAAGAGTGGTGTACAGACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATGGTCCTGTCTTGCCTCAGCCTCCCAAGAGTGGTGTACAGACA  694

seq1  TACACACACCACCATGCCTGACTAAAACCCTTTTTACATGGGAGTTCATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACCACCATGCCTGACTAAAACCCTTTTTACATGGGAGTTCATT  744

seq1  ACACTACTCTCATCTCCTTATAGTAACATTCAGCATCAGGAAATAAGCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACTCTCATCTCCTTATAGTAACATTCAGCATCAGGAAATAAGCAG  794

seq1  GAATGCACACACTACTCCGATGGAAAGGCCTGGTAGTGCTTTAATCCCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACACACTACTCCGATGGAAAGGCCTGGTAGTGCTTTAATCCCAG  844

seq1  CACTCAGGAAGCTTTATACAACCAAGAAGGTTAGGAGTTCAAGGCTAGTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGAAGCTTTATACAACCAAGAAGGTTAGGAGTTCAAGGCTAGTC  894

seq1  TTAGTTATATAGGCCAGTATGGGCATCAGGAAAAAAACCCAAAAGCATTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTATATAGGCCAGTATGGGCATCAGGAAAAAAACCCAAAAGCATTA  944

seq1  TTCCTTGTTGAGTCTTAAAGCCCAGGCTTGTAATCCCAACTACTCAGGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTTGAGTCTTAAAGCCCAGGCTTGTAATCCCAACTACTCAGGAG  994

seq1  ACTGAGGCAGGAGGATTATGAATTC  1022
      |||||||||||||||||||||||||
seq2  ACTGAGGCAGGAGGATTATGAATTC  1019

seq1: chr14_70612210_70613357
seq2: B6Ng01-157A19.g_66_1199

seq1  GAATTCTTTTCTGCCTGGGTAGGGAAAACTGAGAGCAAAACCCCCTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTGCCTGGGTAGGGAAAACTGAGAGCAAAACCCCCTGAGT  50

seq1  TCCACTGTTACCATAACAGCTAGGTTAAACACTGGGGTTCTAGAGTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTTACCATAACAGCTAGGTTAAACACTGGGGTTCTAGAGTGCTA  100

seq1  CCTCAGCAAGTCTTTACTGGTTAGGAAATCATTTTCAGCACAAACGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCAAGTCTTTACTGGTTAGGAAATCATTTTCAGCACAAACGTTGG  150

seq1  GCAGAGGAATCCAATGATCATTAATGTGAAGAAAACAATGTGAGGCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAATCCAATGATCATTAATGTGAAGAAAACAATGTGAGGCAGGA  200

seq1  TTTTCCTAAACCAGTATAAGTAAGTGGCCAGTGAGATTGGCCAGCATGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAAACCAGTATAAGTAAGTGGCCAGTGAGATTGGCCAGCATGCG  250

seq1  CTTGTTTCTCTAGAGTGTGAACTTTACAGATATTTATAGATATGATACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTCTCTAGAGTGTGAACTTTACAGATATTTATAGATATGATACAG  300

seq1  AAAATGCTTGGGAGATCAGCTAGAAGATTTACATAAGGCAGAGAGAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTTGGGAGATCAGCTAGAAGATTTACATAAGGCAGAGAGAAGGG  350

seq1  ATTTTTACTTCCGCATTTGTAGACTAGAGAGTTCTTGCATAATTGGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACTTCCGCATTTGTAGACTAGAGAGTTCTTGCATAATTGGCTAT  400

seq1  AAAGCGGGGCACCCAGCTGCATCTCACATGACTTGAGTATTTTTCTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGGGGCACCCAGCTGCATCTCACATGACTTGAGTATTTTTCTTATA  450

seq1  TTACACCAGCTGTCTCAGACTCTGGGTTTGAAAACCACACGGAGAAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCAGCTGTCTCAGACTCTGGGTTTGAAAACCACACGGAGAAAAGG  500

seq1  AACTAAGGGATAATGCCAAGGCTGAAGAAGTCTTGAAGCGACTCCATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGGGATAATGCCAAGGCTGAAGAAGTCTTGAAGCGACTCCATTTT  550

seq1  CAGAAATCCTACCTTCGCTCTTAATGATAGCAAATGATTTTTCTATTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCTACCTTCGCTCTTAATGATAGCAAATGATTTTTCTATTGAC  600

seq1  TGAACCAATAGGGGGTTCTCTGTCCCCTGTACTGAAGGTTTTTTTGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAATAGGGGGTTCTCTGTCCCCTGTACTGAAGGTTTTTTTGTTGT  650

seq1  TGTTGTTTTTAGAGACAGGGTTTCACTGTGTAGCCCTGTCTGTCCTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTTTAGAGACAGGGTTTCACTGTGTAGCCCTGTCTGTCCTGGAA  700

seq1  CTCACTCTATAGACCAGGCTGGCCTCAAACTAAGAAATCTGCCTGCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTATAGACCAGGCTGGCCTCAAACTAAGAAATCTGCCTGCCTCT  750

seq1  GCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCGACAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCGACAGGAA  800

seq1  ACCATTCTTAAGTTATC-AGGGTAGAAAACCAAATGTTCACTAGTGAGAG  849
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  ACCATTCTTAAGTTATCAAGGGTAGAAAACCAAATG-TCACTAGTGAGAG  849

seq1  GAACTTGTTCACTGGCTAGCAAGCTACTCTGGAGGAAGAGATGATGCAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTTCACTGGCTAGCAAGCTACTCTGGAGGAAGAGATGATGCAAT  899

seq1  GAAAGACAGTGGTAGGCAGGAGCAATGCTGACATTCCTGGACAGTCTGAC  949
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAAAGACAGTGGTAGGCA-GAGCAATGCTGACATTCCTGGACAGTCTGAC  948

seq1  ACCCCTGTTCCTAGGCAAGGAGCCACATCATGAGACAAGCCATGTATACT  999
      || ||||||||||||| ||||||||||||||||||||   ||||||||||
seq2  ACTCCTGTTCCTAGGC-AGGAGCCACATCATGAGACA--GCATGTATACT  995

seq1  TTTATCATCAATGTCTAGTGACAAATGAGGTGTCACCTTGAGATTTCAGA  1049
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  TTTATCATCAATGTCTAGTGAC-AATGAGGTGTCACCTTGAGATTTCAGG  1044

seq1  GAAAACTGAAGCTGTTTGCATAATTTCAGACTA-TGAAGCAGCCCACCCG  1098
        | |||| ||||| |||||| ||||||||||| ||| |||| |||||  
seq2  AGAGACTG-AGCTG-TTGCAT-ATTTCAGACTATTGAGGCAGTCCACC--  1089

seq1  TGCACATGCATACCATGGATGCACACATAGGAGTCTGATTCTAATCAGAT  1148
       |  ||||| || ||||||||  |||||||||  | | ||||||||||||
seq2  -GGCCATGC-TATCATGGATG--CACATAGGA-ACGGGTTCTAATCAGAT  1134