BAC Information

Click to search

BAC

Clone NameB6Ng01-157F20
Chromosome14 (Build37)
Map Location 24,697,924 - 24,846,320
singlet/doubletdoublet
Overlap geneKcnma1
Upstream gene1700112E06Rik
Downstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157F20.bB6Ng01-157F20.g
ACCDH951619DH951620
length1,106893
definitionDH951619|Mus musculus domesticus DNA, BAC clone: B6Ng01-157F20, 5' end.DH951620|Mus musculus domesticus DNA, BAC clone: B6Ng01-157F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,697,924 - 24,699,046)(24,845,439 - 24,846,320)
sequence
gaattcccccagggaatttaagaatgaggaaactgggccattctatatgg
agcttccttgcaggctggtctctatgcaagaccaggtagcaaggccacta
aagtcacaaattcagagaaggattgcctgggttaaaacccagttctccac
ctcaggtaagtttctcacagccaatttgtcctttgtctttttctgggctc
ccacacagagtggatacacaaaccctgacaaaacctctttgccagcacct
ggcacacagcagtaaaggtgaggcaccggtgtgttttgagaacgactaat
tggtcacctacaatgtagcaggcaagatactgaagcatcccacatgcatt
atcttatttgatgctcgaaagtccttgtagaaatttacagagcaatcaag
cttagagaagcaaaatcgttcacctaaggtcaatgctagacagtggaaac
ttgaaccaaacagttgggacacaagtctgagtttattaacccaaattctc
tgctgcttgtctttgcaaactcatcagctcttcagattccccgctgctcc
tggcactgagctgggtcctttaaacatacttaacaactgtttctggcaag
gctggctgactacagagactgactgtgggctaaagacctccagccccttc
caggaaacccttggcccatcatctctctctacacttctcaaaagaagcag
gtctcattcttaaaatacagaagcaatgtggcaggacacttagaaaggca
tcactgccattcagtatgacaacaaagtaccacagagatccaaggcccaa
aggtcagaaatccggttccagccagccaaggcagcaccatagtatgaagg
agcagcccagcctgataggcatgggacgtgagctggaggcagcacgaagg
gggaggaaagtccaactgagccatgcatgtgagtgagttacatgtgtagt
tcaatttaggcactgggcagatttgtaaagctcacactctcctacagtgc
tacaaaagcaaagtttaacacataccaatcatcaacataggtgtgctgga
ggggagtgtgcccaaccagagcgaagtcagagctgaggaagagagtcatg
cctgac
gaattcagcatgaaatggttcagatacattcttgagtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtatgtgcactcgcgcgtgcatgcagcattt
tcctgtgtttgatgatctcagagccaggccctcaaaactgcaactagagt
tgggtaattacataatcccagaggtggttccacagtccaataaaaatttg
gtcataaaaataattagattgcaggctatttaaaaatgtggtcccaaggg
cacagccacagactattctctgcctgccttcagagggaggattcaaagtt
gagaacaagctgagaagaaaaaaacagtattgaattagggatagagatag
cagaatccatgtctgggatgtaagcctattactggcggggtttactgaat
cttctttaaagattcagtggggctgtgaactgcactgggcgcacggttcc
ctagtggagcccttgttgggcttgtctctcacaagagtttacacgtgtga
gcagagatcaggtacctggcatgctaatggttcctcaagaggaaagcttt
gggatgtcttctggaagcagaagggccagtttgtttcaggacaaatgcct
ctgtcgtgctgtcttcacctcagccaacttcccacagctggactggcata
ggtgtagctttaaagggtagaagaaaagggatgtgcttttttttttgggg
gggggggtgccccaaattcagcagctgaagtaacctgaaatgtcattttt
ccctgggagcaggactctcccttccccccaagatgaaggatgaaaaaatc
actggttagccaggcgggtctaatcaatctcctgtaagtgagaaaacttc
ctgatgaaatttttccggtggcaagttggcttttccctcttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_24697924_24699046
seq2: B6Ng01-157F20.b_45_1150

seq1  GAATTCCCCCAGGGAATTTAAGAATGAGGAAACTGGGCCATTCTATATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCAGGGAATTTAAGAATGAGGAAACTGGGCCATTCTATATGG  50

seq1  AGCTTCCTTGCAGGCTGGTCTCTATGCAAGACCAGGTAGCAAGGCCACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTTGCAGGCTGGTCTCTATGCAAGACCAGGTAGCAAGGCCACTA  100

seq1  AAGTCACAAATTCAGAGAAGGATTGCCTGGGTTAAAACCCAGTTCTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACAAATTCAGAGAAGGATTGCCTGGGTTAAAACCCAGTTCTCCAC  150

seq1  CTCAGGTAAGTTTCTCACAGCCAATTTGTCCTTTGTCTTTTTCTGGGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTAAGTTTCTCACAGCCAATTTGTCCTTTGTCTTTTTCTGGGCTC  200

seq1  CCACACAGAGTGGATACACAAACCCTGACAAAACCTCTTTGCCAGCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGAGTGGATACACAAACCCTGACAAAACCTCTTTGCCAGCACCT  250

seq1  GGCACACAGCAGTAAAGGTGAGGCACCGGTGTGTTTTGAGAACGACTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACAGCAGTAAAGGTGAGGCACCGGTGTGTTTTGAGAACGACTAAT  300

seq1  TGGTCACCTACAATGTAGCAGGCAAGATACTGAAGCATCCCACATGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACCTACAATGTAGCAGGCAAGATACTGAAGCATCCCACATGCATT  350

seq1  ATCTTATTTGATGCTCGAAAGTCCTTGTAGAAATTTACAGAGCAATCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATTTGATGCTCGAAAGTCCTTGTAGAAATTTACAGAGCAATCAAG  400

seq1  CTTAGAGAAGCAAAATCGTTCACCTAAGGTCAATGCTAGACAGTGGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGAAGCAAAATCGTTCACCTAAGGTCAATGCTAGACAGTGGAAAC  450

seq1  TTGAACCAAACAGTTGGGACACAAGTCTGAGTTTATTAACCCAAATTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCAAACAGTTGGGACACAAGTCTGAGTTTATTAACCCAAATTCTC  500

seq1  TGCTGCTTGTCTTTGCAAACTCATCAGCTCTTCAGATTCCCCGCTGCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTGTCTTTGCAAACTCATCAGCTCTTCAGATTCCCCGCTGCTCC  550

seq1  TGGCACTGAGCTGGGTCCTTTAAACATACTTAACAACTGTTTCTGGCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGAGCTGGGTCCTTTAAACATACTTAACAACTGTTTCTGGCAAG  600

seq1  GCTGGCTGACTACAGAGACTGACTGTGGGCTAAAGACCTCCAGCCCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGACTACAGAGACTGACTGTGGGCTAAAGACCTCCAGCCCCTTC  650

seq1  CAGGAAACCCTTGGCCCATCATCTCTCTCTACACTTCTCAAAAGAAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAACCCTTGGCCCATCATCTCTCTCTACACTTCTCAAAAGAAGCAG  700

seq1  GTCTCATTCTTAAAATACAGAAGCAATGTGGCAGGACACTTAGAAAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATTCTTAAAATACAGAAGCAATGTGGCAGGACACTTAGAAAGGCA  750

seq1  TCACTGCCATTCAGTATGACAACAAAGTACCACAGAGATCCAAGGCCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCCATTCAGTATGACAACAAAGTACCACAGAGATCCAAGGCCCAA  800

seq1  AGGTCAGAAATCCGGTTCCAGCCAGCCAAGGCAGCACCATAGTATGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGAAATCCGGTTCCAGCCAGCCAAGGCAGCACCATAGTATGAAGG  850

seq1  AGCAGCCCAGCCTGATAGGCATGGGACGTGAGCTGGAGGCAGCACGAAGG  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGCAGCCCAGCCTGATAGGCATGGGACGTGAGCTGGAGGCAGCACGAA-G  899

seq1  GGGGAGGAAAGTCCAACTGAGCCATGCATGTGAGTGAGTTACATGTGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAAAGTCCAACTGAGCCATGCATGTGAGTGAGTTACATGTGTAG  949

seq1  TTCAATTTTAGGCACTGGGCAGATTTGTAAAGCTCAACACCCTCCTACAG  1000
      ||||| ||||||||||||||||||||||||||||| |||| |||||||||
seq2  TTCAA-TTTAGGCACTGGGCAGATTTGTAAAGCTC-ACACTCTCCTACAG  997

seq1  TTGCCTACAAAAAGCCAAAAGTTTAACACCATACCAATCAATCAACATAG  1050
      |   |||| ||||||  ||||||||||| |||||||||| ||||||||||
seq2  T--GCTAC-AAAAGC--AAAGTTTAACA-CATACCAATC-ATCAACATAG  1040

seq1  GTGTGCTGGAAGGGGAGTGTGCCCAACCCAGAGCAGAGAGGCCAAGAGCT  1100
      ||||||||| |||||||||||||||| |||||||   || | | ||||||
seq2  GTGTGCTGG-AGGGGAGTGTGCCCAA-CCAGAGC---GAAGTC-AGAGCT  1084

seq1  GAGGGAAGAGAGTCATGCCTGAC  1123
      || ||||||||||||||||||||
seq2  GA-GGAAGAGAGTCATGCCTGAC  1106

seq1: chr14_24845439_24846320
seq2: B6Ng01-157F20.g_67_959 (reverse)

seq1  CCAAGA-GGAAAAGCCAACTTGCCCCCGAAAAAATCTCATCAGGAAG-TT  48
      |||||| ||||||||||||||||| ||| |||||| ||||||||||| ||
seq2  CCAAGAGGGAAAAGCCAACTTGCCACCGGAAAAATTTCATCAGGAAGTTT  50

seq1  TCTTCCTTACAGGAGACTTGATTTAGA-CCGCCTGGCTAGACAGTGATTT  97
      |||  ||||||||||| |||| ||||| |||||||||||  |||||||||
seq2  TCTCACTTACAGGAGA-TTGA-TTAGACCCGCCTGGCTAACCAGTGATTT  98

seq1  TTTCATCC-TCATCTTGGGGGG-AGGGAGAGTCCTGCT-CCAGGGAAAGA  144
      |||||||| ||||||||||||| ||||||||||||||| ||||||||| |
seq2  TTTCATCCTTCATCTTGGGGGGAAGGGAGAGTCCTGCTCCCAGGGAAAAA  148

seq1  TGACATTTCAGGATACTTCAGCTGCTGACTTTGGG---CCCCCCCCCCC-  190
      |||||||||||| ||||||||||||||| ||||||   ||||||||||| 
seq2  TGACATTTCAGGTTACTTCAGCTGCTGAATTTGGGGCACCCCCCCCCCCA  198

seq1  -AAAAAAAAGCACAT-CCTTTTCTTCTACCC-TTAAAGCTACACCTATGC  237
       |||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  AAAAAAAAAGCACATCCCTTTTCTTCTACCCTTTAAAGCTACACCTATGC  248

seq1  CAGTCCAGCTGTGGGAAGTTGGCTGAGGTGAAGACAGCACGACAGAGGCA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAGCTGTGGGAAGTTGGCTGAGGTGAAGACAGCACGACAGAGGCA  298

seq1  TTTGTCCTGAAACAAACTGGCCCTTCTGCTTCCAGAAGACATCCCAAAGC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTGAAACAAACTGGCCCTTCTGCTTCCAGAAGACATCCCAAAGC  348

seq1  TTTCCTCTTGAGGAACCATTAGCATGCCAGGTACCTGATCTCTGCTCACA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTGAGGAACCATTAGCATGCCAGGTACCTGATCTCTGCTCACA  398

seq1  CGTGTAAACTCTTGTGAGAGACAAGCCCAACAAGGGCTCCACTAGGGAAC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTAAACTCTTGTGAGAGACAAGCCCAACAAGGGCTCCACTAGGGAAC  448

seq1  CGTGCGCCCAGTGCAGTTCACAGCCCCACTGAATCTTTAAAGAAGATTCA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCGCCCAGTGCAGTTCACAGCCCCACTGAATCTTTAAAGAAGATTCA  498

seq1  GTAAACCCCGCCAGTAATAGGCTTACATCCCAGACATGGATTCTGCTATC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCCCGCCAGTAATAGGCTTACATCCCAGACATGGATTCTGCTATC  548

seq1  TCTATCCCTAATTCAATACTGTTTTTTTCTTCTCAGCTTGTTCTCAACTT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCCTAATTCAATACTGTTTTTTTCTTCTCAGCTTGTTCTCAACTT  598

seq1  TGAATCCTCCCTCTGAAGGCAGGCAGAGAATAGTCTGTGGCTGTGCCCTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTCCCTCTGAAGGCAGGCAGAGAATAGTCTGTGGCTGTGCCCTT  648

seq1  GGGACCACATTTTTAAATAGCCTGCAATCTAATTATTTTTATGACCAAAT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCACATTTTTAAATAGCCTGCAATCTAATTATTTTTATGACCAAAT  698

seq1  TTTTATTGGACTGTGGAACCACCTCTGGGATTATGTAATTACCCAACTCT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGGACTGTGGAACCACCTCTGGGATTATGTAATTACCCAACTCT  748

seq1  AGTTGCAGTTTTGAGGGCCTGGCTCTGAGATCATCAAACACAGGAAAATG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAGTTTTGAGGGCCTGGCTCTGAGATCATCAAACACAGGAAAATG  798

seq1  CTGCATGCACGCGCGAGTGCACATACACACACACACACACACACACACAC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGCACGCGCGAGTGCACATACACACACACACACACACACACACAC  848

seq1  ACACACACACTCAAGAATGTATCTGAACCATTTCATGCTGAATTC  882
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACTCAAGAATGTATCTGAACCATTTCATGCTGAATTC  893