BAC Information

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BAC

Clone NameB6Ng01-159L03
Chromosome14 (Build37)
Map Location 100,941,237 - 101,067,019
singlet/doubletdoublet
Overlap geneEG668684
Upstream geneLOC668672, EG546623, Klf12, LOC100043413, EG668683
Downstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159L03.bB6Ng01-159L03.g
ACCDH953283DH953284
length1,1871,099
definitionDH953283|Mus musculus domesticus DNA, BAC clone: B6Ng01-159L03, 5' end.DH953284|Mus musculus domesticus DNA, BAC clone: B6Ng01-159L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,065,803 - 101,067,019)(100,941,237 - 100,942,334)
sequence
gaattcagcaaatgcttcaaatacatcctcgagcactcttgctcaacctc
cattctcagcttaatctaagctacttttcagtccccttattcctccatca
ctcctaacctctcaatgtctgagcctagctagggtcaattttcaattttt
tagatcatatatgctgaaagcttttactaaccaaatgttacacagtgcag
tttatgaaagacaaaaccagagctccccaaataatgcaataggggtactt
agacgtgcccccagccacagaaataggaatggacacacccataacacagg
ttaaatgcaactatagagtatcaaggtctaaaccaaaatcagctatgcct
gcctccagggatgcagtgactagaatttcaggtgaaatttaaatgataag
attaccatacttctgggcatgatgttgttttctatagcttgagagcacat
gtgggtttaagtaagaaagctgtgtcttcctggtagggcgcagcattatt
tacagtctctgaaaacagtgaggattttctccctttcgtgttggtttact
tgaaattgtgaagcccttcagcctgaacacgacccaggctttcactgcta
tacaagtcgatttgacttcagtttcatgcttttttgaccactgcctagtc
caggaatccctaaaattgctttgaatcacaagaggtcaaatccagaaaga
ctagtcacaatatcaataaaaaggaaagcaattttgggttagtagacctg
tcaagaaagctagcatgacaggctgcatgtcacttgccatagccacaaga
aggtaagcttgctccatctcgctgcctgtcccctgcactggctgtgcctg
tcactaatggaagacatttgtctttgccttcactgtggcattgccataca
ctttcaccaccagagccatttccaccaccaagacaggtgcatcacacact
gcaggagactcatttgattgacactaaacaggttggccttgtttatggct
tgttatgtatactagctgcttctcaaaccctttcctgggtactaactaac
aatctctaaaatccgaatattcattactttagaaatcaggactcatgcta
acagagcatgtaggcaaggtggggtggctgtggccattctctaatacatt
gcacatagatggttagcctgtaatctctgtacctgga
gaattcttgaactttccattggtagaccatcagtcatttttggaccagtt
ggatctcagcctgtaagctactctaataattttcccattccatttatata
tagattcatgcaataagttttgctaccttagagaatccagactattacaa
tgtgttcctggggtttctgaagttagagctagggtagggctcagttagag
ctatgcctaccttttgagcaaagaagccaacattctctagagtttaagca
tatttatattgcagattttctgaagtctgtggaaagctctcaggcttcca
tggatgagttgacggttgttacctaggtcatgtgcatgggagtccatata
gtcctcacatgccgagggtgaagtcttggcttagactgggattgagattt
ttctaagtaggacggttataagtatgataattgaaggccctatatgtttt
aaatatatccttaggcttagtccttagagatatatcaactttgtaattct
agaagcatcagtagcagtccaacatgagatttacaaaattagatttctac
aacaatactgttgtaatgtatatgatgatctgtgctcagttaaataactg
taatgttcattagctttttctctgtgaagggcaggtactgaaagaaggag
ttgggttttgaagaaaatagaatacatttttgatcaacatcaggaaccag
cacgcaccaaatcttgccgactgcctgttctttcaaaggaaattttgttg
gtagatgaccacactcatttctttatgtccctgcttgtgattgtttgcat
tatatattgggcggactgtggcagatcctataattgtcccattttttccc
tttacactattagactgttacacaatatttggattagtcattgaaaattg
atggaatgatactgtattgtgttgctggataagtagatatccaaaactta
acggctaaaataatactccaggtttcagaacttgcacagtctaaataatt
tttaaagcatattcttttcaaaggtatatagtcatccatcaaatcaacct
cggtgtcctcattccatgatggtgtgtgttgttgtatgtgtgtttgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_101065803_101067019
seq2: B6Ng01-159L03.b_50_1236 (reverse)

seq1  TCCAGGTACAGGAGGATCCAGGGGCTAACAAACTTATCTGCATAGTATTT  50
      |||||||||| |||  | ||  ||||||| | | ||| ||||  ||||| 
seq2  TCCAGGTACA-GAGATTACA--GGCTAACCATC-TATGTGCAATGTATTA  46

seq1  AGGAATGAGCCACAGCCACCCACCCTCTGCCTTACATGCTCTGTTAGCAT  100
        ||||| |||||||||||||  ||| |||| ||||||||||||||||||
seq2  GAGAATG-GCCACAGCCACCCCACCT-TGCC-TACATGCTCTGTTAGCAT  93

seq1  GGAGGTCCCCTGGATTTCTTAGAGTAAATGATATTTCGGATTTTTTAGAG  150
      |   ||||    |||||| || ||| |||||   ||||||  ||||||||
seq2  G--AGTCC---TGATTTC-TAAAGT-AATGAATATTCGGA--TTTTAGAG  134

seq1  ATTGTGTAGTTTAGTACCCAGGAAAGGGTTTGAGGAAGCAGCTATGTATT  200
      ||||| ||| ||||||||||||||||||||||| |||||||||| |||| 
seq2  ATTGT-TAG-TTAGTACCCAGGAAAGGGTTTGA-GAAGCAGCTA-GTAT-  179

seq1  AACCATAAACAAGCCCATAAACAAGGCCAACCTGTTTAGGTGTCAATCAA  250
         ||| |||||| |||||||||||||||||||||||| |||||||||||
seq2  --ACAT-AACAAG-CCATAAACAAGGCCAACCTGTTTA-GTGTCAATCAA  224

seq1  ATGAGTTCTCCTTGGCAGTGTTGTGATGCACCTGTCTTGGTGGTGGAAAT  300
      ||||| ||||||  |||||| |||||||||||||||||||||||||||||
seq2  ATGAG-TCTCCT--GCAGTG-TGTGATGCACCTGTCTTGGTGGTGGAAAT  270

seq1  GGCTCTGGTGGTGAAAGTGTATGGCAATGCCACAGTGAAGGCAAAGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGGTGGTGAAAGTGTATGGCAATGCCACAGTGAAGGCAAAGACAA  320

seq1  ATGTCTTCCATTAGTGACAGGCACAGCCAGTGCAGGGGACAGGCAGCGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCCATTAGTGACAGGCACAGCCAGTGCAGGGGACAGGCAGCGAG  370

seq1  ATGGAGCAAGCTTACCTTCTTGTGGCTATGGCAAGTGACATGCAGCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCAAGCTTACCTTCTTGTGGCTATGGCAAGTGACATGCAGCCTGT  420

seq1  CATGCTAGCTTTCTTGACAGGTCTACTAACCCAAAATTGCTTTCCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAGCTTTCTTGACAGGTCTACTAACCCAAAATTGCTTTCCTTTTT  470

seq1  ATTGATATTGTGACTAGTCTTTCTGGATTTGACCTCTTGTGATTCAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATTGTGACTAGTCTTTCTGGATTTGACCTCTTGTGATTCAAAGC  520

seq1  AATTTTAGGGATTCCTGGACTAGGCAGTGGTCAAAAAAGCATGAAACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGGGATTCCTGGACTAGGCAGTGGTCAAAAAAGCATGAAACTGA  570

seq1  AGTCAAATCGACTTGTATAGCAGTGAAAGCCTGGGTCGTGTTCAGGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAATCGACTTGTATAGCAGTGAAAGCCTGGGTCGTGTTCAGGCTGA  620

seq1  AGGGCTTCACAATTTCAAGTAAACCAACACGAAAGGGAGAAAATCCTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTCACAATTTCAAGTAAACCAACACGAAAGGGAGAAAATCCTCAC  670

seq1  TGTTTTCAGAGACTGTAAATAATGCTGCGCCCTACCAGGAAGACACAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGAGACTGTAAATAATGCTGCGCCCTACCAGGAAGACACAGCT  720

seq1  TTCTTACTTAAACCCACATGTGCTCTCAAGCTATAGAAAACAACATCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACTTAAACCCACATGTGCTCTCAAGCTATAGAAAACAACATCATG  770

seq1  CCCAGAAGTATGGTAATCTTATCATTTAAATTTCACCTGAAATTCTAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGTATGGTAATCTTATCATTTAAATTTCACCTGAAATTCTAGTC  820

seq1  ACTGCATCCCTGGAGGCAGGCATAGCTGATTTTGGTTTAGACCTTGATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATCCCTGGAGGCAGGCATAGCTGATTTTGGTTTAGACCTTGATAC  870

seq1  TCTATAGTTGCATTTAACCTGTGTTATGGGTGTGTCCATTCCTATTTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGTTGCATTTAACCTGTGTTATGGGTGTGTCCATTCCTATTTCTG  920

seq1  TGGCTGGGGGCACGTCTAAGTACCCCTATTGCATTATTTGGGGAGCTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGGGCACGTCTAAGTACCCCTATTGCATTATTTGGGGAGCTCTG  970

seq1  GTTTTGTCTTTCATAAACTGCACTGTGTAACATTTGGTTAGTAAAAGCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCTTTCATAAACTGCACTGTGTAACATTTGGTTAGTAAAAGCTT  1020

seq1  TCAGCATATATGATCTAAAAAATTGAAAATTGACCCTAGCTAGGCTCAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATATATGATCTAAAAAATTGAAAATTGACCCTAGCTAGGCTCAGA  1070

seq1  CATTGAGAGGTTAGGAGTGATGGAGGAATAAGGGGACTGAAAAGTAGCTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGAGGTTAGGAGTGATGGAGGAATAAGGGGACTGAAAAGTAGCTT  1120

seq1  AGATTAAGCTGAGAATGGAGGTTGAGCAAGAGTGCTCGAGGATGTATTTG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGCTGAGAATGGAGGTTGAGCAAGAGTGCTCGAGGATGTATTTG  1170

seq1  AAGCATTTGCTGAATTC  1217
      |||||||||||||||||
seq2  AAGCATTTGCTGAATTC  1187

seq1: chr14_100941237_100942334
seq2: B6Ng01-159L03.g_68_1166

seq1  GAATTCTTGAACTTTCCATTGGTAGACCATCAGTCATTTTTGGACCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAACTTTCCATTGGTAGACCATCAGTCATTTTTGGACCAGTT  50

seq1  GGATCTCAGCCTGTAAGCTACTCTAATAATTTTCCCATTCCATTTATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCAGCCTGTAAGCTACTCTAATAATTTTCCCATTCCATTTATATA  100

seq1  TAGATTCATGCAATAAGTTTTGCTACCTTAGAGAATCCAGACTATTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCATGCAATAAGTTTTGCTACCTTAGAGAATCCAGACTATTACAA  150

seq1  TGTGTTCCTGGGGTTTCTGAAGTTAGAGCTAGGGTAGGGCTCAGTTAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCCTGGGGTTTCTGAAGTTAGAGCTAGGGTAGGGCTCAGTTAGAG  200

seq1  CTATGCCTACCTTTTGAGCAAAGAAGCCAACATTCTCTAGAGTTTAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCTACCTTTTGAGCAAAGAAGCCAACATTCTCTAGAGTTTAAGCA  250

seq1  TATTTATATTGCAGATTTTCTGAAGTCTGTGGAAAGCTCTCAGGCTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATATTGCAGATTTTCTGAAGTCTGTGGAAAGCTCTCAGGCTTCCA  300

seq1  TGGATGAGTTGACGGTTGTTACCTAGGTCATGTGCATGGGAGTCCATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAGTTGACGGTTGTTACCTAGGTCATGTGCATGGGAGTCCATATA  350

seq1  GTCCTCACATGCCGAGGGTGAAGTCTTGGCTTAGACTGGGATTGAGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCACATGCCGAGGGTGAAGTCTTGGCTTAGACTGGGATTGAGATTT  400

seq1  TTCTAAGTAGGACGGTTATAAGTATGATAATTGAAGGCCCTATATGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTAGGACGGTTATAAGTATGATAATTGAAGGCCCTATATGTTTT  450

seq1  AAATATATCCTTAGGCTTAGTCCTTAGAGATATATCAACTTTGTAATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATCCTTAGGCTTAGTCCTTAGAGATATATCAACTTTGTAATTCT  500

seq1  AGAAGCATCAGTAGCAGTCCAACATGAGATTTACAAAATTAGATTTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCATCAGTAGCAGTCCAACATGAGATTTACAAAATTAGATTTCTAC  550

seq1  AACAATACTGTTGTAATGTATATGATGATCTGTGCTCAGTTAAATAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATACTGTTGTAATGTATATGATGATCTGTGCTCAGTTAAATAACTG  600

seq1  TAATGTTCATTAGCTTTTTCTCTGTGAAGGGCAGGTACTGAAAGAAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTCATTAGCTTTTTCTCTGTGAAGGGCAGGTACTGAAAGAAGGAG  650

seq1  TTGGGTTTTGAAGAAAATAGAATACATTTTTGATCAACATCAGGAACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTTGAAGAAAATAGAATACATTTTTGATCAACATCAGGAACCAG  700

seq1  CACGCACCAAATCTTGCCGACTGCCTGTTCTTTCAAAGGAAATTTTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCACCAAATCTTGCCGACTGCCTGTTCTTTCAAAGGAAATTTTGTTG  750

seq1  GTAGATGACCACACTCATTTCTTTATGT-CCTGCTTGTGATTGTTTGCAT  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTAGATGACCACACTCATTTCTTTATGTCCCTGCTTGTGATTGTTTGCAT  800

seq1  TATATATTGGGCGGACTGTGGCAGATCCTATAAATGTCCCA-TTTTTCCC  848
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  TATATATTGGGCGGACTGTGGCAGATCCTATAATTGTCCCATTTTTTCCC  850

seq1  TTTACACTA-TAGACTGTTACAC-ATATTTGAATTAGTTCAGTTGAAAA-  895
      ||||||||| ||||||||||||| ||||||| ||||| ||| ||||||| 
seq2  TTTACACTATTAGACTGTTACACAATATTTGGATTAG-TCA-TTGAAAAT  898

seq1  TGATGGAATGATACTGTATTGTGTTGCTGGATAGTAAGATACTCCAAAAC  945
      |||||||||||||||||||||||||||||||||   ||||| ||||||||
seq2  TGATGGAATGATACTGTATTGTGTTGCTGGATAAGTAGATA-TCCAAAAC  947

seq1  TTAACGGCTTAAAAATAATACTCCAGGTTTCAAGAACTTGCACAGTCTAA  995
      |||||||||  |||||||||||||||||||| ||||||||||||||||||
seq2  TTAACGGCT--AAAATAATACTCCAGGTTTC-AGAACTTGCACAGTCTAA  994

seq1  ATAATTTTTTAAAGCATAATTCTTTTCAAAGGTAATATAGTCATCCCATC  1045
      |||| |||||||||||| ||||||||||||||| |||||||||| |||||
seq2  ATAA-TTTTTAAAGCAT-ATTCTTTTCAAAGGT-ATATAGTCAT-CCATC  1040

seq1  AAAATCAACACTCGTTGTCCTCATTCCAT----GTGTGTG----TGTGTG  1087
       |||||||| |||| ||||||||||||||    |||||||    ||| ||
seq2  -AAATCAAC-CTCGGTGTCCTCATTCCATGATGGTGTGTGTTGTTGTATG  1088

seq1  TGTGTGTGTGT  1098
      ||||| |||||
seq2  TGTGTTTGTGT  1099