BAC Information

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BAC

Clone NameB6Ng01-160H24
Chromosome14 (Build37)
Map Location 96,710,553 - 96,877,541
singlet/doubletdoublet
Overlap geneKlhl1
Upstream geneLOC100043784, LOC382931, 4921530L21Rik
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160H24.bB6Ng01-160H24.g
ACCDH953859DH953860
length1,091994
definitionDH953859|Mus musculus domesticus DNA, BAC clone: B6Ng01-160H24, 5' end.DH953860|Mus musculus domesticus DNA, BAC clone: B6Ng01-160H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,876,528 - 96,877,541)(96,710,553 - 96,711,532)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgattttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagatccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacaggataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttatcgaagatcaagt
gaaagatagggattcttgaagcactatttaataataaaaaaaagttaaac
atagagattatgtatatcaagggtaaaaagtaaaagcagataccattata
cttttttattttttttattggatattttctttatttatgtttaaatgtta
tcacctttcctggttcctagcaacccccacccctgagaaacctccaatct
catcatcccttcactctgcttcaatgagggtgttttcccacccacctacc
cactcctgcttccttgaactcgaattctcattcactgggtcatggagcct
tctcaggaacaaggacctcttctcccattgttggtcaacaactcatcctc
tgccccacatgtggctggagccatggttccctcatatgtactctttggtt
ggtgatttagtccctaggagctctggggatactggttggttcacattatt
ggttcctcttatggggctgcaaatcccatcagctgcctctgtcctttctc
taactcctccactggggacctcatgcttagtccaatgtttggctgggaac
atccacctttggtgaaggtcaggctcttggcaagctctcaa
gaattcttacaagatcctgaatgttcaaagagtgtgtctctgagtcatgt
gcctactcttggggttgtttccttctcttgatttgacatgtccagcttag
ttgtcatggtttttctttcatttcattatatttttatgttgttatatttt
attattatcctttagaagctcgtgctttttaaatgagagacagaaaggaa
gtggatgtggaggggaggaaagcagaaggaactgggataaggagatggag
ggcaaaccataatcaggatttttttatgtgaagaaagacttcatatttaa
tataatggaataaaagactttgaatagtctatgaagtgcagctaaatcaa
tatagtgtctttgagagttcatggaagaactatacaaaacagtacttgga
gaaatgcatcaatactggagattctaacactatagaaacaatgtgtgtag
ctggcagaaataaggggggaaaagaaataaggagaagaggaaaaaagtga
agagtgagattgtatttcatcatgactagcagtcagtaagaaccatgctt
ttacatggattacaatttttaaatgttaaacataaaagtagaaaaataat
gattggcaagtcaatgcccttatgtcccccaaactataattcatggataa
attattaaagtatctattttgtttaaaaagataaatgtatactaaaatgt
ggaagttaacttagttaattccattgtatatttaaaattaaaaccttttc
atgttacaaagaaaaccaatgaattgaatgaatggtgaataagccattac
attaactaaaattttaatctagaaatacccaaaataaaaccttaactttt
ttctcccatgacaatctcaatatcacttagagcaccattatccttgatat
gaaaataataggcaggattcacatgacacataccggttttggcaaagggc
tctcggcatctaatgtcttgaataattgatttctacaatcaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_96876528_96877541
seq2: B6Ng01-160H24.b_120_1132 (reverse)

seq1  TTGAGAGGCTCTGCC-AGAGCCTGACAATCA-CAGAGGTGGATGCTCCCA  48
      |||||| ||| |||| ||||||||||  ||| || ||||||||| |||||
seq2  TTGAGA-GCT-TGCCAAGAGCCTGACCTTCACCAAAGGTGGATGTTCCCA  48

seq1  GCCAAACATTGGACTAAGCATGAGGTCCCCAGTGGAGGAGTTAGAGAAAG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACATTGGACTAAGCATGAGGTCCCCAGTGGAGGAGTTAGAGAAAG  98

seq1  GACAGAGGCAGCTGATGGGATTTGCAGCCCCATAAGAGGAA-CAATAATG  147
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACAGAGGCAGCTGATGGGATTTGCAGCCCCATAAGAGGAACCAATAATG  148

seq1  TGAACCAACCAGTATCCCCAGAGCTCCTAGGGACTAAATCACCAACCAAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAACCAGTATCCCCAGAGCTCCTAGGGACTAAATCACCAACCAAA  198

seq1  GAGTACATATGGAGGGAACCATGGCTCCAGCCACATGTGGGGCAGAGGAT  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGTACATAT-GAGGGAACCATGGCTCCAGCCACATGTGGGGCAGAGGAT  247

seq1  GAGTTTGTTGACCAACAATGGGAGAAGAGGTCCTTGTTCCTGAGAAGGCT  297
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAG-TTGTTGACCAACAATGGGAGAAGAGGTCCTTGTTCCTGAGAAGGCT  296

seq1  CCATGACCCAGTGAATGGGAATTCGAGTTCAAGGAAGCAGGAGTGGGTAG  347
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCATGACCCAGTGAATGAGAATTCGAGTTCAAGGAAGCAGGAGTGGGTAG  346

seq1  GTGGGTGGGAAAACACCCTCATTGAAGCAGAGTGAAGGGATGATGAGATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGGGAAAACACCCTCATTGAAGCAGAGTGAAGGGATGATGAGATT  396

seq1  GGAGGTTTCTCAGGGGTGGGGGTTGCTAGGAACCAGGAAAGGTGATAACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTTCTCAGGGGTGGGGGTTGCTAGGAACCAGGAAAGGTGATAACA  446

seq1  TTTAAACATAAATAAAGAAAATATCCAATAAAAAAAATAAAAAAGTATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACATAAATAAAGAAAATATCCAATAAAAAAAATAAAAAAGTATAA  496

seq1  TGGTATCTGCTTTTACTTTTTACCCTTGATATACATAATCTCTATGTTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCTGCTTTTACTTTTTACCCTTGATATACATAATCTCTATGTTTA  546

seq1  ACTTTTTTTTATTATTAAATAGTGCTTCAAGAATCCCTATCTTTCACTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTTATTATTAAATAGTGCTTCAAGAATCCCTATCTTTCACTTG  596

seq1  ATCTTCGATAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCGATAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTT  646

seq1  CAACAATTGGTGCTGGCACAACTGGTTGTTATCCTGTAGAAGAATGCGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTGGTGCTGGCACAACTGGTTGTTATCCTGTAGAAGAATGCGAA  696

seq1  TCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAG  746

seq1  GATCTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGG  796

seq1  GAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAG  846

seq1  CAATGGCTTGTGCTGTAAAATCGAGAATTGACAAATGGGACCTAATGAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTTGTGCTGTAAAATCGAGAATTGACAAATGGGACCTAATGAAA  896

seq1  CTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACC  946

seq1  ACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGAC  996

seq1  TAATATCCAACATATAT  1014
      |||||||||||||||||
seq2  TAATATCCAACATATAT  1013

seq1: chr14_96710553_96711532
seq2: B6Ng01-160H24.g_67_1060

seq1  GAATTCTTACAAGATCCTGAATGTTCAAAGAGTGTGTCTCTGAGTCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAAGATCCTGAATGTTCAAAGAGTGTGTCTCTGAGTCATGT  50

seq1  GCCTACTCTTGGGGTTGTTTCCTTCTCTTGATTTGACATGTCCAGCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTCTTGGGGTTGTTTCCTTCTCTTGATTTGACATGTCCAGCTTAG  100

seq1  TTGTCATGGTTTTTCTTTCATTTCATTATATTTTTATGTTGTTATATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGGTTTTTCTTTCATTTCATTATATTTTTATGTTGTTATATTTT  150

seq1  ATTATTATCCTTTAGAAGCTCGTGCTTTTTAAATGAGAGACAGAAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATCCTTTAGAAGCTCGTGCTTTTTAAATGAGAGACAGAAAGGAA  200

seq1  GTGGATGTGGAGGGGAGGAAAGCAGAAGGAACTGGGATAAGGAGATGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGTGGAGGGGAGGAAAGCAGAAGGAACTGGGATAAGGAGATGGAG  250

seq1  GGCAAACCATAATCAGGATTTTTTTATGTGAAGAAAGACTTCATATTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACCATAATCAGGATTTTTTTATGTGAAGAAAGACTTCATATTTAA  300

seq1  TATAATGGAATAAAAGACTTTGAATAGTCTATGAAGTGCAGCTAAATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGGAATAAAAGACTTTGAATAGTCTATGAAGTGCAGCTAAATCAA  350

seq1  TATAGTGTCTTTGAGAGTTCATGGAAGAACTATACAAAACAGTACTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTCTTTGAGAGTTCATGGAAGAACTATACAAAACAGTACTTGGA  400

seq1  GAAATGCATCAATACTGGAGATTCTAACACTATAGAAACAATGTGTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCATCAATACTGGAGATTCTAACACTATAGAAACAATGTGTGTAG  450

seq1  CTGGCAGAAATAAGGGGGGAAAAGAAATAAGGAGAAGAGGAAAAAAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAAATAAGGGGGGAAAAGAAATAAGGAGAAGAGGAAAAAAGTGA  500

seq1  AGAGTGAGATTGTATTTCATCATGACTAGCAGTCAGTAAGAACCATGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGATTGTATTTCATCATGACTAGCAGTCAGTAAGAACCATGCTT  550

seq1  TTACATGGATTACAA-TTTTAAATGTT-AACATAAAAGTAGAAAAATAAT  598
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TTACATGGATTACAATTTTTAAATGTTAAACATAAAAGTAGAAAAATAAT  600

seq1  GATTGGCAAGTCAATG-CCTTATGT-CCCCAAACTATAATTCATGGATAA  646
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  GATTGGCAAGTCAATGCCCTTATGTCCCCCAAACTATAATTCATGGATAA  650

seq1  ATTATTAAAGTATCTATTTAG-TTAAAAAGAT-AATGTATACT-AAATGT  693
      ||||||||||||||||||| | |||||||||| |||||||||| ||||||
seq2  ATTATTAAAGTATCTATTTTGTTTAAAAAGATAAATGTATACTAAAATGT  700

seq1  GGAAGTTAACTTAGTT-ATTCCATTGTATA-TTAAAAATAAAACC-TTTC  740
      |||||||||||||||| ||||||||||||| |||||| ||||||| ||||
seq2  GGAAGTTAACTTAGTTAATTCCATTGTATATTTAAAATTAAAACCTTTTC  750

seq1  ATGTTACAAAGAAAACCAATGAA-TGAATGATGGATGAATAAG-CAATAC  788
      ||||||||||||||||||||||| |||||||  | |||||||| || |||
seq2  ATGTTACAAAGAAAACCAATGAATTGAATGAATGGTGAATAAGCCATTAC  800

seq1  ATTAACTAAAATATAAATCTAGAAATACCCAAAATAAAACCTTA--CTTT  836
      |||||||||||| | |||||||||||||||||||||||||||||   |||
seq2  ATTAACTAAAATTTTAATCTAGAAATACCCAAAATAAAACCTTAACTTTT  850

seq1  TTCTCCAGTGAC-ATCTCAATATCACTTAGAGCACCATAATCC-TGATAT  884
      ||||||  |||| ||||||||||||||||||||||||| |||| ||||||
seq2  TTCTCCCATGACAATCTCAATATCACTTAGAGCACCATTATCCTTGATAT  900

seq1  GAAATAAATAGGCAGTATTCACATTAACACATTACGGTTTTGGCAAAGGG  934
      ||||  ||||||||| ||||||| | ||||||  ||||||||||||||||
seq2  GAAAATAATAGGCAGGATTCACA-TGACACATACCGGTTTTGGCAAAGGG  949

seq1  CTCTCTGGCATCTAATGTCATTGGAATAATTGATTTC-ACAA-CAACA  980
      ||||| |||||||||||||  | |||||||||||||| |||| |||||
seq2  CTCTC-GGCATCTAATGTC--TTGAATAATTGATTTCTACAATCAACA  994