BAC Information

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BAC

Clone NameB6Ng01-162N14
Chromosome14 (Build37)
Map Location 80,330,685 - 80,471,720
singlet/doubletdoublet
Overlap geneEG629734, Olfm4
Upstream gene1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8
Downstream geneLOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162N14.bB6Ng01-162N14.g
ACCDH955583DH955584
length1,1241,090
definitionDH955583|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N14, 5' end.DH955584|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,330,685 - 80,331,803)(80,470,643 - 80,471,720)
sequence
gaattcacagtagaaaggcaaagtggtctgatggttatagacttgagttc
agaaaccccaaaagcctgtgggcatttatgttgcttctgccactttctgg
ctgtggaaggtaaggcatgctgtgcctcattttccttatcttcaacatac
aggcacaaggagtgtccagaccctcttgtcataagtgatggttgtggggg
aatgttgctcatttggtagaatgcttgtttgttatgcacaaagccccggg
ttcgattctcagtatcatgtaaaccatgtgcgatgtcacatgcctgtgat
tccaacccatgggggcagagtcaaagtcaacgttatttccagcaatacag
aaagtttgacgttagcccaggctacccaagagcctgccttaataaagaag
atggatggtgaggctacccacctacctgaagagcatccctctgcagaagg
ctccctgctgaagtgcgacttaggtatatccatacatttcattaagcata
ttgtttctttaatcactcctacacatattattttaataatatcttcctcc
gaatcttgccatgtctctagtcactcaccatgatagtagtgatagaagtc
ttgacttcaagtggcaaatggctctccatggagaatgcaaccaagcttcc
ttcctttcttctccagaacttgccattctgaatctctgtcactgttaaac
aagagtctgggtcatcggaatctttctggttgcccttttccacactcaga
aacccttgatttttttctatgtttctttacccttttaagtcataagctag
tctgtgatctggaatacagagggtttaagcaacaacaacagcagcaacag
cagcttgttcactcatttgaaagctatggagaacaacaacaacaacaaca
acatacctattcaagctcttacctcagaatcttttggcatcacgcaaagg
agagccaccatctttcttctcagagcaaattggcagggcttctttttcag
tataccaccatgtttctctgagataaacgcttgatgagttggaagcctgg
cgcttcctgctcctgatagctgggtccctttgacttctcgttaccttttc
agcaattcattcaacaagaatcaa
gaattcatcaggaattaaacttttagaaatgggactcagggtaaattgtc
aaaggaagactaagatgtctaaagagctaacaatgcttcggggtgtcaaa
cacaatcaaagatttcatttttagtcacttccctgcttgcaagtggggag
tagagccatccataacaagtcagatcagaccagcatcgggctgagccaca
cacctgcagatgttgtcgagtccagttctatcattgctctaataacaaga
tctcagtgtagcaaagtcaagatgtagctatgacagtaatcatgatgggg
ttatccaagaaagacgttcacaggatttagagagagagagagagagagag
agagagagagagagagagaaccaaagcaaaagtcattgcaataattatct
ccacagttagcacaactaaatattgagacccctgatacaaagaaaatgaa
aagaacattgactgttaaaaataaagcccactagaaaaacagcagcaaaa
tcgtcttctagaacacagatggaagttgcttcagagtatcgattgaaaag
aatccaaacacactgacttatgtgtaattaacaaaaatgtttaattaatc
tgatgatggaaaatgtcatcaatcttatttgagttagttttaattcaaaa
gatgataccatcatgggtattttgctcaagtaatttcattttaattaatc
aaaaagcatgttctcacatatgcctttagtctcggtaaatcacaaaatgg
ctgacaaatttttctttctaggagaaaaattaaagatatcaattggaaac
actttctttgatattactgcttgatgcgttccaaagcaaaaattaaaaaa
tgttccaaaagatacatcatcttttcctctccctctcagcgtcatagaag
acagcagttcttttgtgaatgttcctggaatccatgagcaaatcttccac
ttaattttgaagaaaaggttgtgtttctcaggcttgaagggaaatcctgg
agtttgttttttctcatgacttgggcagaaaaaacaaagaccaaactact
gggaataattcatcaaatgaacagtctccattaggttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80330685_80331803
seq2: B6Ng01-162N14.b_46_1169

seq1  GAATTCACAGTAGAAAGGCAAAGTGGTCTGATGGTTATAGACTTGAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTAGAAAGGCAAAGTGGTCTGATGGTTATAGACTTGAGTTC  50

seq1  AGAAACCCCAAAAGCCTGTGGGCATTTATGTTGCTTCTGCCACTTTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCCAAAAGCCTGTGGGCATTTATGTTGCTTCTGCCACTTTCTGG  100

seq1  CTGTGGAAGGTAAGGCATGCTGTGCCTCATTTTCCTTATCTTCAACATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAGGTAAGGCATGCTGTGCCTCATTTTCCTTATCTTCAACATAC  150

seq1  AGGCACAAGGAGTGTCCAGACCCTCTTGTCATAAGTGATGGTTGTGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAAGGAGTGTCCAGACCCTCTTGTCATAAGTGATGGTTGTGGGGG  200

seq1  AATGTTGCTCATTTGGTAGAATGCTTGTTTGTTATGCACAAAGCCCCGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGCTCATTTGGTAGAATGCTTGTTTGTTATGCACAAAGCCCCGGG  250

seq1  TTCGATTCTCAGTATCATGTAAACCATGTGCGATGTCACATGCCTGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATTCTCAGTATCATGTAAACCATGTGCGATGTCACATGCCTGTGAT  300

seq1  TCCAACCCATGGGGGCAGAGTCAAAGTCAACGTTATTTCCAGCAATACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCCATGGGGGCAGAGTCAAAGTCAACGTTATTTCCAGCAATACAG  350

seq1  AAAGTTTGACGTTAGCCCAGGCTACCCAAGAGCCTGCCTTAATAAAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGACGTTAGCCCAGGCTACCCAAGAGCCTGCCTTAATAAAGAAG  400

seq1  ATGGATGGTGAGGCTACCCACCTACCTGAAGAGCATCCCTCTGCAGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGGTGAGGCTACCCACCTACCTGAAGAGCATCCCTCTGCAGAAGG  450

seq1  CTCCCTGCTGAAGTGCGACTTAGGTATATCCATACATTTCATTAAGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGCTGAAGTGCGACTTAGGTATATCCATACATTTCATTAAGCATA  500

seq1  TTGTTTCTTTAATCACTCCTACACATATTATTTTAATAATATCTTCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTTTAATCACTCCTACACATATTATTTTAATAATATCTTCCTCC  550

seq1  GAATCTTGCCATGTCTCTAGTCACTCACCATGATAGTAGTGATAGAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTGCCATGTCTCTAGTCACTCACCATGATAGTAGTGATAGAAGTC  600

seq1  TTGACTTCAAGTGGCAAATGGCTCTCCATGGAGAATGCAACCAAGCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTCAAGTGGCAAATGGCTCTCCATGGAGAATGCAACCAAGCTTCC  650

seq1  TTCCTTTCTTCTCCAGAACTTGCCATTCTGAATCTCTGTCACTGTTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTTCTCCAGAACTTGCCATTCTGAATCTCTGTCACTGTTAAAC  700

seq1  AAGAGTCTGGGTCATCGGAATCTTTCTGGTTGCCC-TTTCCACACTCAGA  749
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGAGTCTGGGTCATCGGAATCTTTCTGGTTGCCCTTTTCCACACTCAGA  750

seq1  AACCCTTGATTTTTTTCTATGTTTC-TTACCC-TTTAAGTCATAAGCTAG  797
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  AACCCTTGATTTTTTTCTATGTTTCTTTACCCTTTTAAGTCATAAGCTAG  800

seq1  TCTGTGATCTGGAATACAGAGGG-TTAAGCAACAACAACAGCAGCAACAG  846
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTGTGATCTGGAATACAGAGGGTTTAAGCAACAACAACAGCAGCAACAG  850

seq1  CAGCTTGTTCACTCATTTGAAAGCTATGGAGAACAACAACAACAACAACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGTTCACTCATTTGAAAGCTATGGAGAACAACAACAACAACAACA  900

seq1  ACAAACCTATCCAAGCTCTTACCTCAGAATC-TTTGGCATCACGCAAAGG  945
      ||| |||||| |||||||||||||||||||| ||||||||||||||||||
seq2  ACATACCTATTCAAGCTCTTACCTCAGAATCTTTTGGCATCACGCAAAGG  950

seq1  AGAGCCACCATCTTTC-TCTCAGAGCAAAATGGCAGGGCTTC-TTGTCAG  993
      |||||||||||||||| |||||||||||| |||||||||||| || ||||
seq2  AGAGCCACCATCTTTCTTCTCAGAGCAAATTGGCAGGGCTTCTTTTTCAG  1000

seq1  TATA-CACCATGTTTCTCTGAAGATAAACGCTTGATGGAGTTGGAAGCCT  1042
      |||| ||||||||||||||| ||||||||||||||| |||||||||||||
seq2  TATACCACCATGTTTCTCTG-AGATAAACGCTTGAT-GAGTTGGAAGCCT  1048

seq1  GGCTGCTTCCTGCTCCTTGATAGCTGGGTCCCTTTGACTCTCCGTGACCT  1092
      ||| |||||||||||| ||||||||||||||||||||||   ||| ||||
seq2  GGC-GCTTCCTGCTCC-TGATAGCTGGGTCCCTTTGACTTCTCGTTACCT  1096

seq1  TTTCAGCATTTCATTCAACAAG-ATCAA  1119
      |||||||| ||||||||||||| |||||
seq2  TTTCAGCAATTCATTCAACAAGAATCAA  1124

seq1: chr14_80470643_80471720
seq2: B6Ng01-162N14.g_70_1159 (reverse)

seq1  TTCAACCTAATGGAGACTTGTCATTTGAATGATTAT--CCAGTAG-TTGG  47
      ||||||||||||||||||  ||||||||   |||||  ||||||| ||||
seq2  TTCAACCTAATGGAGACTGTTCATTTGATGAATTATTCCCAGTAGTTTGG  50

seq1  TCTTTG-TTTTTCTG-CCAAGTTCTGAG-AAAAACAAACTC--AGATTTC  92
      |||||| |||||||| ||||||  |||| ||||||||||||   ||||||
seq2  TCTTTGTTTTTTCTGCCCAAGTCATGAGAAAAAACAAACTCCAGGATTTC  100

seq1  CC-TCAAGCCTGAGAAAACACAACCTTTTCTTCAAAA-TAAGTGAAAGAA  140
      || ||||||||||| |||||||||||||||||||||| |||||| ||| |
seq2  CCTTCAAGCCTGAG-AAACACAACCTTTTCTTCAAAATTAAGTGGAAG-A  148

seq1  TTTGCTCATGGA-TCCAGGAACATTCACAAAAGAACTGCTGTCTTCTATG  189
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCATGGATTCCAGGAACATTCACAAAAGAACTGCTGTCTTCTATG  198

seq1  ACGCTGAGAGGGAGAGGAAAAGATGATGTATCTTTTGGAACATTTTTTAA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGAGAGGGAGAGGAAAAGATGATGTATCTTTTGGAACATTTTTTAA  248

seq1  TTTTTGCTTTGGAACGCATCAAGCAGTAATATCAAAGAAAGTGTTTCCAA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTTTGGAACGCATCAAGCAGTAATATCAAAGAAAGTGTTTCCAA  298

seq1  TTGATATCTTTAATTTTTCTCCTAGAAAG-AAAATTTGTCAGCCATTTTG  338
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTGATATCTTTAATTTTTCTCCTAGAAAGAAAAATTTGTCAGCCATTTTG  348

seq1  TGATTTACCGAGACTAAAGGCATATGTGAGAACATGCTTTTTGATTAATT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTACCGAGACTAAAGGCATATGTGAGAACATGCTTTTTGATTAATT  398

seq1  -AAATGAAATTACTTGAGCAAAATACCCATGATGGTATCATC-TTTGAAT  436
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAATGAAATTACTTGAGCAAAATACCCATGATGGTATCATCTTTTGAAT  448

seq1  TAAAACTAACTCAAATAAGATTGATGACATTTTCCATCATCAGATTAATT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTAACTCAAATAAGATTGATGACATTTTCCATCATCAGATTAATT  498

seq1  AAACATTTTTGTTAATTACACATAAGTCAGTGTGTTTGGATTCTTTTCAA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTTGTTAATTACACATAAGTCAGTGTGTTTGGATTCTTTTCAA  548

seq1  TCGATACTCTGAAGCAACTTCCATCTGTGTTCTAGAAGACGATTTTGCTG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATACTCTGAAGCAACTTCCATCTGTGTTCTAGAAGACGATTTTGCTG  598

seq1  CTGTTTTTCTAGTGGGCTTTATTTTTAACAGTCAATGTTCTTTTCATTTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTCTAGTGGGCTTTATTTTTAACAGTCAATGTTCTTTTCATTTT  648

seq1  CTTTGTATCAGGGGTCTCAATATTTAGTTGTGCTAACTGTGGAGATAATT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATCAGGGGTCTCAATATTTAGTTGTGCTAACTGTGGAGATAATT  698

seq1  ATTGCAATGACTTTTGCTTTGGTTCTCTCTCTCTCTCTCTCTCTCTCTCT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAATGACTTTTGCTTTGGTTCTCTCTCTCTCTCTCTCTCTCTCTCT  748

seq1  CTCTCTCTCTCTCTAAATCCTGTGAACGTCTTTCTTGGATAACCCCATCA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTAAATCCTGTGAACGTCTTTCTTGGATAACCCCATCA  798

seq1  TGATTACTGTCATAGCTACATCTTGACTTTGCTACACTGAGATCTTGTTA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTGTCATAGCTACATCTTGACTTTGCTACACTGAGATCTTGTTA  848

seq1  TTAGAGCAATGATAGAACTGGACTCGACAACATCTGCAGGTGTGTGGCTC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCAATGATAGAACTGGACTCGACAACATCTGCAGGTGTGTGGCTC  898

seq1  AGCCCGATGCTGGTCTGATCTGACTTGTTATGGATGGCTCTACTCCCCAC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGATGCTGGTCTGATCTGACTTGTTATGGATGGCTCTACTCCCCAC  948

seq1  TTGCAAGCAGGGAAGTGACTAAAAATGAAATCTTTGATTGTGTTTGACAC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGCAGGGAAGTGACTAAAAATGAAATCTTTGATTGTGTTTGACAC  998

seq1  CCCGAAGCATTGTTAGCTCTTTAGACATCTTAGTCTTCCTTTGACAATTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAAGCATTGTTAGCTCTTTAGACATCTTAGTCTTCCTTTGACAATTT  1048

seq1  ACCCTGAGTCCCATTTCTAAAAGTTTAATTCCTGATGAATTC  1078
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGTCCCATTTCTAAAAGTTTAATTCCTGATGAATTC  1090