BAC Information

Click to search

BAC

Clone NameB6Ng01-164L06
Chromosome14 (Build37)
Map Location 69,448,955 - 69,603,899
singlet/doubletdoublet
Overlap genenone
Upstream geneDock5, Nefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
Downstream geneStc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164L06.bB6Ng01-164L06.g
ACCDH956955DH956956
length1,120954
definitionDH956955|Mus musculus domesticus DNA, BAC clone: B6Ng01-164L06, 5' end.DH956956|Mus musculus domesticus DNA, BAC clone: B6Ng01-164L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,602,749 - 69,603,899)(69,448,955 - 69,449,755)
sequence
gaattctgaaaggaaaacaagaaaaatacatttaaaattgccacaccacc
caaaatggcacgctaaatatgacatgcatggtacagatactgtgtgctgg
actagtgcataggaagaaggaatattttccagctgttagaatccagctgt
tgggattaacagcataaagatgactcagggggaggatatcaggtctgctt
taggaggcctttactgttaggtcattccaggaacctgactccagtgagaa
ttcccagggctttcttagcagacagttggcaggctgacccgactgtaact
cagacactagcagcttgatacacggtcacagccagtgtatcccttttccc
tctctgactgtgaattgggttctttgggaagctgtagaaattcttcaagg
tcacaaagttccattattgtgttttgttcttgtatatgaccaaagattcc
ctatgctggtaactcatggacattaagagaaagattagaattcagaggaa
ctctctcttggttttcataatgataacctgatagatctagagacagtcac
aaaatatgcatgtgcctagaagactgctctctgagaatgccttgtgctcc
agctagctactactgaaccttgagaaactcatcatggttgtcaatatgcc
catgggttcatatataactctggtatcttgtcagatgcccctggactttg
cctatctctccagctcttcggagtaagaaagacccgcactcctgcaattt
ggccagaatggatgaaaaagagttggatttttggagcgtgtattcttctc
atatacagatgaatcttggctctaaaactttccttggttttcaagccttt
gtttgtcctagggcagctgtgagcagaagggaggttggcatcaccttgtg
cacttcgtgaatcttcagaatctactttattattgagcttctggcaacca
gttcctgtaagtgcagagacagcccagagacactgtagttcttatactat
agactttacgtatggttttaggtgacatcattaaaggtttatagatgctg
attaatatataggcagtactgagcacagagcatacaatagcacgacgtaa
gatgtctactgtctcatgta
gaattctttcatttaaaagatggtggttgttttttttttttttttttttt
ttttggttggttttgttgctgttgttgttgtttgtttgcttgcttcttta
ttttttctttaatatgagtatttgcctgaatgtatgtagacaaaaccaat
acctgcactgcccaaagagcccataagaaggtgttgcacctggagctgga
gtgacagacagttgtgagctgccatgtgggtgctggaaaaatgacagaag
cagcaagtgccattgcccattgagcaatatccagcccctacacagaattc
tttatcattttcctttctggttgttcatttttaacatacagaaatgcatc
cgagttttctatgttgactttttatcttgtactttgtcttaattattttt
cttagctgtacaatccttttctacatggaatcttttaagttttctacatt
tttcattgtgtcagctaacaaacaaatgaaaatgactgtttccttttaca
tgtggaagctttttacttattgctcccgttcagttgctttgacttaaatt
aagatattgaatcagtgatcaaaagtcactcaaagtcaagcccaggaata
gatggatgcctctgctgctggattctaaacatttaaagaagaattagtcc
taatccttcttaagcacttccaaaacactgagaaattgaaagagctccaa
attcattttctgaggtcaacattgtcctgataccaaagccaaacaaagat
tttcataaagaaaaactctgcaggccaatatttttcaaaattatagctac
aaaagtcttcagcacagtacttagctaaccaaagtataaacacatttaaa
agacagtttactataaccaaactgaactcgttctgggaatgcagtagact
tcaatatatgcaaatgagctatgaagtagtccatattaacaaatggtttg
caga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_69602749_69603899
seq2: B6Ng01-164L06.b_47_1166 (reverse)

seq1  TACATGAGACAGTAGGACCATCTTATACTGTCTGTGGCTATATGTATGGC  50
      |||||||||||||||   |||||||    ||| || ||||| ||||| ||
seq2  TACATGAGACAGTAG--ACATCTTA---CGTC-GT-GCTAT-TGTAT-GC  41

seq1  TCTTGTTGCTCAGTTAACTGCCTATTTAATATTAATTCAGCCATTCCTAA  100
      |||   ||||||||  |||||||||   ||||||| |||| |||  || |
seq2  TCT--GTGCTCAGT--ACTGCCTAT---ATATTAA-TCAG-CAT--CT-A  79

seq1  TAAACCCTTTAATGATGTCACCTTAAAACCATACGTAAAGTTCCTTATAG  150
      |||| ||||||||||||||||| ||||||||||||||||||    |||| 
seq2  TAAA-CCTTTAATGATGTCACC-TAAAACCATACGTAAAGT---CTATA-  123

seq1  GTATAAGGAACTACAGTGTCTCTGGGCTGTCTTCTGCACTTACAGGAACT  200
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  GTATAA-GAACTACAGTGTCTCTGGGCTGTC-TCTGCACTTACAGGAACT  171

seq1  GGTTGCCAGAAGCTCAAATAATAAAGTAGATTCTGAAGAATTCACGAAGT  250
      ||||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  GGTTGCCAGAAGCTC-AATAATAAAGTAGATTCTGAAG-ATTCACGAAGT  219

seq1  GCACAAGGTGATGCCAACCTCCCTTCTGCTCACAGCTGCCCTAGGACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGGTGATGCCAACCTCCCTTCTGCTCACAGCTGCCCTAGGACAAA  269

seq1  CAAAGGCTTGAAAACCAAGGAAAGTTTTAGAGCCAAGATTCATCTGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTTGAAAACCAAGGAAAGTTTTAGAGCCAAGATTCATCTGTATA  319

seq1  TGAGAAGAATACACGCTCCAAAAATCCAACTCTTTTTCATCCATTCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAATACACGCTCCAAAAATCCAACTCTTTTTCATCCATTCTGGC  369

seq1  CAAATTGCAGGAGTGCGGGTCTTTCTTACTCCGAAGAGCTGGAGAGATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGCAGGAGTGCGGGTCTTTCTTACTCCGAAGAGCTGGAGAGATAG  419

seq1  GCAAAGTCCAGGGGCATCTGACAAGATACCAGAGTTATATATGAACCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTCCAGGGGCATCTGACAAGATACCAGAGTTATATATGAACCCAT  469

seq1  GGGCATATTGACAACCATGATGAGTTTCTCAAGGTTCAGTAGTAGCTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATATTGACAACCATGATGAGTTTCTCAAGGTTCAGTAGTAGCTAGC  519

seq1  TGGAGCACAAGGCATTCTCAGAGAGCAGTCTTCTAGGCACATGCATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCACAAGGCATTCTCAGAGAGCAGTCTTCTAGGCACATGCATATTT  569

seq1  TGTGACTGTCTCTAGATCTATCAGGTTATCATTATGAAAACCAAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGTCTCTAGATCTATCAGGTTATCATTATGAAAACCAAGAGAGA  619

seq1  GTTCCTCTGAATTCTAATCTTTCTCTTAATGTCCATGAGTTACCAGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTGAATTCTAATCTTTCTCTTAATGTCCATGAGTTACCAGCATA  669

seq1  GGGAATCTTTGGTCATATACAAGAACAAAACACAATAATGGAACTTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCTTTGGTCATATACAAGAACAAAACACAATAATGGAACTTTGTG  719

seq1  ACCTTGAAGAATTTCTACAGCTTCCCAAAGAACCCAATTCACAGTCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAAGAATTTCTACAGCTTCCCAAAGAACCCAATTCACAGTCAGAG  769

seq1  AGGGAAAAGGGATACACTGGCTGTGACCGTGTATCAAGCTGCTAGTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAGGGATACACTGGCTGTGACCGTGTATCAAGCTGCTAGTGTCT  819

seq1  GAGTTACAGTCGGGTCAGCCTGCCAACTGTCTGCTAAGAAAGCCCTGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACAGTCGGGTCAGCCTGCCAACTGTCTGCTAAGAAAGCCCTGGGA  869

seq1  ATTCTCACTGGAGTCAGGTTCCTGGAATGACCTAACAGTAAAGGCCTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCACTGGAGTCAGGTTCCTGGAATGACCTAACAGTAAAGGCCTCCT  919

seq1  AAAGCAGACCTGATATCCTCCCCCTGAGTCATCTTTATGCTGTTAATCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGACCTGATATCCTCCCCCTGAGTCATCTTTATGCTGTTAATCCC  969

seq1  AACAGCTGGATTCTAACAGCTGGAAAATATTCCTTCTTCCTATGCACTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGGATTCTAACAGCTGGAAAATATTCCTTCTTCCTATGCACTAG  1019

seq1  TCCAGCACACAGTATCTGTACCATGCATGTCATATTTAGCGTGCCATTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCACACAGTATCTGTACCATGCATGTCATATTTAGCGTGCCATTTT  1069

seq1  GGGTGGTGTGGCAATTTTAAATGTATTTTTCTTGTTTTCCTTTCAGAATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTGTGGCAATTTTAAATGTATTTTTCTTGTTTTCCTTTCAGAATT  1119

seq1  C  1151
      |
seq2  C  1120

seq1: chr14_69448955_69449755
seq2: B6Ng01-164L06.g_69_870

seq1  GAATTCTTTCATTTAAAAGATGGTGGTTGTTTTTTTTTTTTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATTTAAAAGATGGTGGTTGTTTTTTTTTTTTTTTTTTTTT  50

seq1  TTTTGGTTGGTTTTGTTGCTGTTGTTGTTGTTTGTTTGCTTGCTTCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTGGTTTTGTTGCTGTTGTTGTTGTTTGTTTGCTTGCTTCTTTA  100

seq1  TTTTTTCTTTAATATGAGTATTTGCCTGAATGTATGTAGACAAAACCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTAATATGAGTATTTGCCTGAATGTATGTAGACAAAACCAAT  150

seq1  ACCTGCACTGCCCAAAGAGCCCATAAGAAGGTGTTGCACCTGGAGCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCACTGCCCAAAGAGCCCATAAGAAGGTGTTGCACCTGGAGCTGGA  200

seq1  GTGACAGACAGTTGTGAGCTGCCATGTGGGTGCTGGAAAAATGACAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGACAGTTGTGAGCTGCCATGTGGGTGCTGGAAAAATGACAGAAG  250

seq1  CAGCAAGTGCCATTGCCCATTGAGCAATATCCAGCCCCTACACAGAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTGCCATTGCCCATTGAGCAATATCCAGCCCCTACACAGAATTC  300

seq1  TTTATCATTTTCCTTTCTGGTTGTTCATTTTTAACATACAGAAATGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATTTTCCTTTCTGGTTGTTCATTTTTAACATACAGAAATGCATC  350

seq1  CGAGTTTTCTATGTTGACTTTTTATCTTGTACTTTGTCTTAATTATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTTTCTATGTTGACTTTTTATCTTGTACTTTGTCTTAATTATTTTT  400

seq1  CTTAGCTGTACAATCCTTTTCTACATGGAATCTTTTAAGTTTTCTACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTGTACAATCCTTTTCTACATGGAATCTTTTAAGTTTTCTACATT  450

seq1  TTTCATTGTGTCAGCTAACAAACAAATGAAAATGACTGTTTCCTTTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGTGTCAGCTAACAAACAAATGAAAATGACTGTTTCCTTTTACA  500

seq1  TGTGGAAGCTTTTTACTTATTGCTCCCGTTCAGTTGCTTTGACTTAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGCTTTTTACTTATTGCTCCCGTTCAGTTGCTTTGACTTAAATT  550

seq1  AAGATATTGAATCAGTGATCAAAAGTCACTCAAAGTCAAGCCCAGGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTGAATCAGTGATCAAAAGTCACTCAAAGTCAAGCCCAGGAATA  600

seq1  GATGGATGCCTCTGCTGCTGGATTCTAAACATTTAAAGAAGAATTAGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGCCTCTGCTGCTGGATTCTAAACATTTAAAGAAGAATTAGTCC  650

seq1  TAATCCTTCTTAAGCACTTCCAAAACACTGAGAAATTGAAAGAGCTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTTCTTAAGCACTTCCAAAACACTGAGAAATTGAAAGAGCTCCAA  700

seq1  ATTCATTTTCTGAGGTCAACATTGTCCTGATACCAAAGCCAAACAAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTCTGAGGTCAACATTGTCCTGATACCAAAGCCAAACAAAGAT  750

seq1  TTTCATAAAGAAAAACTCTGCAGGCCAATA-TTTTCAAAATTATAGCTAC  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTCATAAAGAAAAACTCTGCAGGCCAATATTTTTCAAAATTATAGCTAC  800

seq1  AA  801
      ||
seq2  AA  802