BAC Information

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BAC

Clone NameB6Ng01-168B05
Chromosome14 (Build37)
Map Location 56,401,638 - 56,402,866
singlet/doubletsinglet
Overlap geneAdcy4
Upstream geneLOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1
Downstream geneRipk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168B05.bB6Ng01-168B05.g
ACCDH959409DH959410
length1,1891,194
definitionDH959409|Mus musculus domesticus DNA, BAC clone: B6Ng01-168B05, 5' end.DH959410|Mus musculus domesticus DNA, BAC clone: B6Ng01-168B05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagattgccctgaataaactattccaccatggaaaatgcttgcat
gtttctatagtcatagaacaagagatagtcgtgactcaaggtatttacca
acacactggtgtagacagcagatggacaggttacagcaaagtgcagaaaa
atttgccatggcattcggatgctttctgatgccatcccgagcacatggct
ggtgtaaagctgtggtctactacaaatccacccccagaggttttgtctga
tagtcagaggatgtcaggtcagatgcagatgatgggcaatgagtgagatg
gagataacccagaataatctgctctgaatctgcactattccaactctttt
ctaaagctctaatcagcctttgtggaatcttaacacaggtgtggcttttt
ccttggaacttagtctacaaataggaacaaagaactctcacatacacaac
ttgtaaagtatgcatttcaatgataagcaaaggtcagatggacaggtgtg
gacaggcatggcagcacacacctttaatcccagcactcaggaagctgaag
aagggagatctctgtaaatccagataaaattagacaactctggctggaga
gatggctcagtggttaagagcaccgactgctcttccagaggtcctgagtt
caattcccagaaaccacatggtggctcacaaccatctgcaatggagtctg
atgccctcttctggtgtgtgtctgaagagagcaatggtgtactcatataa
aataaataaataaatctttaaaaaaaataaaataaatagttgacaactca
ataaaagcaaaatcaaaagacttgaacaaagaaattaacaaaatatacat
gtttaagctactgttagtaattaaattactaataaacgtgccgacctttg
aactgcattagttaccaggagaacacaaaataggcccaaagcaatagcgt
aatacactcacaagaatggttacattgaaagatgatatttcagggggaga
aacagactcttatcactgttataatatttacacttcatatgccatataaa
catagtctagtatatatatagctatgtgctaggtgggcaatctggtgcta
ttactgactattccagctatgagatcttgactggggtctctggtccctgg
gggcggcctacaggcttctctctctgctctctgtgccgc
gaattcctttctcctgaagccaaaccactaaacttgacaaatgtctacca
gggcagcccaagtttctgcaacccctcgccccccccagcactgagttctg
agtggctgcctttcctctaacctataagccccagtactaccctacctctc
gtccctcctctttcaggacttggggtagacaagggttagttcccagtcat
ttgccccacctttcctcccaggagtgaaagggaaacccagagtggaatag
ttcccctttcttgcccagaataaaaacgaaaaaacaaaaacaaaaacaaa
aaaagatggaggaaggcaaaaactatcttttggaagtctgtgggcacagc
tagcagccccacattcccaaatctggatagagaaaaagtcaggaaatgac
tctccccagggacatgagtagagtttcctctctggaaaaatggaaaatcc
ggtgttggatttactcgagaaccaatagaacacagcgagaagcattcggg
actcacttacgtcctagtatagacccagagactaagcttagagggtggag
agctctgtcacatgtaaccagagtcacaattcatgacgaggttcaacgct
tcgtttttggttcccagcaaagacattattaactaaaagacctcgcaaat
ctcagatcttcaaatgtccccagcccgaggcagcccctgcctagagctcc
cacatctagcccatcttaccctgccgctggcccaggcgacggcgggcagt
gccaccagcgcgcagagcacaatgaccaaaagcagtatcagcagtgggta
ctgttggctcaggctgtagtaagtttcgtagaagagatcttcgctgggag
gaggccggggactgaagaggcgggccatggtcttccccgccccagcccgg
agcccctgccctagggatcacagggcgctgagtcaatacctggcccggac
cacgcgctttcccatctctccgaagcactctcgggcagcactagctttca
gcagcatagggtccctgctagtgctctctcacaggctccagctgtgacag
acttcttatctgcacaaacataacgtgctagtgtctggctggagctggaa
agaggtgccgccagactcaccgctttgtccaggctcgagagtcttcttcg
actagctagtcagagacctggtggatgtcactaccttcgctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56401638_56402866
seq2: B6Ng01-168B05.g_67_1260

seq1  GAATTCCTTTCTCCTGAAGCCAAACCACTAAACTTGACAAATGTCTACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCTCCTGAAGCCAAACCACTAAACTTGACAAATGTCTACCA  50

seq1  GGGCAGCCCAAGTTTCTGCAACCCCTCGCCCCCCCCAGCACTGAGTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCCCAAGTTTCTGCAACCCCTCGCCCCCCCCAGCACTGAGTTCTG  100

seq1  AGTGGCTGCCTTTCCTCTAACCTATAAGCCCCAGTACTACCCTACCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGCCTTTCCTCTAACCTATAAGCCCCAGTACTACCCTACCTCTC  150

seq1  GTCCCTCCTCTTTCAGGACTTGGGGTAGACAAGGGTTAGTTCCCAGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCCTCTTTCAGGACTTGGGGTAGACAAGGGTTAGTTCCCAGTCAT  200

seq1  TTGCCCCACCTTTCCTCCCAGGAGTGAAAGGGAAACCCAGAGTGGAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCACCTTTCCTCCCAGGAGTGAAAGGGAAACCCAGAGTGGAATAG  250

seq1  TTCCCCTTTCTTGCCCAGAATAAAAACGAAAAAACAAAAACAAAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTTCTTGCCCAGAATAAAAACGAAAAAACAAAAACAAAAACAAA  300

seq1  AAAAGATGGAGGAAGGCAAAAACTATCTTTTGGAAGTCTGTGGGCACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGGAGGAAGGCAAAAACTATCTTTTGGAAGTCTGTGGGCACAGC  350

seq1  TAGCAGCCCCACATTCCCAAATCTGGATAGAGAAAAAGTCAGGAAATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCCCACATTCCCAAATCTGGATAGAGAAAAAGTCAGGAAATGAC  400

seq1  TCTCCCCAGGGACATGAGTAGAGTTTCCTCTCTGGAAAAATGGAAAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCAGGGACATGAGTAGAGTTTCCTCTCTGGAAAAATGGAAAATCC  450

seq1  GGTGTTGGATTTACTCGAGAACCAATAGAACACAGCGAGAAGCATTCGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGGATTTACTCGAGAACCAATAGAACACAGCGAGAAGCATTCGGG  500

seq1  ACTCACTTACGTCCTAGTATAGACCCAGAGACTAAGCTTAGAGGGTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTACGTCCTAGTATAGACCCAGAGACTAAGCTTAGAGGGTGGAG  550

seq1  AGCTCTGTCACATGTAACCAGAGTCACAATTCATGACGAGGTTCAACGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTCACATGTAACCAGAGTCACAATTCATGACGAGGTTCAACGCT  600

seq1  TCGTTTTTGGTTCCCAGCAAAGACATTATTAACTAAAAGACCTCGCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTTTGGTTCCCAGCAAAGACATTATTAACTAAAAGACCTCGCAAAT  650

seq1  CTCAGATCTTCAAATGTCCCCAGCCCGAGGCAGCCCCTGCCTAGAGCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATCTTCAAATGTCCCCAGCCCGAGGCAGCCCCTGCCTAGAGCTCC  700

seq1  CACATCTAGCCCATCTTACCCTGCCGCTGGCCCAGGCGACGGCGGGCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTAGCCCATCTTACCCTGCCGCTGGCCCAGGCGACGGCGGGCAGT  750

seq1  GCCACCAGCGCGCAGAGCACAATGACCAAAAGCAGTATCAGCAGTGGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAGCGCGCAGAGCACAATGACCAAAAGCAGTATCAGCAGTGGGTA  800

seq1  CTGTTGGCTCAGGCTGTAGTAAGTTTCGTAGAAGAGATCTTCGCTGGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGCTCAGGCTGTAGTAAGTTTCGTAGAAGAGATCTTCGCTGGGAG  850

seq1  GAGGCCGGGGACTGAAGAGGCGGGCCATGGTCTTCCCCGCCCCAGCCCGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCGGGGACTGAAGAGGCGGGCCATGGTCTTCCCCGCCCCAGCCCGG  900

seq1  AGCCCCTGCCCTAGGGATCACAGGGCGCTGAGTCAATAACCTGGCCCGGA  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGCCCCTGCCCTAGGGATCACAGGGCGCTGAGTCAAT-ACCTGGCCCGGA  949

seq1  CCACCGCGCTTTCCCATCTCTCCCGAAGCCACTCTCGGGCAAGCCACTAA  1000
      ||| ||||||||||||||||| |||||| ||||||||||||   |||| |
seq2  CCA-CGCGCTTTCCCATCTCT-CCGAAG-CACTCTCGGGCA--GCACT-A  993

seq1  GCTTTCAGCAGCAATAGGGTTCCCTGCTAAGTGCTCTCTCACAGGGCTCC  1050
      |||||||||||| |||||| |||||||| |||||||||||||| |||| |
seq2  GCTTTCAGCAGC-ATAGGG-TCCCTGCT-AGTGCTCTCTCACA-GGCT-C  1038

seq1  CAGCTGTGACAGGACTTCTTTATCCTTCCCACAAACCATACCGTGCTAGT  1100
      ||||||||||| |||||| |||||     |||||| |||| |||||||||
seq2  CAGCTGTGACA-GACTTC-TTATC---TGCACAAA-CATAACGTGCTAGT  1082

seq1  GTCCTGGCTGGAGCTGAGAAGAAGGTGCCG-CAGACTCACCGCTTTGGGT  1149
      || ||||||||||||| |||  |||||||| ||||||||||||||| |  
seq2  GT-CTGGCTGGAGCTG-GAAAGAGGTGCCGCCAGACTCACCGCTTT-GTC  1129

seq1  CAAGCTCCAGAAGTTCTCTCAGCAAAGCTAGGCTCCAGGAGGGAACCTGG  1199
      || |||| || |||  |||  |   |||||| |      || | ||||||
seq2  CAGGCTCGAG-AGTCTTCTTCGACTAGCTAGTC------AGAG-ACCTGG  1171

seq1  GTGGGATGGCTACTACTCACCTTCGCTGCT  1229
         ||||| |    ||| ||||||||||||
seq2  --TGGATGTC----ACT-ACCTTCGCTGCT  1194