BAC Information

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BAC

Clone NameB6Ng01-169F18
Chromosome14 (Build37)
Map Location 104,449,042 - 104,584,425
singlet/doubletdoublet
Overlap genenone
Upstream geneIrg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169F18.bB6Ng01-169F18.g
ACCDH960361DH960362
length1,1621,102
definitionDH960361|Mus musculus domesticus DNA, BAC clone: B6Ng01-169F18, 5' end.DH960362|Mus musculus domesticus DNA, BAC clone: B6Ng01-169F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,449,042 - 104,450,206)(104,583,310 - 104,584,425)
sequence
gaattcaattttgtaacaagttctcagatgatgttggtctgagacagagc
cactttctgtataaagaaggtgataggagtaaaaaattgaactttccttt
gttccccttcatgtgcacacaatgaagtctactctcttagcaaagaagcc
tctcattgcagtgaacagaatgcaaagcctcatggctgcccacactattg
aaaataagattcagccgagggcccagctctaatcaagatctttacatcac
ttcctcaaggctcagagaacattgcggaagaggtggcagaaagaatgtaa
gagctggcagttaaagagaccggctgaaaagcatcatctaaccatggtac
aaccatgggaaccatgaactcacagccgctgtgcctactgactggctata
ggaccacccaaattgggcccacacaaaaatatgggtggggaaggggctca
gagaagccaattacttactgctgctatcttggcaaatgacagattctggg
agaaatagatatagtatctagttgcctgtccagttgtgagctcattaaac
tctaatgagtcagttccaaacttagggttgcatagagattccagattaaa
gtctggaggacacaaaacaaaataacactagtaaaaatggcaaagagatt
tgtaagggggtggagagctagctgtagggagaggataaaatgagaaagag
gtaagaatcaacaactagaataaagttggaaatataggaatctgactatt
taggtcacttaactctttcattgtctgttatttttagtttataaaagtgt
gatgaaatatttgacagtatggcagactgcatacaatgttgctagggact
gcttctaagtgcacacataaattcattaaactgactgaagcagcttttta
tcatcctgagtccacattcagctcttggtaggctggaatctacctagaga
tctctattcatccaccaagttgggaatgtgagagctgctgtgtgtgttat
gtggatagtatttgcatgatatgtccaatatcccagtggtctgagtggtc
tagctttcagtacacacagaaggcagaaaatacatcattgacctctaatg
cacgggtcagcatagctatcgaactgcaatctgaaattctcctgaagggt
gagagttatgta
gaattccagagaaagagcccttgaggagataacctccccaaataggttat
ccaatacaaaatggtcaagcctgaaatcacattcagatacaaggaacagt
aaacaggcagagagcgttgtatttatatattaagggatatttcaagagac
caagtgctaatgcatggaatgggaaagactggaaggagagaagggaaggg
gaaatgatgtaatatttaatttaaaaaatatatattaaaaaatcatgtcc
cctaactgacatgtttccttaaattttagtattgaattttagtatgtcta
cctactgcgctttttgttaacaaagaagttgtgatgtgagaaacagaccc
attttaaggaagtgactcatcacttaaaatggaacgagaagctaggtgtc
atcgtatatctcattaaccccagcacacaggagggaaaaaatggtggatc
tcagcaaatttaaggccaatgttgtccgcatagcaagttccaagccagac
aggctacatcgttctcactgaccctgacccttgactgaaataaataaggg
gttggtgctaatttaatctgccatgggtccttctggacataagtaatata
actcagaaaagttacctctctgtcctcttaaaggaggacgtaggcctcag
ctgtctgatacggatgttgattacaggattataaataaaaataaatcgag
gaaaagcacttacaacatctggtgtttgacaaattttcactactgcagtc
acaagagcatcaggggaaggctctgcaatcatgttaggagggttctctct
aaagcttctgggagaaggtagtcttgtactgagtttcaaaaaatgaggaa
gatgatccgatggcatcaggatagaagttgttagagacagaggaccagaa
gtcatctaggagaatgtatctcctaggacgagagggagctcagatacaaa
agtgacataaaaatgaaaactgtgtagtacagaaatgtaagagatattta
agaatgagattttatgtcgaagattgctgggtttaaaatcaataggcgta
agacctcaggaataggtcatggaggacattgacaatttgctacacttttt
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_104449042_104450206
seq2: B6Ng01-169F18.b_46_1207

seq1  GAATTCAATTTTGTAACAAGTTCTCAGATGATGTTGGTCTGAGACAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTTGTAACAAGTTCTCAGATGATGTTGGTCTGAGACAGAGC  50

seq1  CACTTTCTGTATAAAGAAGGTGATAGGAGTAAAAAATTGAACTTTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTGTATAAAGAAGGTGATAGGAGTAAAAAATTGAACTTTCCTTT  100

seq1  GTTCCCCTTCATGTGCACACAATGAAGTCTACTCTCTTAGCAAAGAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCTTCATGTGCACACAATGAAGTCTACTCTCTTAGCAAAGAAGCC  150

seq1  TCTCATTGCAGTGAACAGAATGCAAAGCCTCATGGCTGCCCACACTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTGCAGTGAACAGAATGCAAAGCCTCATGGCTGCCCACACTATTG  200

seq1  AAAATAAGATTCAGCCGAGGGCCCAGCTCTAATCAAGATCTTTACATCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGATTCAGCCGAGGGCCCAGCTCTAATCAAGATCTTTACATCAC  250

seq1  TTCCTCAAGGCTCAGAGAACATTGCGGAAGAGGTGGCAGAAAGAATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAGGCTCAGAGAACATTGCGGAAGAGGTGGCAGAAAGAATGTAA  300

seq1  GAGCTGGCAGTTAAAGAGACCGGCTGAAAAGCATCATCTAACCATGGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGCAGTTAAAGAGACCGGCTGAAAAGCATCATCTAACCATGGTAC  350

seq1  AACCATGGGAACCATGAACTCACAGCCGCTGTGCCTACTGACTGGCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGGGAACCATGAACTCACAGCCGCTGTGCCTACTGACTGGCTATA  400

seq1  GGACCACCCAAATTGGGCCCACACAAAAATATGGGTGGGGAAGGGGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACCCAAATTGGGCCCACACAAAAATATGGGTGGGGAAGGGGCTCA  450

seq1  GAGAAGCCAATTACTTACTGCTGCTATCTTGGCAAATGACAGATTCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCAATTACTTACTGCTGCTATCTTGGCAAATGACAGATTCTGGG  500

seq1  AGAAATAGATATAGTATCTAGTTGCCTGTCCAGTTGTGAGCTCATTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGATATAGTATCTAGTTGCCTGTCCAGTTGTGAGCTCATTAAAC  550

seq1  TCTAATGAGTCAGTTCCAAACTTAGGGTTGCATAGAGATTCCAGATTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGAGTCAGTTCCAAACTTAGGGTTGCATAGAGATTCCAGATTAAA  600

seq1  GTCTGGAGGACACAAAACAAAATAACACTAGTAAAAATGGCAAAGAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGGACACAAAACAAAATAACACTAGTAAAAATGGCAAAGAGATT  650

seq1  TGTAAGGGGGTGGAGAGCTAGCTGTAGGGAGAGGATAAAATGAGAAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGGGGTGGAGAGCTAGCTGTAGGGAGAGGATAAAATGAGAAAGAG  700

seq1  GTAAGAATCAACAACTAGAATAAAGTTGGAAATATAGGAATCTGACTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATCAACAACTAGAATAAAGTTGGAAATATAGGAATCTGACTATT  750

seq1  TAGGTCACTTAACTCTTTCATTGTCTGTTATTTTTAGTTTATAAAAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCACTTAACTCTTTCATTGTCTGTTATTTTTAGTTTATAAAAGTGT  800

seq1  GATGAAATATTTGACAGTATGGCAGACTGCATACAATGTTGCTAGGGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAATATTTGACAGTATGGCAGACTGCATACAATGTTGCTAGGGACT  850

seq1  GCTTCTAAGTGCACACATAAATTCATTAAACTGACTGAAGCAGCTTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAAGTGCACACATAAATTCATTAAACTGACTGAAGCAGCTTTTTA  900

seq1  TCATCCTGAGTCCACATTCAGGCTCTTGGTAGGCTGGAATCTACCTAGAG  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCATCCTGAGTCCACATTCA-GCTCTTGGTAGGCTGGAATCTACCTAGAG  949

seq1  ATCTCTATTCATCCACCAAGTTGGGAATGTGAGAGGCTGGCTGTGTTGTG  1000
      |||||||||||||||||||||||||||||||||| ||| |||||| ||||
seq2  ATCTCTATTCATCCACCAAGTTGGGAATGTGAGA-GCT-GCTGTG-TGTG  996

seq1  TTATGTGGATAGTATTTGCATGATATGTTCCATATCCCCAGTGGTCTGAG  1050
      |||||||||||||||||||||||||||| | |||| ||||||||||||||
seq2  TTATGTGGATAGTATTTGCATGATATGTCCAATAT-CCCAGTGGTCTGAG  1045

seq1  TGGTCTAGGCTTTCAGTACACACAGAAGGGCAGAAAATACATCATTGA-C  1099
      ||||||| ||||||||||||||||||| |||||||||||||||||||| |
seq2  TGGTCTA-GCTTTCAGTACACACAGAA-GGCAGAAAATACATCATTGACC  1093

seq1  TCTATTGCAC-GGTCAGCATAAGCTACCGACCTGCAATCTG-ACTTCT-C  1146
      |||| ||||| ||||||||| ||||| ||| |||||||||| | |||| |
seq2  TCTAATGCACGGGTCAGCAT-AGCTATCGAACTGCAATCTGAAATTCTCC  1142

seq1  TGAAGGTTGAG-GTTATGTA  1165
      |||||| |||| ||||||||
seq2  TGAAGGGTGAGAGTTATGTA  1162

seq1: chr14_104583310_104584425
seq2: B6Ng01-169F18.g_67_1168 (reverse)

seq1  TTAAAAATGTTAGCAAAATCGTCAATGTCCTCCATGACCTA-TCCTGAGG  49
      |||||||   |||| |||| ||||||||||||||||||||| ||||||||
seq2  TTAAAAAGTGTAGC-AAATTGTCAATGTCCTCCATGACCTATTCCTGAGG  49

seq1  TC-TACGCCTATTGATTTTTAAAACCCAGCAATTCTCGACATAAAATCTA  98
      || ||||||||||||||||  ||||||||||||  |||||||||||||| 
seq2  TCTTACGCCTATTGATTTT--AAACCCAGCAATCTTCGACATAAAATCT-  96

seq1  CATTCTTTAAATATCTCTTACATTTTCTTGTACATAACACAGTTTTTCAT  148
      ||||| |||||||||||||||||||   |||||   |||||| |||||||
seq2  CATTC-TTAAATATCTCTTACATTT--CTGTAC--TACACAG-TTTTCAT  140

seq1  TTTTATGTCACTTTTTGTTATCTTGGGCTCCCCTCTCGTTCCTAGGAGAT  198
      |||||||||||||||   |||| || ||| |||||||| |||||||||||
seq2  TTTTATGTCACTTTT--GTATC-TGAGCT-CCCTCTCG-TCCTAGGAGAT  185

seq1  ACATTCTCCTAGATGACTTCCTGGTCCTCTGTCTCTTACACCTTCTATCC  248
      ||||||||||||||||||| |||||||||||||||| ||| |||||||||
seq2  ACATTCTCCTAGATGACTT-CTGGTCCTCTGTCTCTAACAACTTCTATCC  234

seq1  TGATGCCATCGGATCATCTTCCTCATTTTTTGAAACTCAGTACAAGACTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCATCGGATCATCTTCCTCATTTTTTGAAACTCAGTACAAGACTA  284

seq1  CCTTCTCCCAGAAGCTTTAGAGAGAACCCTCCTAACATGATTGCAGGGCC  348
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTTCTCCCAGAAGCTTTAGAGAGAACCCTCCTAACATGATTGCAGAGCC  334

seq1  TTCCCCTGATGCTCTTGTGACTGCAGTAGTGAAAATTTGTCAAACACCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGATGCTCTTGTGACTGCAGTAGTGAAAATTTGTCAAACACCAG  384

seq1  ATGTTGTAAGTGCTTTTCCTCGATTTATTTTTATTTATAATCCTGTAATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTAAGTGCTTTTCCTCGATTTATTTTTATTTATAATCCTGTAATC  434

seq1  AACATCCGTATCAGACAGCTGAGGCCTACGTCCTCCTTTAAGAGGACAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCGTATCAGACAGCTGAGGCCTACGTCCTCCTTTAAGAGGACAGA  484

seq1  GAGGTAACTTTTCTGAGTTATATTACTTATGTCCAGAAGGACCCATGGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAACTTTTCTGAGTTATATTACTTATGTCCAGAAGGACCCATGGCA  534

seq1  GATTAAATTAGCACCAACCCCTTATTTATTTCAGTCAAGGGTCAGGGTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAATTAGCACCAACCCCTTATTTATTTCAGTCAAGGGTCAGGGTCA  584

seq1  GTGAGAACGATGTAGCCTGTCTGGCTTGGAACTTGCTATGCGGACAACAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACGATGTAGCCTGTCTGGCTTGGAACTTGCTATGCGGACAACAT  634

seq1  TGGCCTTAAATTTGCTGAGATCCACCATTTTTTCCCTCCTGTGTGCTGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTAAATTTGCTGAGATCCACCATTTTTTCCCTCCTGTGTGCTGGG  684

seq1  GTTAATGAGATATACGATGACACCTAGCTTCTCGTTCCATTTTAAGTGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGAGATATACGATGACACCTAGCTTCTCGTTCCATTTTAAGTGAT  734

seq1  GAGTCACTTCCTTAAAATGGGTCTGTTTCTCACATCACAACTTCTTTGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACTTCCTTAAAATGGGTCTGTTTCTCACATCACAACTTCTTTGTT  784

seq1  AACAAAAAGCGCAGTAGGTAGACATACTAAAATTCAATACTAAAATTTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAGCGCAGTAGGTAGACATACTAAAATTCAATACTAAAATTTAA  834

seq1  GGAAACATGTCAGTTAGGGGACATGATTTTTTAATATATATTTTTTAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATGTCAGTTAGGGGACATGATTTTTTAATATATATTTTTTAAAT  884

seq1  TAAATATTACATCATTTCCCCTTCCCTTCTCTCCTTCCAGTCTTTCCCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTACATCATTTCCCCTTCCCTTCTCTCCTTCCAGTCTTTCCCAT  934

seq1  TCCATGCATTAGCACTTGGTCTCTTGAAATATCCCTTAATATATAAATAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCATTAGCACTTGGTCTCTTGAAATATCCCTTAATATATAAATAC  984

seq1  AACGCTCTCTGCCTGTTTACTGTTCCTTGTATCTGAATGTGATTTCAGGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTCTCTGCCTGTTTACTGTTCCTTGTATCTGAATGTGATTTCAGGC  1034

seq1  TTGACCATTTTGTATTGGATAACCTATTTGGGGAGGTTATCTCCTCAAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCATTTTGTATTGGATAACCTATTTGGGGAGGTTATCTCCTCAAGG  1084

seq1  GCTCTTTCTCTGGAATTC  1116
      ||||||||||||||||||
seq2  GCTCTTTCTCTGGAATTC  1102