BAC Information

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BAC

Clone NameB6Ng01-169J17
Chromosome14 (Build37)
Map Location 72,334,605 - 72,459,537
singlet/doubletdoublet
Overlap genenone
Upstream geneGfra2, LOC100043132, LOC100043136, LOC668477
Downstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169J17.bB6Ng01-169J17.g
ACCDH960538DH960539
length1,1251,084
definitionDH960538|Mus musculus domesticus DNA, BAC clone: B6Ng01-169J17, 5' end.DH960539|Mus musculus domesticus DNA, BAC clone: B6Ng01-169J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,334,605 - 72,335,789)(72,458,428 - 72,459,537)
sequence
gaattcctcctcctgcaaggagatttaagttaggtgctatctcttgagtt
actgtctaggaaacagttttcacttttacaaaacggaaagtcaagagggc
ttagggtttcctctctataatgctggatggaagcaactcttttcctggct
ttgggccagtcattcccaacccagttggctctcagcttctgtatggataa
gacagaggaaggggaaccatacttagtttgtggtatttgtaggatggcca
aatgagaaagcactccgacagcttagctctcttctggcttttgtaggttc
attttcctactgaacagacgcactgaggagtttctgtgccctaattctgg
tgtcggtggaagcatattcccttttctaagcactgcatgcacctcggcga
tacttctaagaagtccctagcaagaatgccattgttttaatggattacaa
gaaaaggatcattatatccccaaagtgcaagccttagaggcattatcagc
agtacaagaggcaagtgggagacagtccggatactccacccccaaaatcg
cccaatctatctctcagccaagtgacagcaggtccctgtctctaccctca
cccagctaacatggtgctatgacacagtttgacaaagcccatccccgcct
ccatcttgatcagtctttcccaggtctgtacatctcttctgccctctgca
gcttacctaacattgggcccgggtcaggggctcactggagcatcttgact
gacttccacttttctccttccctctccctctggagaacagaagttccttc
aagcagacaagcaatttccagtgtgtttttcacattgagctctgtgggta
caacacacactgctgctgtaggggggcaggcatctcccataatagacctt
atttaagttgattaccacagagatcatggctacacatgacgcagaatttc
tacctttcttacacttcagaagcaaagtggtaaatttcattttattcttt
aaaatttttttttaaaaagcatttttttaaagcagctcttgtgcccagca
gcgcctctccttgagaatctcattcgatagctatcaggttggcagttcag
tcaagcttatttcagcaggctggtg
gaattctttagaactcagaggatggatggaaacagtggagtcagtctgtg
tcccctgggagatggtcagtagagaaataacctaaaatggaggttattag
gtcagtgggaggactgtaagccaagaacgacaactactgaaagataaagg
aagagaaccagtactccacagtgggaacctggatgctagagagtgacagg
acacagttaacaaggaactcccatgtggttctgtcagctgaggcttcctg
gctcagaactcagggctcagattatttcatactggaagatatcattttct
ctataagcattcatatcccactatgcagttcaaatcactttgttccaatg
caatgctattcagtgcaatccagtctgctgcattagggatgaattaaata
actactatatgtctactgctatattagttactgtgatgattataaaaaaa
ggattatacaaaatatcaccatcctcaaggagactgtgagcataatcctg
caacagaagtaactacttactcagtattctaccaaaatcatcggacaaag
taagagaactggattgcaagtcagctcagggttttgcttccagatcagca
acttagtgattaagcctttaatttctttttacctcactatcatcttcttc
ttcagtaaaatgaagtattataatagatgaatggttctcaagcttactgt
atttaatatccccttttataacaaataattcgcaatgcctcatttaccaa
aatgaaatttgcagatataattcttatgttcataataaaaatcagtataa
tgacctaggtataatgcaagcaagaaataaaagcaagtttttaaaataaa
taataagggcttcgatctgtaaatgttcggataaagcagatagaagatgt
aatgaacagagtagatggagactgcactgcttgtaatggattcatttgca
tttaaaggagatgccagcagtcttttagagtgtatactacacaatatcct
aaactaaaatacagaaaaatactggaacagctgggattatttgtaataaa
gcaaatagaatacctgcttgaagcagagcatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_72334605_72335789
seq2: B6Ng01-169J17.b_46_1170

seq1  GAATTCCTCCTCCTGCAAGGAGATTTAAGTTAGGTGCTATCTCTTGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTCCTGCAAGGAGATTTAAGTTAGGTGCTATCTCTTGAGTT  50

seq1  ACTGTCTAGGAAACAGTTTTCACTTTTACAAAACGGAAAGTCAAGAGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTAGGAAACAGTTTTCACTTTTACAAAACGGAAAGTCAAGAGGGC  100

seq1  TTAGGGTTTCCTCTCTATAATGCTGGATGGAAGCAACTCTTTTCCTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTTTCCTCTCTATAATGCTGGATGGAAGCAACTCTTTTCCTGGCT  150

seq1  TTGGGCCAGTCATTCCCAACCCAGTTGGCTCTCAGCTTCTGTATGGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCAGTCATTCCCAACCCAGTTGGCTCTCAGCTTCTGTATGGATAA  200

seq1  GACAGAGGAAGGGGAACCATACTTAGTTTGTGGTATTTGTAGGATGGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGAAGGGGAACCATACTTAGTTTGTGGTATTTGTAGGATGGCCA  250

seq1  AATGAGAAAGCACTCCGACAGCTTAGCTCTCTTCTGGCTTTTGTAGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAAGCACTCCGACAGCTTAGCTCTCTTCTGGCTTTTGTAGGTTC  300

seq1  ATTTTCCTACTGAACAGACGCACTGAGGAGTTTCTGTGCCCTAATTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTACTGAACAGACGCACTGAGGAGTTTCTGTGCCCTAATTCTGG  350

seq1  TGTCGGTGGAAGCATATTCCCTTTTCTAAGCACTGCATGCACCTCGGCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGTGGAAGCATATTCCCTTTTCTAAGCACTGCATGCACCTCGGCGA  400

seq1  TACTTCTAAGAAGTCCCTAGCAAGAATGCCATTGTTTTAATGGATTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTAAGAAGTCCCTAGCAAGAATGCCATTGTTTTAATGGATTACAA  450

seq1  GAAAAGGATCATTATATCCCCAAAGTGCAAGCCTTAGAGGCATTATCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGATCATTATATCCCCAAAGTGCAAGCCTTAGAGGCATTATCAGC  500

seq1  AGTACAAGAGGCAAGTGGGAGACAGTCCGGATACTCCACCCCCAAAATCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAGAGGCAAGTGGGAGACAGTCCGGATACTCCACCCCCAAAATCG  550

seq1  CCCAATCTATCTCTCAGCCAAGTGACAGCAGGTCCCTGTCTCTACCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCTATCTCTCAGCCAAGTGACAGCAGGTCCCTGTCTCTACCCTCA  600

seq1  CCCAGCTAACATGGTGCTATGACACAGTTTGACAAAGCCCATCCCCGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTAACATGGTGCTATGACACAGTTTGACAAAGCCCATCCCCGCCT  650

seq1  CCATCTTGATCAGTCTTTCCCAGGTCTGTACATCTCTTCTGCCCTCTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTGATCAGTCTTTCCCAGGTCTGTACATCTCTTCTGCCCTCTGCA  700

seq1  GCTTACCTAACATTGGGCCCGGGTCAGGGGCTCACTGGAGCATCTTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCTAACATTGGGCCCGGGTCAGGGGCTCACTGGAGCATCTTGACT  750

seq1  GACTTCCACTTTTCTCCTTCCCTCTCCCTCTGGAGAACAGAAGTTCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCACTTTTCTCCTTCCCTCTCCCTCTGGAGAACAGAAGTTCCTTC  800

seq1  AAGCAGACAAGCAATTTCCAGTGTGTTTTTCACATTGAGCTCTGTGGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACAAGCAATTTCCAGTGTGTTTTTCACATTGAGCTCTGTGGGTA  850

seq1  CAACACACACTGCTGCTGTAGGGGGGCAGGCATCTCCCATAATAGACCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACACACTGCTGCTGTAGGGGGGCAGGCATCTCCCATAATAGACCTT  900

seq1  ATTTAAGTTGATTACCACAGGAGATCATGGCTACACATGACGCAGAATTT  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTTAAGTTGATTACCACA-GAGATCATGGCTACACATGACGCAGAATTT  949

seq1  CTACCTTCCTTACACTTCAGAAGGCAAAGTGGTAAATTTCATTTTTATTT  1000
      ||||||| |||||||||||||| |||||||||||||||||| ||||||| 
seq2  CTACCTTTCTTACACTTCAGAA-GCAAAGTGGTAAATTTCA-TTTTATT-  996

seq1  CCTTTAAAAATTTTTTTTTAAAAAAGCATTTTTTTTAAAGCAGCTCCTTT  1050
       ||||||||  |||||||| |||||||| |||||||||||||||||  ||
seq2  -CTTTAAAA--TTTTTTTTTAAAAAGCA-TTTTTTTAAAGCAGCTC--TT  1040

seq1  GTGCACAGCAGCGCCTC-CCCTGAGATTCTCATTTCAGATTAGCCTATCA  1099
      |||| |||||||||||| || ||||| |||||||  |   ||| ||||||
seq2  GTGCCCAGCAGCGCCTCTCCTTGAGAATCTCATTCGA---TAG-CTATCA  1086

seq1  GGTGTGCAGTTCAGTCCAAGCTTATTTCAGCCAGGGCTGGTTTGATATCC  1149
      |||  |||||||||| |||||||||||||||   |||||||         
seq2  GGTTGGCAGTTCAGT-CAAGCTTATTTCAGC--AGGCTGGTG--------  1125

seq1  CTGCCTTTCACAAGATCTTCCCCCCAGAGGCTGGTG  1185
                                          
seq2  ------------------------------------  1125

seq1: chr14_72458428_72459537
seq2: B6Ng01-169J17.g_64_1147 (reverse)

seq1  CACATTGCTCTTGCTTCAAGCAAAGTTATTTCCTTATTTTGCTTTTTATA  50
      |||| ||||| ||||||||||  || ||||  ||   |||||||| |   
seq2  CACA-TGCTC-TGCTTCAAGC--AGGTATT--CT--ATTTGCTTTAT---  39

seq1  TACAAATAATCCCAGCCTGTTTCCAGTTATTTTTCCTGTATTTTAGTTTT  100
      ||||||||||||||| ||| |||||| ||||||| ||||||||||| |||
seq2  TACAAATAATCCCAG-CTG-TTCCAG-TATTTTT-CTGTATTTTAG-TTT  84

seq1  AGGATATTTGTGTAGGTATACACTTCTTAAAAAGACTGCTTGGCATCTTC  150
      |||||| ||||||| |||||||| |||  |||||||||| ||||||| ||
seq2  AGGATA-TTGTGTA-GTATACAC-TCT--AAAAGACTGC-TGGCATC-TC  127

seq1  CTTTAAATGCAAATGAATCCATTACAAGCAGTTGCAGTTCTCCATCTACT  200
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  CTTTAAATGCAAATGAATCCATTACAAGCAG-TGCAG-TCTCCATCTACT  175

seq1  CTGTTCATTACATCTTCTATTCTGCTTTATCCGAACATTTACAGATCGAA  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGTTCATTACATCTTCTA-TCTGCTTTATCCGAACATTTACAGATCGAA  224

seq1  GCCCTTATTATTTATTTTAAAAACTTGCTTTTATTTCTTGCTTGCATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTATTATTTATTTTAAAAACTTGCTTTTATTTCTTGCTTGCATTAT  274

seq1  ACCTAGGTCATTATACTGATTTTTATTATGAACATAAGAATTATATCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGTCATTATACTGATTTTTATTATGAACATAAGAATTATATCTGC  324

seq1  AAATTTCATTTTGGTAAATGAGGCATTGCGAATTATTTGTTATAAAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCATTTTGGTAAATGAGGCATTGCGAATTATTTGTTATAAAAGGG  374

seq1  GATATTAAATACAGTAAGCTTGAGAACCATTCATCTATTATAATACTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAAATACAGTAAGCTTGAGAACCATTCATCTATTATAATACTTCA  424

seq1  TTTTACTGAAGAAGAAGATGATAGTGAGGTAAAAAGAAATTAAAGGCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGAAGAAGAAGATGATAGTGAGGTAAAAAGAAATTAAAGGCTTA  474

seq1  ATCACTAAGTTGCTGATCTGGAAGCAAAACCCTGAGCTGACTTGCAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTAAGTTGCTGATCTGGAAGCAAAACCCTGAGCTGACTTGCAATCC  524

seq1  AGTTCTCTTACTTTGTCCGATGATTTTGGTAGAATACTGAGTAAGTAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCTTACTTTGTCCGATGATTTTGGTAGAATACTGAGTAAGTAGTT  574

seq1  ACTTCTGTTGCAGGATTATGCTCACAGTCTCCTTGAGGATGGTGATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTTGCAGGATTATGCTCACAGTCTCCTTGAGGATGGTGATATTT  624

seq1  TGTATAATCCTTTTTTTATAATCATCACAGTAACTAATATAGCAGTAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATCCTTTTTTTATAATCATCACAGTAACTAATATAGCAGTAGAC  674

seq1  ATATAGTAGTTATTTAATTCATCCCTAATGCAGCAGACTGGATTGCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTAGTTATTTAATTCATCCCTAATGCAGCAGACTGGATTGCACTG  724

seq1  AATAGCATTGCATTGGAACAAAGTGATTTGAACTGCATAGTGGGATATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATTGCATTGGAACAAAGTGATTTGAACTGCATAGTGGGATATGA  774

seq1  ATGCTTATAGAGAAAATGATATCTTCCAGTATGAAATAATCTGAGCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTATAGAGAAAATGATATCTTCCAGTATGAAATAATCTGAGCCCTG  824

seq1  AGTTCTGAGCCAGGAAGCCTCAGCTGACAGAACCACATGGGAGTTCCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAGCCAGGAAGCCTCAGCTGACAGAACCACATGGGAGTTCCTTG  874

seq1  TTAACTGTGTCCTGTCACTCTCTAGCATCCAGGTTCCCACTGTGGAGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTGTCCTGTCACTCTCTAGCATCCAGGTTCCCACTGTGGAGTAC  924

seq1  TGGTTCTCTTCCTTTATCTTTCAGTAGTTGTCGTTCTTGGCTTACAGTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCTTCCTTTATCTTTCAGTAGTTGTCGTTCTTGGCTTACAGTCC  974

seq1  TCCCACTGACCTAATAACCTCCATTTTAGGTTATTTCTCTACTGACCATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTGACCTAATAACCTCCATTTTAGGTTATTTCTCTACTGACCATC  1024

seq1  TCCCAGGGGACACAGACTGACTCCACTGTTTCCATCCATCCTCTGAGTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGGACACAGACTGACTCCACTGTTTCCATCCATCCTCTGAGTTC  1074

seq1  TAAAGAATTC  1110
      ||||||||||
seq2  TAAAGAATTC  1084