BAC Information

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BAC

Clone NameB6Ng01-169L03
Chromosome14 (Build37)5 (Build37)
Map Location 113,080,451 - 113,080,66286,079,267 - 86,080,474
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlitrk5, LOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169L03.bB6Ng01-169L03.g
ACCDH960605DH960606
length1,0321,177
definitionDH960605|Mus musculus domesticus DNA, BAC clone: B6Ng01-169L03, 5' end.DH960606|Mus musculus domesticus DNA, BAC clone: B6Ng01-169L03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(113,080,451 - 113,080,662)(86,079,267 - 86,080,474)
sequence
gaattcaatgattggttagccagtaaccactagggagccttctctatcac
cgccatgtgttggagttacagacgcatgcaaacatgttcagcttttacag
atagggggagccacactccagtcctcatgcttgtacagcaaacactgact
cagccatttcccacaatcccatttgttttcacacttacatgtttgtttct
ctttattcttaacgaatcttaatagagaattacaatattatcttttttgg
ctctttttatattttattttcttttcattatttttttattgtttgatttt
taaattatgtattttatatcctgaattttatgcttgactaattttgtttt
agttattccattcactgtttactttccttagtcccttatttttgggttta
acaggacagtttgtacatacacacacacacacacacacacacacacacac
acacacacattcatatatatatatatgatcatacgccccacacccctgtt
ttatgttccttctactccctccaatcctctgatgctcttttctcctaata
tgtgcttctcctacttgcatttttttcccattcaggttaattagggttga
gtacttcagtatggttaggagtttatttactgcagcgtggacaacttatc
gatggctgctccaatgaggaaaagaaactcttctaggagaaggcggatac
agttgtctcctttagggtcgagcacctaaggaccacgtactcttagtgct
ttgcctagttaggagtctccatagtaactgcagaaggagcttttacactc
aaagctgtgaggagcagatgagtctatgagtataaacatgagtatttata
aggaagctggctctacgtccatttatccaaacaacagttgtagattcttc
cctagggatatggccgcagactttgctatttcttcccctccttacacatc
tttacgttcctgggtctcaactttctaatgctgcaaccctgtaatacagt
cactcatgtgtgtgacccccagcataaaataa
gaattcaatgtagagtgctccctttcactttgtactttccttctttcttt
gggtacaagtcagaaaacatcagagaaaatatgagaaaaacacactaaac
cttgtgagccaaaagaataaatgtaattttaagaaaaactttttttaaaa
ggctgaaaagaaaactaatgagaaataccacctgttattctatctcacag
aataaacacacttgagattttattgtgtcttttctcagatagcatgacct
acacagaggcaaagctgctgctttatcgtttaataatacacgtttttctt
ttctatgatgccaaacaccatgggatgcattatctttaatgattgtccaa
tcgtccacaacaaaagaccaacgtacaactcattcaacaagaatcctgtg
attatttcctatgttctgagcgccaaacacttaaaaatagaacaaaagag
agacagaatttccactaatggtttccaatagtttaaaacaacaatctctt
ccattttcttcctgtagcaaaccacagagcaacaaatgtcattggacaga
aagtttgggaaacaatttaatgttaattttcctgacagtcctggaaataa
aagaaaatgtgtaaatgctaaaaagactcctaagacacacaacagtctaa
actaatgacaatcttagttcattttacctaaattaacaatatatatatta
gcttgccatgttaatttattgattaattgatgaatatttgttttaactta
cttgtattttcagactctaatgtcatcacattgatgaaacaggaatgtgt
atttcaatcatgctgtcaagtaggtcagtgtcctactatccaagattatt
gttaactatcctcctacattgttctagaaagtcagaccaggagtaattag
atgataatagtttgaccaaattatcaatgagatgaccttcaatgaaagga
atagtctaggaatgggaaattgaaaatagaatatacattttatgattgaa
actgaagaaatatgttgagaggaccacttcatacaaaaaaacaaaattga
aacaaacaactatctagagcaatgctttgactatagtaaaaatgtgtaca
atgcaactggccttagcaaaaaatgatttgagaacaacagtgacacccta
aggaatctgacttgacctagaggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_113080451_113080662
seq2: B6Ng01-169L03.b_276_504

seq1  ACAATATTATCTTT--------TTATTAATTTTAATTTTC--TAGATAA-  39
      ||||||||||||||        || |||  ||| ||||||  |  || | 
seq2  ACAATATTATCTTTTTTGGCTCTTTTTATATTTTATTTTCTTTTCATTAT  50

seq1  -------------GAATAT--AATTAT-AATTTTCCATCCTTGCCTTTCC  73
                   || | |  ||||||  |||||  |||||    |||  
seq2  TTTTTTATTGTTTGATTTTTAAATTATGTATTTTATATCCTGAATTTTAT  100

seq1  TCCTG-CCAATTTTTCTTCTGTACCCTCTGGCTCTATTTAAAGTT--CAT  120
       | || | ||||||  ||  ||    | |   || ||| |  |||  | |
seq2  GCTTGACTAATTTTGTTTTAGT----TAT---TCCATTCACTGTTTACTT  143

seq1  TGATTAGTTTTTCATTAATTGTTAAAACCAACAAACACACATACACACAC  170
      |  |||||   | |||  | | |  |||     |  |||  |    ||| 
seq2  TCCTTAGTCCCTTATTTTTGGGTTTAAC-----AGGACA-GTTTGTACAT  187

seq1  AAACACACACACACACACACACACACACACACACACACACAT  212
      | ||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACAT  229

seq1: chr5_86079267_86080474
seq2: B6Ng01-169L03.g_69_1245

seq1  GAATTCAATGTAGAGTGCTCCCTTTCACTTTGTACTTTCCTTCTTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTAGAGTGCTCCCTTTCACTTTGTACTTTCCTTCTTTCTTT  50

seq1  GGGTACAAGTCAGAAAACATCAGAGAAAATATGAGAAAAACACACTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACAAGTCAGAAAACATCAGAGAAAATATGAGAAAAACACACTAAAC  100

seq1  CTTGTGAGCCAAAAGAATAAATGTAATTTTAAGAAAAACTTTTTTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAGCCAAAAGAATAAATGTAATTTTAAGAAAAACTTTTTTTAAAA  150

seq1  GGCTGAAAAGAAAACTAATGAGAAATACCACCTGTTATTCTATCTCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAAAGAAAACTAATGAGAAATACCACCTGTTATTCTATCTCACAG  200

seq1  AATAAACACACTTGAGATTTTATTGTGTCTTTTCTCAGATAGCATGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACACACTTGAGATTTTATTGTGTCTTTTCTCAGATAGCATGACCT  250

seq1  ACACAGAGGCAAAGCTGCTGCTTTATCGTTTAATAATACACGTTTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGGCAAAGCTGCTGCTTTATCGTTTAATAATACACGTTTTTCTT  300

seq1  TTCTATGATGCCAAACACCATGGGATGCATTATCTTTAATGATTGTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGATGCCAAACACCATGGGATGCATTATCTTTAATGATTGTCCAA  350

seq1  TCGTCCACAACAAAAGACCAACGTACAACTCATTCAACAAGAATCCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCACAACAAAAGACCAACGTACAACTCATTCAACAAGAATCCTGTG  400

seq1  ATTATTTCCTATGTTCTGAGCGCCAAACACTTAAAAATAGAACAAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCCTATGTTCTGAGCGCCAAACACTTAAAAATAGAACAAAAGAG  450

seq1  AGACAGAATTTCCACTAATGGTTTCCAATAGTTTAAAACAACAATCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAATTTCCACTAATGGTTTCCAATAGTTTAAAACAACAATCTCTT  500

seq1  CCATTTTCTTCCTGTAGCAAACCACAGAGCAACAAATGTCATTGGACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCTTCCTGTAGCAAACCACAGAGCAACAAATGTCATTGGACAGA  550

seq1  AAGTTTGGGAAACAATTTAATGTTAATTTTCCTGACAGTCCTGGAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGGGAAACAATTTAATGTTAATTTTCCTGACAGTCCTGGAAATAA  600

seq1  AAGAAAATGTGTAAATGCTAAAAAGACTCCTAAGACACACAACAGTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGTGTAAATGCTAAAAAGACTCCTAAGACACACAACAGTCTAA  650

seq1  ACTAATGACAATCTTAGTTCATTTTACCTAAATTAACAATATATATATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGACAATCTTAGTTCATTTTACCTAAATTAACAATATATATATTA  700

seq1  GCTTGCCATGTTAATTTATTGATTAATTGATGAATATTTGTTTTAACTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCATGTTAATTTATTGATTAATTGATGAATATTTGTTTTAACTTA  750

seq1  CTTGTATTTTCAGACTCTAATGTCATCACATTGATGAAACAGGAATGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTTTCAGACTCTAATGTCATCACATTGATGAAACAGGAATGTGT  800

seq1  ATTTCAATCATGCTGTCAAGTAGGTCAGTGTCCTACTATCCAAGATTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATCATGCTGTCAAGTAGGTCAGTGTCCTACTATCCAAGATTATT  850

seq1  GTTAACTATCCTCCTACATTGTTCTAGAAAGTCAGACCAGGAGTAATTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTATCCTCCTACATTGTTCTAGAAAGTCAGACCAGGAGTAATTAG  900

seq1  ATGATAATAGTTTGACCAAATTATCAATGAGATGACCTTCAATGAAAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATAGTTTGACCAAATTATCAATGAGATGACCTTCAATGAAAGGA  950

seq1  ATAGGTCTAGGAATGGGAAATTGAAAATAGAATTAATAACATTTTATGAT  1000
      ||| |||||||||||||||||||||||||||||  || ||||||||||||
seq2  ATA-GTCTAGGAATGGGAAATTGAAAATAGAAT--AT-ACATTTTATGAT  996

seq1  TGAAACTGAAGAAATATGTTGAGAAGGACCACTTCATACAAAAAAACAAA  1050
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGAAACTGAAGAAATATGTTGAG-AGGACCACTTCATACAAAAAAACAAA  1045

seq1  AATGAAACAAAACCAAACCTATCTAAGAAGCAATGCCTTTGAACTATAGT  1100
      | |||||||||  |||  |||||||   ||||||| ||||| ||||||||
seq2  ATTGAAACAAA--CAA--CTATCTA--GAGCAATG-CTTTG-ACTATAGT  1087

seq1  AAAAAATGTGTACAAATTGCACCTGGACATAGGCAAAAAAAAAAGGATTT  1150
       ||||||||||||||  |||| |||| | |||      |||||| |||||
seq2  -AAAAATGTGTACAA--TGCAACTGGCCTTAG-----CAAAAAATGATTT  1129

seq1  GAGAACAAAACCAAGTAGACACACAAAGGATACTAGACTTGACCTCAAGG  1200
      ||||||||     ||| ||||| | |||||  || ||||||||||  || 
seq2  GAGAACAA----CAGT-GACACCCTAAGGAATCT-GACTTGACCT--AG-  1170

seq1  AAGGGGTG  1208
       |||||||
seq2  -AGGGGTG  1177