BAC Information

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BAC

Clone NameB6Ng01-169P01
Chromosome14 (Build37)
Map Location 63,959,408 - 64,055,351
singlet/doubletdoublet
Overlap geneLOC432868, Blk, LOC668293, BC065085
Upstream geneRnaseh2b, Gucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059, E130113E03Rik, Ints6, LOC100042969, LOC668263, Wdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988
Downstream geneTdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169P01.bB6Ng01-169P01.g
ACCDH960783DH960784
length8871,108
definitionDH960783|Mus musculus domesticus DNA, BAC clone: B6Ng01-169P01, 5' end.DH960784|Mus musculus domesticus DNA, BAC clone: B6Ng01-169P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,959,408 - 63,960,059)(64,054,239 - 64,055,351)
sequence
gaattctgtttactaggttcttgccaggccttagaagaccttccaggaag
agcactgtgccaacctggcaatcaaagccactgcctatgactagaattta
aatctaggtcttttgcgtccaaattgaagcctttttccatgacatcaaga
ggcagaagataagtcgcttggctttgtcttaaacacacattcctgggatg
aagggaggcttaggaacagggcagggctgcaggctccatcacatcggcta
ctttcactcctcagggtcttccaggtgctcagtgagcatctccttcccat
cctggggactgatcccctgaattctaccattaaggctattgtttgtttat
ttatttatcctctttggacagctcctgtggcccaggctggcttcacactt
actatatagctagggacgatctttagcttctgatcttcctgcctctacct
tccaagaacttgggttataggtgtgtaccacctctccccagtttatatgg
tgttgggaattgaactccggcctttgtgagtcctattcaagcattccaac
tgaggcatgtgctcatttggattctccatgaagttttcctttctgtcctc
ccttcctcccttcttacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgcgagagggtccaccattttcgtctcagctccaaactttgtctctataa
ctccttccatgggtgttttgttctcagttctaagaaggggcaaagtgtcc
acactttggtcttcgttcttcttgagtttcatgtgtttccaaattgtatc
ttgtatcttgggtattctaggtttctgggttatatccactttatcagtga
gtatatattcatggtgagttcttttgtgatttggggt
gaattctccgcaccgttcttttttgaagggacgttcttttgcgttgcgtc
agggcggttgcctggcgaccgtagagctagtccgccgccagcctctcggc
gccgccgcccgcctcccattcaagccgcggcaggtcggcctcccggcacc
gctggtccgagtgcacccgggtcctaaagacccccgattctccctccccg
tgcaaggccaagcccagtcaggaactctcagcaagctccaggcgaaatca
aacccaaacttttttttcccattaagatcaaagcaaagagagttatgtcc
cgtcccgtcccgtcttactgccccctccctccaagcatggcaacgtggct
ttgccactgtcagcagttcgctgagggaatgggcagggaaagcgggctgc
actccacccaggaaagtcttgggttcctgatcccagcagcagccaccaag
tcagaccaactggcactgacctgcgcgctcgcgcgctcgcgtgccacacc
attgcagggctccagctgggtaggcatttgtgggcagctctggcttagtt
ttcaagtggggaaaactgggatgttaagaggaaagagctgtgggtagtgc
tggtgggcctgatgtgagagcctccttaaccacctgcacctcattcttgg
gaactgcagcagctgcatctgtcctaatactcttagggtcaggttctact
gccctaagttccaaccctgctccgtgagcacctagagctgttggcatctg
gagctgctagcacttagggtcacagagaacagaagctggactgacatgct
tgtagactcttaggaccatcctgactgcaggatgaggcaggggccacaca
agagaccagcttggggtgatgccagaaggtggtctctttgtcctcgacca
gctccctaaaaccctaagggtagaagggtcttccaagagaatgagtcact
tcatctctctgtctcttgagtcagttgctgtggttttaggatgctccttg
acccttcttgctggctagaggagcacctgaaggatgactctcacacccca
actacccctcccagtaaccactgtgtcgggactctggagtagactgtggg
taagagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_63959408_63960059
seq2: B6Ng01-169P01.b_41_692

seq1  GAATTCTGTTTACTAGGTTCTTGCCAGGCCTTAGAAGACCTTCCAGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTACTAGGTTCTTGCCAGGCCTTAGAAGACCTTCCAGGAAG  50

seq1  AGCACTGTGCCAACCTGGCAATCAAAGCCACTGCCTATGACTAGAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTGCCAACCTGGCAATCAAAGCCACTGCCTATGACTAGAATTTA  100

seq1  AATCTAGGTCTTTTGCGTCCAAATTGAAGCCTTTTTCCATGACATCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGGTCTTTTGCGTCCAAATTGAAGCCTTTTTCCATGACATCAAGA  150

seq1  GGCAGAAGATAAGTCGCTTGGCTTTGTCTTAAACACACATTCCTGGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGATAAGTCGCTTGGCTTTGTCTTAAACACACATTCCTGGGATG  200

seq1  AAGGGAGGCTTAGGAACAGGGCAGGGCTGCAGGCTCCATCACATCGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGGCTTAGGAACAGGGCAGGGCTGCAGGCTCCATCACATCGGCTA  250

seq1  CTTTCACTCCTCAGGGTCTTCCAGGTGCTCAGTGAGCATCTCCTTCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTCCTCAGGGTCTTCCAGGTGCTCAGTGAGCATCTCCTTCCCAT  300

seq1  CCTGGGGACTGATCCCCTGAATTCTACCATTAAGGCTATTGTTTGTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGACTGATCCCCTGAATTCTACCATTAAGGCTATTGTTTGTTTAT  350

seq1  TTATTTATCCTCTTTGGACAGCTCCTGTGGCCCAGGCTGGCTTCACACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATCCTCTTTGGACAGCTCCTGTGGCCCAGGCTGGCTTCACACTT  400

seq1  ACTATATAGCTAGGGACGATCTTTAGCTTCTGATCTTCCTGCCTCTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATAGCTAGGGACGATCTTTAGCTTCTGATCTTCCTGCCTCTACCT  450

seq1  TCCAAGAACTTGGGTTATAGGTGTGTACCACCTCTCCCCAGTTTATATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAACTTGGGTTATAGGTGTGTACCACCTCTCCCCAGTTTATATGG  500

seq1  TGTTGGGAATTGAACTCCGGCCTTTGTGAGTCCTATTCAAGCATTCCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGAATTGAACTCCGGCCTTTGTGAGTCCTATTCAAGCATTCCAAC  550

seq1  TGAGGCATGTGCTCATTTGGATTCTCCATGAAGTTTTCCTTTCTGTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATGTGCTCATTTGGATTCTCCATGAAGTTTTCCTTTCTGTCCTC  600

seq1  CCTTCCTCCCTTCTTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCCCTTCTTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  650

seq1  TG  652
      ||
seq2  TG  652

seq1: chr14_64054239_64055351
seq2: B6Ng01-169P01.g_65_1172 (reverse)

seq1  CACTCCTACCC-CAGTCTAC-CCAGAGTCCAGACACAGTGGTTCATGGGG  48
      ||||| ||||| |||||||| ||||||||| |||||||||||| |  |||
seq2  CACTCTTACCCACAGTCTACTCCAGAGTCCCGACACAGTGGTT-ACTGGG  49

seq1  AGGGGTAGGTTGGGTGTTGAG-GTCACACCTCAGGTGCTCCTCTAGCCAG  97
      |||||||| | ||||| |||| ||||  | ||||||||||||||||||||
seq2  AGGGGTAGTTGGGGTG-TGAGAGTCATCCTTCAGGTGCTCCTCTAGCCAG  98

seq1  CAAGAAGGGTCAAGGAGCATCCTTAAAACCACAGCAACTGACTCAAGAGA  147
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAAGAAGGGTCAAGGAGCATCC-TAAAACCACAGCAACTGACTCAAGAGA  147

seq1  CAGAGGAGATGAAGGTGACTCATTCTCTTGGAAAGACCCTTCTACCCTTA  197
      |||| |||||||| ||||||||||||||||| ||||||||||||||||||
seq2  CAGA-GAGATGAA-GTGACTCATTCTCTTGG-AAGACCCTTCTACCCTTA  194

seq1  GGGTTTTAGGGAGCTGGTCGAGGACAAAGAGACCACCTTCTGGCATCACC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTAGGGAGCTGGTCGAGGACAAAGAGACCACCTTCTGGCATCACC  244

seq1  CCAAGCTGGTCTCTTGTGTGGGCCCCTTGCCTCATCCTGCAGTCAGGATG  297
      |||||||||||||||||||||  ||| |||||||||||||||||||||||
seq2  CCAAGCTGGTCTCTTGTGTGG--CCCCTGCCTCATCCTGCAGTCAGGATG  292

seq1  GTCCTAAGAGTCTACAAGCATGTCAGTCCAGCTTCTGTTCTCTGTGACCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAGAGTCTACAAGCATGTCAGTCCAGCTTCTGTTCTCTGTGACCC  342

seq1  TAAGTGCTAGCAGCTCCAGATGCCAACAGCTCTAGGTGCTCACGGAGCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCTAGCAGCTCCAGATGCCAACAGCTCTAGGTGCTCACGGAGCAG  392

seq1  GGTTGGAACTTAGGGCAGTAGAACCTGACCCTAAGAGTATTAGGACAGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAACTTAGGGCAGTAGAACCTGACCCTAAGAGTATTAGGACAGAT  442

seq1  GCAGCTGCTGCAGTTCCCAAGAATGAGGTGCAGGTGGTTAAGGAGGCTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGCTGCAGTTCCCAAGAATGAGGTGCAGGTGGTTAAGGAGGCTCT  492

seq1  CACATCAGGCCCACCAGCACTACCCACAGCTCTTTCCTCTTAACATCCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGGCCCACCAGCACTACCCACAGCTCTTTCCTCTTAACATCCCA  542

seq1  GTTTTCCCCACTTGAAAACTAAGCCAGAGCTGCCCACAAATGCCTACCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCCCACTTGAAAACTAAGCCAGAGCTGCCCACAAATGCCTACCCA  592

seq1  GCTGGAGCCCTGCAATGGTGTGGCACGCGAGCGCGCGAGCGCGCAGGTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGCCCTGCAATGGTGTGGCACGCGAGCGCGCGAGCGCGCAGGTCA  642

seq1  GTGCCAGTTGGTCTGACTTGGTGGCTGCTGCTGGGATCAGGAACCCAAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGTTGGTCTGACTTGGTGGCTGCTGCTGGGATCAGGAACCCAAGA  692

seq1  CTTTCCTGGGTGGAGTGCAGCCCGCTTTCCCTGCCCATTCCCTCAGCGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGGGTGGAGTGCAGCCCGCTTTCCCTGCCCATTCCCTCAGCGAA  742

seq1  CTGCTGACAGTGGCAAAGCCACGTTGCCATGCTTGGAGGGAGGGGGCAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGACAGTGGCAAAGCCACGTTGCCATGCTTGGAGGGAGGGGGCAGT  792

seq1  AAGACGGGACGGGACGGGACATAACTCTCTTTGCTTTGATCTTAATGGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGGGACGGGACGGGACATAACTCTCTTTGCTTTGATCTTAATGGGA  842

seq1  AAAAAAAGTTTGGGTTTGATTTCGCCTGGAGCTTGCTGAGAGTTCCTGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTTTGGGTTTGATTTCGCCTGGAGCTTGCTGAGAGTTCCTGAC  892

seq1  TGGGCTTGGCCTTGCACGGGGAGGGAGAATCGGGGGTCTTTAGGACCCGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGGCCTTGCACGGGGAGGGAGAATCGGGGGTCTTTAGGACCCGG  942

seq1  GTGCACTCGGACCAGCGGTGCCGGGAGGCCGACCTGCCGCGGCTTGAATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTCGGACCAGCGGTGCCGGGAGGCCGACCTGCCGCGGCTTGAATG  992

seq1  GGAGGCGGGCGGCGGCGCCGAGAGGCTGGCGGCGGACTAGCTCTACGGTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCGGGCGGCGGCGCCGAGAGGCTGGCGGCGGACTAGCTCTACGGTC  1042

seq1  GCCAGGCAACCGCCCTGACGCAACGCAAAAGAACGTCCCTTCAAAAAAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCAACCGCCCTGACGCAACGCAAAAGAACGTCCCTTCAAAAAAGA  1092

seq1  ACGGTGCGGAGAATTC  1113
      ||||||||||||||||
seq2  ACGGTGCGGAGAATTC  1108