BAC Information

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BAC

Clone NameB6Ng01-170K12
Chromosome14 (Build37)
Map Location 89,725,987 - 89,727,135
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170K12.bB6Ng01-170K12.g
ACCDH961313DH961314
length2141,136
definitionDH961313|Mus musculus domesticus DNA, BAC clone: B6Ng01-170K12, 5' end.DH961314|Mus musculus domesticus DNA, BAC clone: B6Ng01-170K12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaatgagcaggggctgtctgactcatttgcctggttttgggac
cctttcccttctattagttcacctttttaagccttaaaacatgaaggaag
tgcctgatcttattgcaacataatatgctatgttaagttgatatccctgg
gaaacctgtccttttctgaagagaaatggaagactggatgatgggtaggg
ggagaagagatggg
gaattcattaatatgcaaacaaagtatatatatatatatatatatatata
aaacggtgaaaataatgtgactaaaagcactgcccccagtctactgaact
ctattagttactgactgtcctcaaaaagcaatggagatacaatttgtgct
tttggcagaatgccttccagttcgttcctaaaacgaaggactgtccgact
tggtgccctttcatgcttttctatctgccaagagtgtgttttcttgggac
cttcaagaagcctgatttatttcatcttccaaatctcagtttaaatatca
tcaactcagacaggacttctctaaatacatttataattagaccttccgtt
gccaatttctattccagaccattttaatgatttcgattatacctttgtac
atttcttcattcataatgatttgtgtctatgcttaatgtcattactaaat
tataaaacttttgatgagataagagcccctatatttatatgatgagtgta
tagaaaagattttaatcattacctacaagtatttggtgaatatgtaaagt
ggtctaaagtatacttgcaggctgtcatggagtaggtctgacctaactgc
cttcaaagtcaatgtcatagatctttcaggttagagtccatggctcctgg
ggcacaatgtttcttcctgttttttccatatactccctcaggcagtaaag
tattcatgcctctttgtgtttctctctaaattctctttagtggtcaaaga
actatgaaatcttgacaggtcaattggtcttagacattaatcttatacac
tctgtattccttgcaaacatcattgtttgctagcaattacactatattga
tcctggcaattgccattatattctgtttctgacaaaggtagaaaagtctg
attggtcttaataaactgacacagcttcaatttttctgtggcttctgcaa
tcagaggctggtttcattccttgctgcataatgaggtgactttaccctgg
taagtaacacaggtgctactatatttttgtatggtactgtacatctaatt
ctatcaattgaaacaaagacttaaaggtaagattagtgatttttgcttct
atgaggtccttttcaagtaagaaaaagatccagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89725987_89727135
seq2: B6Ng01-170K12.g_68_1203

seq1  GAATTCATTAATATGCAAACAAAGTATATATATATATATATATATATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATATGCAAACAAAGTATATATATATATATATATATATATA  50

seq1  AAACGGTGAAAATAATGTGACTAAAAGCACTGCCCCCAGTCTACTGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGTGAAAATAATGTGACTAAAAGCACTGCCCCCAGTCTACTGAACT  100

seq1  CTATTAGTTACTGACTGTCCTCAAAAAGCAATGGAGATACAATTTGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGTTACTGACTGTCCTCAAAAAGCAATGGAGATACAATTTGTGCT  150

seq1  TTTGGCAGAATGCCTTCCAGTTCGTTCCTAAAACGAAGGACTGTCCGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAGAATGCCTTCCAGTTCGTTCCTAAAACGAAGGACTGTCCGACT  200

seq1  TGGTGCCCTTTCATGCTTTTCTATCTGCCAAGAGTGTGTTTTCTTGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCCTTTCATGCTTTTCTATCTGCCAAGAGTGTGTTTTCTTGGGAC  250

seq1  CTTCAAGAAGCCTGATTTATTTCATCTTCCAAATCTCAGTTTAAATATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGAAGCCTGATTTATTTCATCTTCCAAATCTCAGTTTAAATATCA  300

seq1  TCAACTCAGACAGGACTTCTCTAAATACATTTATAATTAGACCTTCCGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCAGACAGGACTTCTCTAAATACATTTATAATTAGACCTTCCGTT  350

seq1  GCCAATTTCTATTCCAGACCATTTTAATGATTTCGATTATACCTTTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTTCTATTCCAGACCATTTTAATGATTTCGATTATACCTTTGTAC  400

seq1  ATTTCTTCATTCATAATGATTTGTGTCTATGCTTAATGTCATTACTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCATTCATAATGATTTGTGTCTATGCTTAATGTCATTACTAAAT  450

seq1  TATAAAACTTTTGATGAGATAAGAGCCCCTATATTTATATGATGAGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACTTTTGATGAGATAAGAGCCCCTATATTTATATGATGAGTGTA  500

seq1  TAGAAAAGATTTTAATCATTACCTACAAGTATTTGGTGAATATGTAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGATTTTAATCATTACCTACAAGTATTTGGTGAATATGTAAAGT  550

seq1  GGTCTAAAGTATACTTGCAGGCTGTCATGGAGTAGGTCTGACCTAACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAAAGTATACTTGCAGGCTGTCATGGAGTAGGTCTGACCTAACTGC  600

seq1  CTTCAAAGTCAATGTCATAGATCTTTCAGGTTAGAGTCCATGGCTCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGTCAATGTCATAGATCTTTCAGGTTAGAGTCCATGGCTCCTGG  650

seq1  GGCACAATGTTTCTTCCTGTTTCTTCCATATACTCCCTCAGGCAGTAAAG  700
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGCACAATGTTTCTTCCTGTTTTTTCCATATACTCCCTCAGGCAGTAAAG  700

seq1  TATTCATGCCTCTTTGTGTTTCTCTCTAAATTC-CCTTAGTGGTCAAAGA  749
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  TATTCATGCCTCTTTGTGTTTCTCTCTAAATTCTCTTTAGTGGTCAAAGA  750

seq1  ACTATGAAATCTTGACAGGTCAATTGGTCTTAGACATTAATCTTATACAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAAATCTTGACAGGTCAATTGGTCTTAGACATTAATCTTATACAC  800

seq1  TCTGTATTCCTTGCAAACATCATTGTTTGCTAGCAATTACAACTATATTG  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTGTATTCCTTGCAAACATCATTGTTTGCTAGCAATTAC-ACTATATTG  849

seq1  ATCCTGGCAATTGCCATTATATTCTGTTTCTGACAAAGGTAGAAAAAGTC  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATCCTGGCAATTGCCATTATATTCTGTTTCTGACAAAGGTAG-AAAAGTC  898

seq1  TGATTGGCCTCAATAAAACTGACACAGCTTCAATCTTCCTGTGGCTCCTG  949
      ||||||| || ||| ||||||||||||||||||| || |||||||| |||
seq2  TGATTGGTCTTAAT-AAACTGACACAGCTTCAATTTTTCTGTGGCTTCTG  947

seq1  CAACCAGAGGCTGGTTTCATTCCTTGCTGCCATATGAGGTGACTTTACCC  999
      ||| ||||||||||||||||||||||||||   |||||||||||||||||
seq2  CAATCAGAGGCTGGTTTCATTCCTTGCTGCATAATGAGGTGACTTTACCC  997

seq1  TGGTAAGTAAACACAGGTGCCTACATATA-TTTTGTATGGTACTGTAACA  1048
      |||||||| |||||||||| |||| |||| |||||||||||||||| |||
seq2  TGGTAAGT-AACACAGGTG-CTAC-TATATTTTTGTATGGTACTGT-ACA  1043

seq1  TCTAATTCTATCAATTGAAACAAAGACATTAAGGTAAAGATTAGTGATTA  1098
      ||||||||||||||||||||||||||| | ||||| ||||||||||||| 
seq2  TCTAATTCTATCAATTGAAACAAAGACTTAAAGGT-AAGATTAGTGATT-  1091

seq1  TTTGCCTCTATGAAGTTTACTATTACAAAGTAAGAAAAAAGATCTCAGAG  1148
      ||||| ||||||| |  | || ||   ||||||| ||||||||| |||||
seq2  TTTGCTTCTATGAGG--TCCTTTT--CAAGTAAG-AAAAAGATC-CAGAG  1135

seq1  A  1149
      |
seq2  A  1136