BAC Information

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BAC

Clone NameB6Ng01-171A21
Chromosome14 (Build37)
Map Location 14,215,097 - 14,395,525
singlet/doubletdoublet
Overlap geneSynpr
Upstream geneCadps, EG432822, LOC100042022, LOC100042026, EG328354
Downstream geneA430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171A21.bB6Ng01-171A21.g
ACCGA000039GA000040
length1,078852
definitionB6Ng01-171A21.b B6Ng01-171A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,394,444 - 14,395,525)(14,215,097 - 14,215,944)
sequence
gaattctgctgaggatgaggagtctccaaccaatgccagcttctgctgtt
cctttccctcacaggtgggcacttcaaaggtcacctgttgcagcctgaaa
ccatcagaggcaagaagacaattgacatgttgtagaagttgaaatgacca
ctgtcacatctgctaacactaaccaccatgaaacatccagtgaagaattt
gtaagtctatttacagattctagcttgacctagggaaatgaataccacag
agatggtaattcatcctgcagaggtgagaaggggagagagactctgaaat
cagcccagccttctgctgagacttaagaaagtggcccagtaagccttggg
tcccttctgtgtttccagcctctttcctcagtgtgttagggcctgccctt
ctgctccacacataacctgcctaacctgctgcagttataatctttctgtg
cattttccatggacttttccacctgtgcttgcccactaagatgcaattct
cacatcctccctggggaacctcactattgtgctttctttccttttgacat
tttattgtactttttaaaaaaaattttggaattataatataattacactt
cttccaacattttgagtctcatcaagctgctttataacatttatggtgtt
tgttaatcggtaaagccatttagatgataacgcttgtctcttgtttgttt
ttcctatctgtattgcttcctcagtagggactaccagtctctgtggaagt
gtggatttgggttcttttttctgtataccctaaagctggcttttattagg
catttggtacatgaataagtgaatggacagtcttaattttgccaggtcct
aacttgaaccctttgagaggtttaggttgtaagctccccaagaggagcat
ttcacacagcacagtagtccatttatagagacccatgaaatgcttaagca
acacttttcttcactacagccacccaagaagtcatattacacaaatatct
tcggttgtgagctgaatgaagtgtgactatatatgttacagggactaaga
ttcctcaacttgtgttacagctttgatg
gaattcataatcctcctgctactgccttctgaggcagggatcacaatcac
accaacacagctatttcttgtctgtttatcaatatacaaaattctgaggt
tttttgtgagctagcaaagacagtaatgatctctctctctctctctctct
ctctctctctctctctctctccttgtgaaattcaaagcttcaggaaacca
aaactccttcctgcccctttataattccagtaccactttaagaagagaat
tctggtttgatgttttgagttagctcatttaaatcttagaacaacattgg
aaagctctatgcatctctgcacctgaggactacttgtgttctttctgggt
tttgaaagtcaaagaaatcagcaaatggcaaaacagatgagggagacatg
gagtcagttaaaaggataaatatgttattgccgtgtcccctgacacctct
ccaatgggagccagttctctgtcctagggaaaaatctagcccaagttggg
tacaatggtgttttaaaatacttttcatgacttcatttagaaaaccaggc
ccttgagagcattctgagaggatcaactctgcctagggttcaggatttct
ttaatcatttgatcaccctttagatggatttaaaaatatatatcgacaag
ctgtccagtgtgccaacaaaggctccgatggctgtgcactttgcttcagg
aactcaggtcttttagtagtctgaagaatgagacttgttcttgtccagac
tgtctactggaatgcagctgtggtgctgtacatcctggtgtttggaaatg
gtcagcagcatgtactctttttgtctagaatttgtccggaatctctggaa
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_14394444_14395525
seq2: B6Ng01-171A21.b_30_1107 (reverse)

seq1  CATCAAAGCTGTAACACATTTCTGAAGAATCTTAGTTCCTGTAACATATT  50
      ||||||||||||||||||  | ||| |||||||||| ||||||||||| |
seq2  CATCAAAGCTGTAACACAAGT-TGAGGAATCTTAGTCCCTGTAACATA-T  48

seq1  ATAGTCACCACTTCATTCCAGCTCACACCCTTAAGATATTTGTGTAATAT  100
      ||||||| ||||||||| ||||||||| ||  ||||||||||||||||||
seq2  ATAGTCA-CACTTCATT-CAGCTCACAACC-GAAGATATTTGTGTAATAT  95

seq1  GACTTCTTTGGGTGGCTGTAGTTGAAG-AAAGTGTTGCTTAAGCATTTCA  149
      |||||| |||||||||||||| ||||| ||||||||||||||||||||||
seq2  GACTTC-TTGGGTGGCTGTAG-TGAAGAAAAGTGTTGCTTAAGCATTTCA  143

seq1  TGGGTCTCTAT-AATGGACTACTGTGCTGTGTGAAATGCTCCTCTTGGGG  198
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCTATAAATGGACTACTGTGCTGTGTGAAATGCTCCTCTTGGGG  193

seq1  AGCTTACAACCTAAACCTCTC-AAGGGTTCAAGTTAGGACCTGGCAAAAT  247
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCTTACAACCTAAACCTCTCAAAGGGTTCAAGTTAGGACCTGGCAAAAT  243

seq1  TAAGACTGTCCATTCACTTATTCATGTACCAAATGCCTAATAAAAGCCAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTGTCCATTCACTTATTCATGTACCAAATGCCTAATAAAAGCCAG  293

seq1  CTTTAGGGTATACAGAAAAAAGAACCCAAATCCACACTTCCACAGAGACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGGTATACAGAAAAAAGAACCCAAATCCACACTTCCACAGAGACT  343

seq1  GGTAGTCCCTACTGAGGAAGCAATACAGATAGGAAAAACAAACAAGAGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCCCTACTGAGGAAGCAATACAGATAGGAAAAACAAACAAGAGAC  393

seq1  AAGCGTTATCATCTAAATGGCTTTACCGATTAACAAACACCATAAATGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTTATCATCTAAATGGCTTTACCGATTAACAAACACCATAAATGTT  443

seq1  ATAAAGCAGCTTGATGAGACTCAAAATGTTGGAAGAAGTGTAATTATATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCAGCTTGATGAGACTCAAAATGTTGGAAGAAGTGTAATTATATT  493

seq1  ATAATTCCAAAATTTTTTTTAAAAAGTACAATAAAATGTCAAAAGGAAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCCAAAATTTTTTTTAAAAAGTACAATAAAATGTCAAAAGGAAAG  543

seq1  AAAGCACAATAGTGAGGTTCCCCAGGGAGGATGTGAGAATTGCATCTTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACAATAGTGAGGTTCCCCAGGGAGGATGTGAGAATTGCATCTTAG  593

seq1  TGGGCAAGCACAGGTGGAAAAGTCCATGGAAAATGCACAGAAAGATTATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAGCACAGGTGGAAAAGTCCATGGAAAATGCACAGAAAGATTATA  643

seq1  ACTGCAGCAGGTTAGGCAGGTTATGTGTGGAGCAGAAGGGCAGGCCCTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGCAGGTTAGGCAGGTTATGTGTGGAGCAGAAGGGCAGGCCCTAA  693

seq1  CACACTGAGGAAAGAGGCTGGAAACACAGAAGGGACCCAAGGCTTACTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGAGGAAAGAGGCTGGAAACACAGAAGGGACCCAAGGCTTACTGG  743

seq1  GCCACTTTCTTAAGTCTCAGCAGAAGGCTGGGCTGATTTCAGAGTCTCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTTCTTAAGTCTCAGCAGAAGGCTGGGCTGATTTCAGAGTCTCTC  793

seq1  TCCCCTTCTCACCTCTGCAGGATGAATTACCATCTCTGTGGTATTCATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCTCACCTCTGCAGGATGAATTACCATCTCTGTGGTATTCATTT  843

seq1  CCCTAGGTCAAGCTAGAATCTGTAAATAGACTTACAAATTCTTCACTGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGTCAAGCTAGAATCTGTAAATAGACTTACAAATTCTTCACTGGA  893

seq1  TGTTTCATGGTGGTTAGTGTTAGCAGATGTGACAGTGGTCATTTCAACTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATGGTGGTTAGTGTTAGCAGATGTGACAGTGGTCATTTCAACTT  943

seq1  CTACAACATGTCAATTGTCTTCTTGCCTCTGATGGTTTCAGGCTGCAACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACATGTCAATTGTCTTCTTGCCTCTGATGGTTTCAGGCTGCAACA  993

seq1  GGTGACCTTTGAAGTGCCCACCTGTGAGGGAAAGGAACAGCAGAAGCTGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCTTTGAAGTGCCCACCTGTGAGGGAAAGGAACAGCAGAAGCTGG  1043

seq1  CATTGGTTGGAGACTCCTCATCCTCAGCAGAATTC  1082
      |||||||||||||||||||||||||||||||||||
seq2  CATTGGTTGGAGACTCCTCATCCTCAGCAGAATTC  1078

seq1: chr14_14215097_14215944
seq2: B6Ng01-171A21.g_65_916

seq1  GAATTCATAATCCTCCTGCTACTGCCTTCTGAGGCAGGGATCACAATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATCCTCCTGCTACTGCCTTCTGAGGCAGGGATCACAATCAC  50

seq1  ACCAACACAGCTATTTCTTGTCTGTTTATCAATATACAAAATTCTGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACACAGCTATTTCTTGTCTGTTTATCAATATACAAAATTCTGAGGT  100

seq1  TTTTTGTGAGCTAGCAAAGACAGTAATGATCTCTCTCTCTCTCTCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGAGCTAGCAAAGACAGTAATGATCTCTCTCTCTCTCTCTCTCT  150

seq1  CTCTCTCTCTCTCTCTCTCTCCTTGTGAAATTCAAAGCTTCAGGAAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCCTTGTGAAATTCAAAGCTTCAGGAAACCA  200

seq1  AAACTCCTTCCTGCCCCTTTATAATTCCAGTACCACTTTAAGAAGAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCTTCCTGCCCCTTTATAATTCCAGTACCACTTTAAGAAGAGAAT  250

seq1  TCTGGTTTGATGTTTTGAGTTAGCTCATTTAAATCTTAGAACAACATTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTGATGTTTTGAGTTAGCTCATTTAAATCTTAGAACAACATTGG  300

seq1  AAAGCTCTATGCATCTCTGCACCTGAGGACTACTTGTGTTCTTTCTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTATGCATCTCTGCACCTGAGGACTACTTGTGTTCTTTCTGGGT  350

seq1  TTTGAAAGTCAAAGAAATCAGCAAATGGCAAAACAGATGAGGGAGACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGTCAAAGAAATCAGCAAATGGCAAAACAGATGAGGGAGACATG  400

seq1  GAGTCAGTTAAAAGGATAAATATGTTATTGCCGTGTCCCCTGACACCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGTTAAAAGGATAAATATGTTATTGCCGTGTCCCCTGACACCTCT  450

seq1  CCAATGGGAGCCAGTTCTCTGTCCTAGGGAAAAATCTAGCCCAAGTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGGAGCCAGTTCTCTGTCCTAGGGAAAAATCTAGCCCAAGTTGGG  500

seq1  TACAATGGTGTTTTAAAATACTTTTCATGACTTCATTTAGAAAACCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGGTGTTTTAAAATACTTTTCATGACTTCATTTAGAAAACCAGGC  550

seq1  CCTTGAGAGCATTCTGAGAGGATCAACTCTGCCTAGGGTTCAGGATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGAGCATTCTGAGAGGATCAACTCTGCCTAGGGTTCAGGATTTCT  600

seq1  TTAATCATTTGATCACCCTTTAGATGGATTTAAAAATATATATCGACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATTTGATCACCCTTTAGATGGATTTAAAAATATATATCGACAAG  650

seq1  CTGTCCAGTGTGCCAACAAAGGCTCCGATGGCTGTGCACTTTGCTTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAGTGTGCCAACAAAGGCTCCGATGGCTGTGCACTTTGCTTCAGG  700

seq1  AACTCAGGTC-TTTAGTAGTCTGAAGAATGAGACTTGTTCTTGTCCAGAC  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGTCTTTTAGTAGTCTGAAGAATGAGACTTGTTCTTGTCCAGAC  750

seq1  TGTCTACTGGAATGCAGCTGTGGTGCTGTACATCCTGGTG-TTGGAAATG  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTCTACTGGAATGCAGCTGTGGTGCTGTACATCCTGGTGTTTGGAAATG  800

seq1  GTCAGCAGCATGTACTC-TTTTGTCTAGAATTTGT-CGGAATCTCTGGAA  846
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  GTCAGCAGCATGTACTCTTTTTGTCTAGAATTTGTCCGGAATCTCTGGAA  850

seq1  AT  848
      ||
seq2  AT  852