BAC Information

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BAC

Clone NameB6Ng01-171H15
Chromosome14 (Build37)
Map Location 48,725,478 - 48,844,991
singlet/doubletdoublet
Overlap genePeli2, EG624367
Upstream geneGch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2
Downstream geneLOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171H15.bB6Ng01-171H15.g
ACCGA000353GA000354
length1,0251,165
definitionB6Ng01-171H15.b B6Ng01-171H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,843,979 - 48,844,991)(48,725,478 - 48,726,618)
sequence
gaattccaatgcttggggtgaccttggactacacagagcaaaagcaatgt
cctctcccagagatgtctaggcaccctgagggtggcaagccagctgtttc
tctccacacttgacaaggcccagccagaggttcaagtcagtgactcatca
ggattcagacaagcagccaggcccagctcctcttttactgggttcctaga
ctacagactgaagccgagtccaggactcggttttggtcctgtgcagtctg
gccatgctccctgctcctctgggcccatatgccatgcatgctggtcaaga
gtccctgcctccctgacctccattccccacaccctctggctgcgttctct
cacttctcctgtgactcaccgctcagctgggtgctcctgtcaatcaccct
taactgaatgcgcagccctgattagggctagggattgcatggcttaaaga
ctgtgtcacctggtcttccgggcagtttaggatttctgtttttcagtaat
tctttctactaaaggatggaaatatcaatttgaattttgctatagatctt
gaaacactcaaattgagagtgttagtctacccttcaaggaaataaataag
aatgtgcaaacaacggtattatttaccgtgttacctgaagccacacagat
agctggctttatggcaagctcatcacatagtaaaagcagtacagacaccg
aaaattatttttatgcttcaattaaaatttatgccactactttccatggt
ttaaacacacccaatattctgaaaatacattgtaacggatggcactgcag
ctgcttctgctaaaaaatgtccaaatggagttttctccatgtgtgccagt
tatgtggtagttagcccaaatgaaaatcaaaaacagagcttacatttttt
tctttcctttttggcaataaagctatgggcattttaagacatttctgaag
agaaaaaaaaaggattgtcctctcctttatttcaacattttccaaataat
aggagcatgggtctccaatctttcc
gaattcttattggttaacaccagatctttctggtagcaaatcatgagcca
aaggctattcctaacaagaggagaaacatcttcctcaaaccactgatcag
tgaccgagcaaagagaaaggttaataagaactcggatggacaaagcaggt
ggttgtgaatttacgattggattttgtggcattcaagtgtttaattctcc
catgatggcaatcacacaacaaccttagcttaagtgctccgagaggaatg
caaaatgtcacctcatcttataatttatcttaggggggtagttacaactt
ctacttgctatctggtgcttgttcctactttaatttttggtcatgggggt
tcgttccatctgtgctgagctgtgtcaacgtgcccttggattgtttctgt
gagtgggcacgtggcaatggagatgaggtcatgagggtttgtgtgttgac
tttgcagctgaacacacccaatctcttcacacgtgcagtcataacagctg
aacttaaaagattatggagaggttaagataaaatgagtttggccagcatg
atttaaggtcaaatgatattcatagacggtgacctcctacatcaaactct
tagctctagtttcctaacagaagccgagcacttagtgctttcttgtaatt
aaactgttgtacagcacttcacagtttgggaagcattgtcaagtggaccc
atttcttatataattctgaaattcgagttgccacaaatgacatttcacag
aaaagccacagatcctgtgggctctgccagccagagtcaactaaattcga
tcccaaatgcagagcactttccaacacgtgagacttggggactcctgcac
aacagctgtcttactggccaccgtgtcatccgctgtatctgtcactgttg
cctccaacaatcatagataacatttgatcacattttgatcttctaggact
gcaacagaagcaagtgcaacagaagttctcaggacacaccgggcatgttt
ttataaaacatccccatggaacctgggtcccaattaccgttacacttaaa
ctgcacttgccatgggcttccagaatacagtgcatttatcataggtagga
cttagcagtctccactccgaaccggcatagcttgaaggcaggcattggaa
agggttgttgtggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_48843979_48844991
seq2: B6Ng01-171H15.b_46_1070 (reverse)

seq1  GGAAAGAT--GAGA-CCATGCT-CTA-TATTTGGAAAATGTTGAAATTAA  45
      ||||||||  |||| ||||||| ||| ||||||||||||||||||| |||
seq2  GGAAAGATTGGAGACCCATGCTCCTATTATTTGGAAAATGTTGAAA-TAA  49

seq1  AGGAGA-GACA--TCTTTTTTTTTCTCTTCAGAAATGTCTTAAAATGCCC  92
      |||||| ||||   ||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGACAATCCTTTTTTTTTCTCTTCAGAAATGTCTTAAAATGCCC  99

seq1  ATAGCTTTATTGCCAAAAAGGAAAG-AAAAAATGTAAGCTCTG-TTTTGA  140
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  ATAGCTTTATTGCCAAAAAGGAAAGAAAAAAATGTAAGCTCTGTTTTTGA  149

seq1  -TTTCA-TTGGGCTAACTACCACATAACTGGCACACATGGAG-AAACTCC  187
       ||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTCATTTGGGCTAACTACCACATAACTGGCACACATGGAGAAAACTCC  199

seq1  ATTTGGACATTTTTTAGCAGAAGCAGCTGCAGTGCCATCCGTTACAATGT  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGACATTTTTTAGCAGAAGCAGCTGCAGTGCCATCCGTTACAATGT  249

seq1  ATTTTCAGAATATTGGGTGTGTTTAAACCATGGAAAGTAGTGGCATAAAT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGAATATTGGGTGTGTTTAAACCATGGAAAGTAGTGGCATAAAT  299

seq1  TTTAATTGAAGCATAAAAATAATTTTCGGTGTCTGTACTGCTTTTACTAT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGAAGCATAAAAATAATTTTCGGTGTCTGTACTGCTTTTACTAT  349

seq1  GTGATGAGCTTGCCATAAAGCCAGCTATCTGTGTGGCTTCAGGTAACACG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGCTTGCCATAAAGCCAGCTATCTGTGTGGCTTCAGGTAACACG  399

seq1  GTAAATAATACCGTTGTTTGCACATTCTTATTTATTTCCTTGAAGGGTAG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAATACCGTTGTTTGCACATTCTTATTTATTTCCTTGAAGGGTAG  449

seq1  ACTAACACTCTCAATTTGAGTGTTTCAAGATCTATAGCAAAATTCAAATT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACACTCTCAATTTGAGTGTTTCAAGATCTATAGCAAAATTCAAATT  499

seq1  GATATTTCCATCCTTTAGTAGAAAGAATTACTGAAAAACAGAAATCCTAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTCCATCCTTTAGTAGAAAGAATTACTGAAAAACAGAAATCCTAA  549

seq1  ACTGCCCGGAAGACCAGGTGACACAGTCTTTAAGCCATGCAATCCCTAGC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCGGAAGACCAGGTGACACAGTCTTTAAGCCATGCAATCCCTAGC  599

seq1  CCTAATCAGGGCTGCGCATTCAGTTAAGGGTGATTGACAGGAGCACCCAG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCAGGGCTGCGCATTCAGTTAAGGGTGATTGACAGGAGCACCCAG  649

seq1  CTGAGCGGTGAGTCACAGGAGAAGTGAGAGAACGCAGCCAGAGGGTGTGG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCGGTGAGTCACAGGAGAAGTGAGAGAACGCAGCCAGAGGGTGTGG  699

seq1  GGAATGGAGGTCAGGGAGGCAGGGACTCTTGACCAGCATGCATGGCATAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGAGGTCAGGGAGGCAGGGACTCTTGACCAGCATGCATGGCATAT  749

seq1  GGGCCCAGAGGAGCAGGGAGCATGGCCAGACTGCACAGGACCAAAACCGA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCAGAGGAGCAGGGAGCATGGCCAGACTGCACAGGACCAAAACCGA  799

seq1  GTCCTGGACTCGGCTTCAGTCTGTAGTCTAGGAACCCAGTAAAAGAGGAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGACTCGGCTTCAGTCTGTAGTCTAGGAACCCAGTAAAAGAGGAG  849

seq1  CTGGGCCTGGCTGCTTGTCTGAATCCTGATGAGTCACTGACTTGAACCTC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTGGCTGCTTGTCTGAATCCTGATGAGTCACTGACTTGAACCTC  899

seq1  TGGCTGGGCCTTGTCAAGTGTGGAGAGAAACAGCTGGCTTGCCACCCTCA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGCCTTGTCAAGTGTGGAGAGAAACAGCTGGCTTGCCACCCTCA  949

seq1  GGGTGCCTAGACATCTCTGGGAGAGGACATTGCTTTTGCTCTGTGTAGTC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCTAGACATCTCTGGGAGAGGACATTGCTTTTGCTCTGTGTAGTC  999

seq1  CAAGGTCACCCCAAGCATTGGAATTC  1013
      ||||||||||||||||||||||||||
seq2  CAAGGTCACCCCAAGCATTGGAATTC  1025

seq1: chr14_48725478_48726618
seq2: B6Ng01-171H15.g_70_1234

seq1  GAATTCTTATTGGTTAACACCAGATCTTTCTGGTAGCAAATCATGAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTGGTTAACACCAGATCTTTCTGGTAGCAAATCATGAGCCA  50

seq1  AAGGCTATTCCTAACAAGAGGAGAAACATCTTCCTCAAACCACTGATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTATTCCTAACAAGAGGAGAAACATCTTCCTCAAACCACTGATCAG  100

seq1  TGACCGAGCAAAGAGAAAGGTTAATAAGAACTCGGATGGACAAAGCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCGAGCAAAGAGAAAGGTTAATAAGAACTCGGATGGACAAAGCAGGT  150

seq1  GGTTGTGAATTTACGATTGGATTTTGTGGCATTCAAGTGTTTAATTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAATTTACGATTGGATTTTGTGGCATTCAAGTGTTTAATTCTCC  200

seq1  CATGATGGCAATCACACAACAACCTTAGCTTAAGTGCTCCGAGAGGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGGCAATCACACAACAACCTTAGCTTAAGTGCTCCGAGAGGAATG  250

seq1  CAAAATGTCACCTCATCTTATAATTTATCTTAGGGGGGTAGTTACAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTCACCTCATCTTATAATTTATCTTAGGGGGGTAGTTACAACTT  300

seq1  CTACTTGCTATCTGGTGCTTGTTCCTACTTTAATTTTTGGTCATGGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGCTATCTGGTGCTTGTTCCTACTTTAATTTTTGGTCATGGGGGT  350

seq1  TCGTTCCATCTGTGCTGAGCTGTGTCAACGTGCCCTTGGATTGTTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCCATCTGTGCTGAGCTGTGTCAACGTGCCCTTGGATTGTTTCTGT  400

seq1  GAGTGGGCACGTGGCAATGGAGATGAGGTCATGAGGGTTTGTGTGTTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGCACGTGGCAATGGAGATGAGGTCATGAGGGTTTGTGTGTTGAC  450

seq1  TTTGCAGCTGAACACACCCAATCTCTTCACACGTGCAGTCATAACAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGCTGAACACACCCAATCTCTTCACACGTGCAGTCATAACAGCTG  500

seq1  AACTTAAAAGATTATGGAGAGGTTAAGATAAAATGAGTTTGGCCAGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAAGATTATGGAGAGGTTAAGATAAAATGAGTTTGGCCAGCATG  550

seq1  ATTTAAGGTCAAATGATATTCATAGACGGTGACCTCCTACATCAAACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGTCAAATGATATTCATAGACGGTGACCTCCTACATCAAACTCT  600

seq1  TAGCTCTAGTTTCCTAACAGAAGCCGAGCACTTAGTGCTTTCTTGTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTAGTTTCCTAACAGAAGCCGAGCACTTAGTGCTTTCTTGTAATT  650

seq1  AAACTGTTGTACAGCACTTCACAGTTTGGGAAGCATTGTCAAGTGGACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTGTACAGCACTTCACAGTTTGGGAAGCATTGTCAAGTGGACCC  700

seq1  ATTTCTTATATAATTCTGAAATTCGAGTTGCCACAAATGACATTTCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATATAATTCTGAAATTCGAGTTGCCACAAATGACATTTCACAG  750

seq1  AAAAGCCACAGATCCTGTGGGCTCTGCCAGCCAGAGTCAACTAAATTCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCACAGATCCTGTGGGCTCTGCCAGCCAGAGTCAACTAAATTCGA  800

seq1  TCCCAAATGCAGAGCAC-TTCCAACACGTGAGACTT-GGGACTCCTGCAC  848
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  TCCCAAATGCAGAGCACTTTCCAACACGTGAGACTTGGGGACTCCTGCAC  850

seq1  AACAGCTGTCTTACTGGCCACCGTGTCATCCGCTGTATCTGTCACTG-TG  897
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AACAGCTGTCTTACTGGCCACCGTGTCATCCGCTGTATCTGTCACTGTTG  900

seq1  CCTCCAAC-ATCATAGATAACA-TTGGTCACA-TTTGATCTTCTAGGACT  944
      |||||||| ||||||||||||| ||| ||||| |||||||||||||||||
seq2  CCTCCAACAATCATAGATAACATTTGATCACATTTTGATCTTCTAGGACT  950

seq1  GC-ACAG-AGCAAGTGC-ACAG-AGTTCTCAGGACACACC-GGCATG-TT  988
      || |||| ||||||||| |||| ||||||||||||||||| |||||| ||
seq2  GCAACAGAAGCAAGTGCAACAGAAGTTCTCAGGACACACCGGGCATGTTT  1000

seq1  TTAT-AAACATCCCCATGTA--CTGTGTCCCA--TAACGTTACACTTACA  1033
      |||| ||||||||||||| |  ||| ||||||  || ||||||||||| |
seq2  TTATAAAACATCCCCATGGAACCTGGGTCCCAATTACCGTTACACTTAAA  1050

seq1  CTGCACTGCACAT-GGCT--CAG-ATACAGTGCATTATCCATAGGTAGGG  1079
      |||||||   ||| ||||  ||| ||||||||||||   |||||||| ||
seq2  CTGCACTTGCCATGGGCTTCCAGAATACAGTGCATTTATCATAGGTA-GG  1099

seq1  ACTTAGCAGTCT-CACTTCGCAGACGGGATAGCT--GAGGCAGGCAT--G  1124
      |||||||||||| |||| || |  ||| ||||||   ||||||||||  |
seq2  ACTTAGCAGTCTCCACTCCG-AACCGGCATAGCTTGAAGGCAGGCATTGG  1148

seq1  AGAAGGTTGTTGTGGAA  1141
      | | ||||||||||| |
seq2  AAAGGGTTGTTGTGGTA  1165