BAC Information

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BAC

Clone NameB6Ng01-171N06
Chromosome14 (Build37)
Map Location 73,279,361 - 73,437,523
singlet/doubletdoublet
Overlap geneLOC100043723, LOC668487, LOC668489, Cysltr2
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721
Downstream geneLOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171N06.bB6Ng01-171N06.g
ACCGA000607GA000608
length373992
definitionB6Ng01-171N06.b B6Ng01-171N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,437,151 - 73,437,523)(73,279,361 - 73,280,348)
sequence
tcccatgagtttccctctctccctacctgtaccttctgacttgggagtgt
gtagcttccagggaagcgctgtacttgtcaggacctgtaagtaagcaaat
ctttttacttttatttcgtgtctctcctaactgttgaagaggtacttcca
tcttacatttaaaaggctggaaaatgagtgtttcaggaagaaaatgttag
gaaggaattattacaggcttctcgttgctgtgaggtcacttggaaatata
ggtaaaagacagaatttgcagaagtaaacatggtcattagttctgtaata
gattctggaaacagagaaagtaatacccaggcaatgagtatacattgcta
aaatctctgtgtgtgtgtgtgtg
gaattccatccaaacttcaagaaatggcggggtctacctaatgcaaacaa
taagaaacaagtctaaaatccaaacagataataaaatagatttttaaaaa
attagtttagcttggacaataaataggtcaaaaatttcaggtggtcagat
gaaagaattctgtataacagtaaatctggaacacccatctgacgggcgtg
ggctttggcttcttcactgtcatagctgctatcaggaaaagcttccatgt
gtcccatcatgatacagaaagaattcctttgggaatgacacatcccccag
acctgcatcctggctcaagctctctaaataataagcagtcccaagcttcc
tgggacaatgatcctgttgtggccattaggaattcagaaatctcaacctg
cctaaaatatgaaatagttaaaaacttgaatatagagattacaaagtcct
taaagcctaatattacaatttgtgttaaatgcacgaacttgtaatagaca
cgtaagagtaaaagtacttataccaaaaggaatttcttacatgagaagtt
caaaagttagtctgatgtattttatttaagaaatatgtttgggtttgggc
ttatttaaaatggagatgaggaaagtgtacttagattataatcagtgtga
ttccttttcagataacttaaaatgtttaattcattatatttacagaagtc
tttagatagtggaggagaggtattatttcttctggttgcggtctgcctat
ttggccctctgaagggtttatgtagatgctttagagtgttcaacatgaat
taggtaaaatgccaaagtccctttgtctttatggaatttcctagacgtat
aaacaattctaaaaatttttctaaattgaaccacaaggccttaagcaaac
aatggttttacatgtttttattgtattcaattattaattgatcatcaagt
aagtcctttgctcttaattaaatgcatctttgtaattacctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_73437151_73437523
seq2: B6Ng01-171N06.b_48_420 (reverse)

seq1  CACACACACACACACAGAGATTTTAGCAATGTATACTCATTGCCTGGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACAGAGATTTTAGCAATGTATACTCATTGCCTGGGTA  50

seq1  TTACTTTCTCTGTTTCCAGAATCTATTACAGAACTAATGACCATGTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCTCTGTTTCCAGAATCTATTACAGAACTAATGACCATGTTTAC  100

seq1  TTCTGCAAATTCTGTCTTTTACCTATATTTCCAAGTGACCTCACAGCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAAATTCTGTCTTTTACCTATATTTCCAAGTGACCTCACAGCAAC  150

seq1  GAGAAGCCTGTAATAATTCCTTCCTAACATTTTCTTCCTGAAACACTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCTGTAATAATTCCTTCCTAACATTTTCTTCCTGAAACACTCAT  200

seq1  TTTCCAGCCTTTTAAATGTAAGATGGAAGTACCTCTTCAACAGTTAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCCTTTTAAATGTAAGATGGAAGTACCTCTTCAACAGTTAGGAG  250

seq1  AGACACGAAATAAAAGTAAAAAGATTTGCTTACTTACAGGTCCTGACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACGAAATAAAAGTAAAAAGATTTGCTTACTTACAGGTCCTGACAAG  300

seq1  TACAGCGCTTCCCTGGAAGCTACACACTCCCAAGTCAGAAGGTACAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCGCTTCCCTGGAAGCTACACACTCCCAAGTCAGAAGGTACAGGTA  350

seq1  GGGAGAGAGGGAAACTCATGGGA  373
      |||||||||||||||||||||||
seq2  GGGAGAGAGGGAAACTCATGGGA  373

seq1: chr14_73279361_73280348
seq2: B6Ng01-171N06.g_66_1057

seq1  GAATTCCATCCAAACTTCAAGAAATGGCGGGGTCTACCTAATGCAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCAAACTTCAAGAAATGGCGGGGTCTACCTAATGCAAACAA  50

seq1  TAAGAAACAAGTCTAAAATCCAAACAGATAATAAAATAGATTTTTAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACAAGTCTAAAATCCAAACAGATAATAAAATAGATTTTTAAAAA  100

seq1  ATTAGTTTAGCTTGGACAATAAATAGGTCAAAAATTTCAGGTGGTCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTAGCTTGGACAATAAATAGGTCAAAAATTTCAGGTGGTCAGAT  150

seq1  GAAAGAATTCTGTATAACAGTAAATCTGGAACACCCATCTGACGGGCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATTCTGTATAACAGTAAATCTGGAACACCCATCTGACGGGCGTG  200

seq1  GGCTTTGGCTTCTTCACTGTCATAGCTGCTATCAGGAAAAGCTTCCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGGCTTCTTCACTGTCATAGCTGCTATCAGGAAAAGCTTCCATGT  250

seq1  GTCCCATCATGATACAGAAAGAATTCCTTTGGGAATGACACATCCCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATCATGATACAGAAAGAATTCCTTTGGGAATGACACATCCCCCAG  300

seq1  ACCTGCATCCTGGCTCAAGCTCTCTAAATAATAAGCAGTCCCAAGCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCATCCTGGCTCAAGCTCTCTAAATAATAAGCAGTCCCAAGCTTCC  350

seq1  TGGGACAATGATCCTGTTGTGGCCATTAGGAATTCAGAAATCTCAACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAATGATCCTGTTGTGGCCATTAGGAATTCAGAAATCTCAACCTG  400

seq1  CCTAAAATATGAAATAGTTAAAAACTTGAATATAGAGATTACAAAGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATATGAAATAGTTAAAAACTTGAATATAGAGATTACAAAGTCCT  450

seq1  TAAAGCCTAATATTACAATTTGTGTTAAATGCACGAACTTGTAATAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCTAATATTACAATTTGTGTTAAATGCACGAACTTGTAATAGACA  500

seq1  CGTAAGAGTAAAAGTACTTATACCAAAAGGAATTTCTTACATGAGAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGAGTAAAAGTACTTATACCAAAAGGAATTTCTTACATGAGAAGTT  550

seq1  CAAAAGTTAGTCTGATGTATTTTATTTAAGAAATATGTTTGGGTTTGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTTAGTCTGATGTATTTTATTTAAGAAATATGTTTGGGTTTGGGC  600

seq1  TTATTTAAAATGGAGATGAGGAAAGTGTACTTAGATTATAATCAGTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAAATGGAGATGAGGAAAGTGTACTTAGATTATAATCAGTGTGA  650

seq1  TTCCTTTTCAGATAACTTAAAATGTTTAATTCATTATATTTACAGAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTCAGATAACTTAAAATGTTTAATTCATTATATTTACAGAAGTC  700

seq1  TTTAGATAGTGGAGGAGAGGTATTATTTCTTCTGGTTGCGGTCTGCCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATAGTGGAGGAGAGGTATTATTTCTTCTGGTTGCGGTCTGCCTAT  750

seq1  TTGG-CCTCTGAAGGGTTTATGTAGATGC-TTAGAGTGTTCAACATGAA-  797
      |||| |||||||||||||||||||||||| ||||||||||||||||||| 
seq2  TTGGCCCTCTGAAGGGTTTATGTAGATGCTTTAGAGTGTTCAACATGAAT  800

seq1  TAGGTAAAATGCCAAAGTCCC-TTGTCTTTATGGAATTTCCTAGACGTAT  846
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGGTAAAATGCCAAAGTCCCTTTGTCTTTATGGAATTTCCTAGACGTAT  850

seq1  AAACAA-TCTAAAAA-TTTTCT-AATTGAACCACAA-GCCTTAAGCAAAC  892
      |||||| |||||||| |||||| ||||||||||||| |||||||||||||
seq2  AAACAATTCTAAAAATTTTTCTAAATTGAACCACAAGGCCTTAAGCAAAC  900

seq1  AAT-GTTTTACATGTTTTTA-TGTATTCAATTAATTTAATTTTGATCATC  940
      ||| |||||||||||||||| ||||||||||||  ||||  |||||||||
seq2  AATGGTTTTACATGTTTTTATTGTATTCAATTA--TTAA--TTGATCATC  946

seq1  AAGTAAGTCCTTTTGTCTTTAATTAAATGCATCTTTGTTAATTACCTT  988
      |||||||||||||  || ||||||||||||||||||| ||||||||||
seq2  AAGTAAGTCCTTTGCTC-TTAATTAAATGCATCTTTG-TAATTACCTT  992