BAC Information

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BAC

Clone NameB6Ng01-172C11
Chromosome14 (Build37)
Map Location 99,766,329 - 99,880,552
singlet/doubletdoublet
Overlap geneLOC100043789, LOC668671
Upstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400
Downstream geneLOC668672, EG546623, Klf12, LOC100043413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172C11.bB6Ng01-172C11.g
ACCGA000846GA000847
length1,1451,105
definitionB6Ng01-172C11.b B6Ng01-172C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,766,329 - 99,767,479)(99,879,461 - 99,880,552)
sequence
gaattcattccctttagcagggagctgagggctggagaccgtttatctgt
ccactcctgtgttgtagccctgtgtgtggctttatgcttggctaagtgcc
tgtcatgtgtgttggttgccggtacaacagcttggctcatttagtaaagt
aaggagcccggtttttctttgagatagcagccggtaatattccactggag
cccgcagagctgcggaccttcagatgtgctctgtccagggtcccctgcac
tggttttccagcttggggtcatgacttgtcccttgctttggttcctttgt
catttgcttggggttccactgtgtagctgaggtgggcttcaaacttgcca
tcttccagcctctgtctcctcggtgttgtggttacaagtcccctgtcgtg
tttggtgacccagttcagaaaacggttacttctttctccatccttctccg
cacatccgattcttcctcttacctctgtcacaacacatgcagtcaccaag
aactatgactttctcttttctgaggttttttttttttcttcccagccttg
attttcctcaagtttgaattcctgttcccgtatccctgacaataaccccc
ctgcttttctcagtcctgctcctctctaatccatcttaagtaaacgccag
agcaggcttccctgacgctttgcctaattgaattgtatttccttgcacaa
acatctccaataactccccgtggcctgaaagatctcactcaaattccaca
ggctggcatttgaaagcttttgtcaatttggttctggtgacttcctggcc
ttgagtgagcttttagatctgtcaaccccgcaggaaaagactctttctcc
tctcgctctgcgccgcgcatcccaggtgccttctagtgctccggtggaca
agcactttctcccacgaacacgtaaaaactcattttcgacaagagtgact
gtctttaaaatggaataaaagatcacggagtgaaaaatgccatggggttg
gagagacagtcagtggtaggagcacaccgctgctcttggcagagagctgt
gctgatcctgacgcccgtgttggtccctcacaacctgtctgtactccagc
tgtgtatcagggcagctggccctcatgtgcagagactgttccttc
gaattccagggaaagaagctccttccccaagctttctgatgaagtcgctt
tctgcatttaattatttccactgtacctttggactaagtaactataggag
ggttttgttttagttttgccagtttatactatgatttcgatgtagatcat
ctgttgctttttaataagatcttgccactcacttgagaaatatgtgccat
aaaaataagtgcttctgtttcctaaaactcttctggatcttcttcagaag
tctctattgttcactccctcagagtaaagtaccgcgatcagaccacatgg
ggagaaaagttaaccctgactgcagaaggaaactgtcaagaggtaaacta
ttaaccacagcttctttctatctatgctggttaggggtacattccttccc
atcacatcccagttgagccacgttctcgttcattgtacacccctgtggta
tttggtttctcttgcgatctagggtgacctcagtcagtcagcgtggctaa
tcttatagccatctccaatgtccccctgatagcttgatctgactgtgata
atttgtcaccgtcaagctgtttaggcatttggctttggtcttctttttcc
tgcaggtgtcaaaaatgcaaaaagcacaatttataaaacctgagatgaca
gtgtcccatttgcactggccatagagtgccagaaggtaactttatttaga
gggccacagccttctctccagacaagctgctgaagttccagggtggtctg
aagagctgattcaaaaacataaaatgccactgtagcaacgtacagttcct
aaggcaaacatccagatgtgtcaataatctgtggaaattagaaacagatg
tgagcccttgttgaaaaacaaatatcatagaatttgtttcctttccttcg
cctcctcacacacttcaatgcagttcttccttggtttgttgtgttttctc
tttggagaaacaaaaagttgattttctatttttcatgcaggccgtgtggc
ttaatggattaaaatactccagggaagggaaaagaacagttaatttccgc
ccctcctttcattcccagcgggacttacccgagcacagtggactattttg
cagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_99766329_99767479
seq2: B6Ng01-172C11.b_45_1189

seq1  GAATTCATTCCCTTTAGCAGGGAGCTGAGGGCTGGAGACCGTTTATCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCCTTTAGCAGGGAGCTGAGGGCTGGAGACCGTTTATCTGT  50

seq1  CCACTCCTGTGTTGTAGCCCTGTGTGTGGCTTTATGCTTGGCTAAGTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCTGTGTTGTAGCCCTGTGTGTGGCTTTATGCTTGGCTAAGTGCC  100

seq1  TGTCATGTGTGTTGGTTGCCGGTACAACAGCTTGGCTCATTTAGTAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTGTGTTGGTTGCCGGTACAACAGCTTGGCTCATTTAGTAAAGT  150

seq1  AAGGAGCCCGGTTTTTCTTTGAGATAGCAGCCGGTAATATTCCACTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCCCGGTTTTTCTTTGAGATAGCAGCCGGTAATATTCCACTGGAG  200

seq1  CCCGCAGAGCTGCGGACCTTCAGATGTGCTCTGTCCAGGGTCCCCTGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCAGAGCTGCGGACCTTCAGATGTGCTCTGTCCAGGGTCCCCTGCAC  250

seq1  TGGTTTTCCAGCTTGGGGTCATGACTTGTCCCTTGCTTTGGTTCCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCCAGCTTGGGGTCATGACTTGTCCCTTGCTTTGGTTCCTTTGT  300

seq1  CATTTGCTTGGGGTTCCACTGTGTAGCTGAGGTGGGCTTCAAACTTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTTGGGGTTCCACTGTGTAGCTGAGGTGGGCTTCAAACTTGCCA  350

seq1  TCTTCCAGCCTCTGTCTCCTCGGTGTTGTGGTTACAAGTCCCCTGTCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGCCTCTGTCTCCTCGGTGTTGTGGTTACAAGTCCCCTGTCGTG  400

seq1  TTTGGTGACCCAGTTCAGAAAACGGTTACTTCTTTCTCCATCCTTCTCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGACCCAGTTCAGAAAACGGTTACTTCTTTCTCCATCCTTCTCCG  450

seq1  CACATCCGATTCTTCCTCTTACCTCTGTCACAACACATGCAGTCACCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCGATTCTTCCTCTTACCTCTGTCACAACACATGCAGTCACCAAG  500

seq1  AACTATGACTTTCTCTTTTCTGAGGTTTTTTTTTTTTCTTCCCAGCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGACTTTCTCTTTTCTGAGGTTTTTTTTTTTTCTTCCCAGCCTTG  550

seq1  ATTTTCCTCAAGTTTGAATTCCTGTTCCCGTATCCCTGACAATAACCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTCAAGTTTGAATTCCTGTTCCCGTATCCCTGACAATAACCCCC  600

seq1  CTGCTTTTCTCAGTCCTGCTCCTCTCTAATCCATCTTAAGTAAACGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTCTCAGTCCTGCTCCTCTCTAATCCATCTTAAGTAAACGCCAG  650

seq1  AGCAGGCTTCCCTGACGCTTTGCCTAATTGAATTGTATTTCCTTGCACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTTCCCTGACGCTTTGCCTAATTGAATTGTATTTCCTTGCACAA  700

seq1  ACATCTCCAATAACTCCCCGTGGCCTGAAAGATCTCACTCAAATTCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCCAATAACTCCCCGTGGCCTGAAAGATCTCACTCAAATTCCACA  750

seq1  GGCTGGCATTTGAAAGCTTTTGTCAATTTGGTTCTGGTGACTTCCTGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCATTTGAAAGCTTTTGTCAATTTGGTTCTGGTGACTTCCTGGCC  800

seq1  TTGAGTGAGCTTTTAGATCTGTCAACCCCGCAGG-AAAGACTCTTTCTCC  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGAGTGAGCTTTTAGATCTGTCAACCCCGCAGGAAAAGACTCTTTCTCC  850

seq1  TCTCGCTCTGCGCCGCGCATCCCAGGTGCCTTCTAGTGCTCCGGTGGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCTCTGCGCCGCGCATCCCAGGTGCCTTCTAGTGCTCCGGTGGACA  900

seq1  AGCACTTTCTCCCACGAACACGTAAAAACTCATTTTCGACAAAGAGTGAC  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCACTTTCTCCCACGAACACGTAAAAACTCATTTTCGAC-AAGAGTGAC  949

seq1  TGTCTTTAAAATGGAATAAAAGAATCACGGAGTGAAAAATGCCATGGGGT  999
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTCTTTAAAATGGAATAAAAG-ATCACGGAGTGAAAAATGCCATGGGGT  998

seq1  TGGAGAGACAAGTCAGTGGTTAGGAGCACA-CGCTGCTC-TGGCAGAGAG  1047
      ||||||||| ||||||||| |||||||||| |||||||| ||||||||||
seq2  TGGAGAGAC-AGTCAGTGG-TAGGAGCACACCGCTGCTCTTGGCAGAGAG  1046

seq1  CTGTGCTGGATTCCTGACGCCCGTGTTGGGCCCCTCACAA-CTGTCTGTA  1096
      ||||||||   |||||||||||||||| || ||||||||| |||||||| 
seq2  CTGTGCTG--ATCCTGACGCCCGTGTT-GGTCCCTCACAACCTGTCTGT-  1092

seq1  ACTCCAGCTGTGGAATCCAAGGGCAGCT-GCCCTCATGTGCAGAGACTGT  1145
      ||||||||||| | |||  ||||||||| |||||||||||||||||||||
seq2  ACTCCAGCTGT-GTATC--AGGGCAGCTGGCCCTCATGTGCAGAGACTGT  1139

seq1  CCCTTC  1151
       |||||
seq2  TCCTTC  1145

seq1: chr14_99879461_99880552
seq2: B6Ng01-172C11.g_67_1171 (reverse)

seq1  ATCTGCAAATTA--TCACTGTGCTTCGGTTAGTCCCGCTGGGTATGAAAG  48
      ||||||||| ||   |||||||||  ||| |||||||||||| |||||||
seq2  ATCTGCAAAATAGTCCACTGTGCTCGGGTAAGTCCCGCTGGGAATGAAAG  50

seq1  GAGGGGCGG-AATTAACTG-TCTTTT-CCTTCCCTGGAGTATTTT-ATCC  94
      ||||||||| ||||||||| |||||| |||||||||||||||||| ||||
seq2  GAGGGGCGGAAATTAACTGTTCTTTTCCCTTCCCTGGAGTATTTTAATCC  100

seq1  AT--AGCCACAC-GCCTGCATGAAAAATAG-AAATC-ACTTTTTGTTTCT  139
      ||  |||||||| ||||||||||||||||| ||||| |||||||||||||
seq2  ATTAAGCCACACGGCCTGCATGAAAAATAGAAAATCAACTTTTTGTTTCT  150

seq1  -CAAAGAGAAAAACACAACAAACCAAGGAAGAACTGCATTGAAGTGTGTG  188
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAG-AAAACACAACAAACCAAGGAAGAACTGCATTGAAGTGTGTG  199

seq1  AGGAGGCGAAGGAAAGGAAAC-AATTCTATGATATTTGTTTTTCAACAAG  237
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGAGGCGAAGGAAAGGAAACAAATTCTATGATATTTGTTTTTCAACAAG  249

seq1  GGCTCACATCTGTTTCTAA-TTCCACAGATTATTGACACATCTGGATGTT  286
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGCTCACATCTGTTTCTAATTTCCACAGATTATTGACACATCTGGATGTT  299

seq1  TGGCCTTAGGAACTGTACGTTGCTACAGTGGCA-TTTATGTTTTTGAATC  335
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  T-GCCTTAGGAACTGTACGTTGCTACAGTGGCATTTTATGTTTTTGAATC  348

seq1  AGCTCTTCAGACCACCCTGGAACTTCAGCAGCTTGTCTGGAGAGAAGGCT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTCAGACCACCCTGGAACTTCAGCAGCTTGTCTGGAGAGAAGGCT  398

seq1  GTGGCCCTCTAAATAAAGTTACCTTCTGGCACTCTATGGCCAGTGCAAAT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCTCTAAATAAAGTTACCTTCTGGCACTCTATGGCCAGTGCAAAT  448

seq1  GGGACACTGTCATCTCAGGTTTTATAAATTGTGCTTTTTGCATTTTTGAC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACTGTCATCTCAGGTTTTATAAATTGTGCTTTTTGCATTTTTGAC  498

seq1  ACCTGCAGGAAAAAGAAGACCAAAGCCAAATGCCTAAACAGCTTGACGGT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAGGAAAAAGAAGACCAAAGCCAAATGCCTAAACAGCTTGACGGT  548

seq1  GACAAATTATCACAGTCAGATCAAGCTATCAGGGGGACATTGGAGATGGC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATTATCACAGTCAGATCAAGCTATCAGGGGGACATTGGAGATGGC  598

seq1  TATAAGATTAGCCACGCTGACTGACTGAGGTCACCCTAGATCGCAAGAGA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATTAGCCACGCTGACTGACTGAGGTCACCCTAGATCGCAAGAGA  648

seq1  AACCAAATACCACAGGGGTGTACAATGAACGAGAACGTGGCTCAACTGGG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATACCACAGGGGTGTACAATGAACGAGAACGTGGCTCAACTGGG  698

seq1  ATGTGATGGGAAGGAATGTACCCCTAACCAGCATAGATAGAAAGAAGCTG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATGGGAAGGAATGTACCCCTAACCAGCATAGATAGAAAGAAGCTG  748

seq1  TGGTTAATAGTTTACCTCTTGACAGTTTCCTTCTGCAGTCAGGGTTAACT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAATAGTTTACCTCTTGACAGTTTCCTTCTGCAGTCAGGGTTAACT  798

seq1  TTTCTCCCCATGTGGTCTGATCGCGGTACTTTACTCTGAGGGAGTGAACA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCCATGTGGTCTGATCGCGGTACTTTACTCTGAGGGAGTGAACA  848

seq1  ATAGAGACTTCTGAAGAAGATCCAGAAGAGTTTTAGGAAACAGAAGCACT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGACTTCTGAAGAAGATCCAGAAGAGTTTTAGGAAACAGAAGCACT  898

seq1  TATTTTTATGGCACATATTTCTCAAGTGAGTGGCAAGATCTTATTAAAAA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATGGCACATATTTCTCAAGTGAGTGGCAAGATCTTATTAAAAA  948

seq1  GCAACAGATGATCTACATCGAAATCATAGTATAAACTGGCAAAACTAAAA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGATGATCTACATCGAAATCATAGTATAAACTGGCAAAACTAAAA  998

seq1  CAAAACCCTCCTATAGTTACTTAGTCCAAAGGTACAGTGGAAATAATTAA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCTCCTATAGTTACTTAGTCCAAAGGTACAGTGGAAATAATTAA  1048

seq1  ATGCAGAAAGCGACTTCATCAGAAAGCTTGGGGAAGGAGCTTCTTTCCCT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAAGCGACTTCATCAGAAAGCTTGGGGAAGGAGCTTCTTTCCCT  1098

seq1  GGAATTC  1092
      |||||||
seq2  GGAATTC  1105