BAC Information

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BAC

Clone NameB6Ng01-172F09
Chromosome14 (Build37)
Map Location 80,351,287 - 80,352,433
singlet/doubletsinglet
Overlap geneEG629734
Upstream gene1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8
Downstream geneOlfm4, LOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172F09.bB6Ng01-172F09.g
ACCGA000982GA000983
length6881,146
definitionB6Ng01-172F09.b B6Ng01-172F09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaccattattttctttttctttttttgtttttttgagacagggtt
tctctgtatagccctggctgtcctggaactcacgtttgtagaccaggctg
gcctcgaactcagaaatccacctgcctctgcctcccgagtgctgggatta
aaggtgtgcaccaccatgcccagcgttattttcgttttcttgcttttttt
ttttttttttttttttttgagaggagatcatcctgtgtagcccacaccag
tattgagcttccacttcccaagtgctgggatcacaaatgaacatgtcact
gtgctcagcggaactcaccatttttttctttttctttttattggttattt
atttcatttatatttccaatgctatcccaaaagtcccccacacgctcccc
cacccactcccccaccacccactcccacttcttggccctgtcgttcccct
gtactgaggcatataaagtttgcacgactaatgggtctctctttccactg
atggccgactaggccattttctgattcatatgcagctagagactccagct
ccaggagagtactggttagttcatattgttgttccacctataggattgca
gatccctttagctccttgggtactttctctagctcctccattgggggccc
tgtggtccatccaatagctgactgtgagcatccatttc
gaattctttgaaaagaaaaatctagccctagatacagaatactgaaactg
cagaacaacacaaaaataagacatgcaagaatacacacactacccacgaa
agaggggcagttagtgagctgagcgctcacagcaaccagaaggccggagc
tcatcactggctactgaaagggaatgacctagaattggatgatgttcctc
aacaaattctaaaaatctgaaggatgtataattcaacctggaaaaaaatg
tacctcaaagtatctgacaaagaaaatattaagaggagaggaaatgataa
acaggaatcgactctgagcacatatgtaccatgtaatatataaaacacat
aaaaacaggggctggagagagggttcgacagttataagtgctttctgcgt
atagaagacctcagtacacttcctgggatccttgtctgtctggtggctca
caacaaagctgtaaccccagccccagctctggggctctggtgcctttgtc
cccatgccaaccacctgcacacacacacacacacacacacacacacacat
ccccatacaggcacacagacagagacacatgataagaaattaataataat
aataataataatctttttaaagtacataaaaacataaattacaatctgca
tggcataacatgagaaggagcctaactcactggtctcgtacaacacttct
ggttgcctctggttgccttctttgtggtagtaagaaccactgagctacat
tccaagctgaatgcccttctttaacttttctcaaaatattatggggtgaa
atgtgagagcttacaggataatgtatatagaataacatgcacataatttt
aaatagtccctggaacaaattttgacaattatatatagccataatgacca
actaaaaattgtatttctttttttcacttcagaaaattccttgtgtcttt
tcctggcaatatgcctttccctggagaacaccactgttctgactttcaat
aatcttagatttgtatgtctgtgctgactttcatgtaaatggagtcaata
tgacttattcttctgatccagggtgctcaatataatattctcaggattca
tctttattcatatgatagaatcgggccttggtgttgccagtagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80351287_80352433
seq2: B6Ng01-172F09.g_65_1210 (reverse)

seq1  ATGCTACTTGGCAACACAAAGG-CCGA-TCTATCAATATGAAATAAAGAT  48
      ||||||| ||||||||| |||| |||| |||||| ||||| |||||||||
seq2  ATGCTAC-TGGCAACACCAAGGCCCGATTCTATC-ATATG-AATAAAGAT  47

seq1  GAATCTTGAGAATATTATATTGAGCACCTGGGATCAGGAAGAATAGTTCA  98
      ||||| ||||||||||||||||||||||  |||||| ||||||||  |||
seq2  GAATCCTGAGAATATTATATTGAGCACCCTGGATCA-GAAGAATAAGTCA  96

seq1  TA-TGACTCCATTTACATGAAGTTCAGCAACAGACATACAAAATCTAAGA  147
      || ||||||||||||||||||  ||||| |||||||||| ||||||||||
seq2  TATTGACTCCATTTACATGAAAGTCAGC-ACAGACATAC-AAATCTAAGA  144

seq1  TTA-TGAAAGTCAGAACAGTGGTTGTCTCCAGGG-AAGGCATATTGCCAG  195
      ||| |||||||||||||||||||  ||||||||| |||||||||||||||
seq2  TTATTGAAAGTCAGAACAGTGGTGTTCTCCAGGGAAAGGCATATTGCCAG  194

seq1  GAAAAGACACAAGGGAATTTTCTGAAGTGAAAAAAAGAAATACAATTTTT  245
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACACAA-GGAATTTTCTGAAGTGAAAAAAAGAAATACAATTTTT  243

seq1  AGTTGGTCATTATGGCTATATATAATTGTCAAAATTTGTTCCAGGGACTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTCATTATGGCTATATATAATTGTCAAAATTTGTTCCAGGGACTA  293

seq1  TTTAAAATTATGTGCATGTTATTCTATATACATTATCCTGTAAGCTCTCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTATGTGCATGTTATTCTATATACATTATCCTGTAAGCTCTCA  343

seq1  CATTTCA-CCCATAATATTTTGAGAAAAGTTAAAGAAGGGCATTCAGCTT  394
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACCCCATAATATTTTGAGAAAAGTTAAAGAAGGGCATTCAGCTT  393

seq1  GGAATGTAGCTCAGTGGTTCTTACTACCACAAAGAAGGCAACCAGAGGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTAGCTCAGTGGTTCTTACTACCACAAAGAAGGCAACCAGAGGCA  443

seq1  ACCAGAAGTGTTGTACGAGACCAGTGAGTTAGGCTCCTTCTCATGTTATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGTGTTGTACGAGACCAGTGAGTTAGGCTCCTTCTCATGTTATG  493

seq1  CCATGCAGATTGTAATTTATGTTTTTATGTACTTTAAAAAGATTATTATT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCAGATTGTAATTTATGTTTTTATGTACTTTAAAAAGATTATTATT  543

seq1  ATTATTATTATTAATTTCTTATCATGTGTCTCTGTCTGTGTGCCTGTATG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTAATTTCTTATCATGTGTCTCTGTCTGTGTGCCTGTATG  593

seq1  GGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTGGTTGGCAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTGGTTGGCAT  643

seq1  GGGGACAAAGGCACCAGAGCCCCAGAGCTGGGGCTGGGGTTACAGCTTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAAAGGCACCAGAGCCCCAGAGCTGGGGCTGGGGTTACAGCTTTG  693

seq1  TTGTGAGCCACCAGACAGACAAGGATCCCAGGAAGTGTACTGAGGTCTTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCCACCAGACAGACAAGGATCCCAGGAAGTGTACTGAGGTCTTC  743

seq1  TATACGCAGAAAGCACTTATAACTGTCGAACCCTCTCTCCAGCCCCTGTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGCAGAAAGCACTTATAACTGTCGAACCCTCTCTCCAGCCCCTGTT  793

seq1  TTTATGTGTTTTATATATTACATGGTACATATGTGCTCAGAGTCGATTCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGTTTTATATATTACATGGTACATATGTGCTCAGAGTCGATTCC  843

seq1  TGTTTATCATTTCCTCTCCTCTTAATATTTTCTTTGTCAGATACTTTGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCATTTCCTCTCCTCTTAATATTTTCTTTGTCAGATACTTTGAG  893

seq1  GTACATTTTTTTCCAGGTTGAATTATACATCCTTCAGATTTTTAGAATTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTTTTTCCAGGTTGAATTATACATCCTTCAGATTTTTAGAATTT  943

seq1  GTTGAGGAACATCATCCAATTCTAGGTCATTCCCTTTCAGTAGCCAGTGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGAACATCATCCAATTCTAGGTCATTCCCTTTCAGTAGCCAGTGA  993

seq1  TGAGCTCCGGCCTTCTGGTTGCTGTGAGCGCTCAGCTCACTAACTGCCCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCGGCCTTCTGGTTGCTGTGAGCGCTCAGCTCACTAACTGCCCC  1043

seq1  TCTTTCGTGGGTAGTGTGTGTATTCTTGCATGTCTTATTTTTGTGTTGTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCGTGGGTAGTGTGTGTATTCTTGCATGTCTTATTTTTGTGTTGTT  1093

seq1  CTGCAGTTTCAGTATTCTGTATCTAGGGCTAGATTTTTCTTTTCAAAGAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTTTCAGTATTCTGTATCTAGGGCTAGATTTTTCTTTTCAAAGAA  1143

seq1  TTC  1147
      |||
seq2  TTC  1146