BAC Information

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BAC

Clone NameB6Ng01-173K16
Chromosome14 (Build37)
Map Location 46,382,912 - 46,523,847
singlet/doubletdoublet
Overlap geneLOC666834
Upstream genePtgdr, Ptger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379
Downstream geneLOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173K16.bB6Ng01-173K16.g
ACCGA001953GA001954
length1,1241,191
definitionB6Ng01-173K16.b B6Ng01-173K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,522,722 - 46,523,847)(46,382,912 - 46,384,071)
sequence
gaattctcagctggtaaactttaagacattccataagtattcctttccat
cagtttgtaaaaacaagaaaaatcccaaagtaaagaaaccacaagcatta
cagtagcgatacagattgtttaaaagttttctaaggttttggaagttctt
aactgcacatctggttaagctttctctctagtgagatattataagacatt
tgtcttatctaacttccgaactgagttttctgcctaaatgtactaaattt
tgagtggccaatagatggatcagtttttaaactcttctataacatcacag
atttctgaagacagaacatttacaactgattcatgattttgtaaatattt
tcccaattagagctgaaaaggatgtctttgcctcaactcctgggtgagaa
aactgaaatatagtctatacaaagaactcagcaaggtgttgcaagatcta
gagccccccaggctgtcctagctgcatgcgccagccatggtccactttcc
catcatatccagccagtgatgggtggctctgtattatagaagaagcaaca
cagagtggagatactgctcagtgataacatttactgggcaaatatgggaa
acagagtttagattcccagcatccacataaaacccaagtaggcacagaga
gctgattgcaatgccagcattggggaggtacaaataggagattccctgga
gcaagctagctaattagactagctctgagtttcaagtgagagaccccgcc
tcaatatgtagggtggagagtgactccaaaagacacctgactctcatcaa
cctctgactatcatatacacatgtgcctttgttcctgcacacatatgcac
atgcatccatgtatatgcaaatatgtacacatgaatatatgcataccact
tatgcatacacacaatagaaaaagaaacagacagctgggtcctccattga
agaatatgctagaatctgagcctgtatctcatacccactgaagctgctgc
attataacagtcatcttataaccgttaagtctcacacttggctgttcatt
ccggcctgaccagcttaaagtcatcttcagacaagcctttgtaagatata
cctcagaataaattcgcttctcca
gaattccacacccctaagcccctcaccccataaaaacccctagctttcga
acctcgtacgaggccgacatccgttatctcctgtgtgggatgcatgtcgg
tccagagctccgtcattaaacgacctcatgtaattacagcaagatgggtc
ctcgtgtttctttgggtgctctcacactcccgagactagagtgggggtcc
ccgaaagggggtcttacattttctttgctgtctagctctttttctcacaa
aagtcctctgccctgtgttcctatgggcagtggccacagtgtgatactga
cacatagaagagacattagtggccaccctgtgctaccagttggctacact
gatttgctgtatcttgcttcttcactgaggtaggtgcttccagggtgcca
ttagctatagtactggctcatcaggatggagactctggtcctccaacctg
gctgcgttgtgttgagggaaccgcttctctcattccagcccagttttagg
tacttcctctgctgctgctgtcgctgagaatgacaggggcttctctgggc
tggcagagttttagttacatgggactgagatgcaatgggccctgctattt
tcactttcagatattactgaggccccacggctgacttaggatacagattt
gacgcacagatattagatctcgcatcacttaaacaacctcattagcttcc
agctgaatgtttgcaggttctctgtctacctgcatattttcctgagtttc
ctggttagtatcttttattagctaaacttgtgctaccctccactgctaca
tccactccagttcgtgactcaaagtgacaggcctaagaaagcctggaaag
cagtcccgaggcagagtttcacggaaaacttagcctcctgggaaccttgg
cattcccatagcccgtatactccaaacctgttccccgtgttagtctgggg
tatggatctctgtgctctcctttcagaatcttttattaaaagttgccttt
aaggattgaatttttgacattatagctaaagcctcaactagtgtttccaa
agtgctccttgggaagttcctttgaagcaggatcctgagctggggaaatt
ccagtataggatgctacctattcgtaaccatttcacctctcagtacagaa
acggtgaaaatatactcaggccatatcactaccttgaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_46522722_46523847
seq2: B6Ng01-173K16.b_44_1167 (reverse)

seq1  TGGAGAGCTTGAGAGCG-ATTTAATCTGAG---TATC-TACAAAGGCCTG  45
      ||||||       |||| ||||| ||||||   |||| ||||||||| ||
seq2  TGGAGA-------AGCGAATTTATTCTGAGGTATATCTTACAAAGGCTTG  43

seq1  TCTGGAAGATGACTTTAAGCTGGTCAGGCCCGGAGTG-ACAGCCAAGTGT  94
      ||| |||||||||||||||||||||||| ||||| || ||||||||||||
seq2  TCT-GAAGATGACTTTAAGCTGGTCAGG-CCGGAATGAACAGCCAAGTGT  91

seq1  GAGACTTAAC-GTTATAAGATGACTGTTATAATGCAGCAGCTTCAGTGGG  143
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTAACGGTTATAAGATGACTGTTATAATGCAGCAGCTTCAGTGGG  141

seq1  TATGAGATACAGGCTCAGATTCTAGCATATTCTTCAATGGAGGACCCAGC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATACAGGCTCAGATTCTAGCATATTCTTCAATGGAGGACCCAGC  191

seq1  TGTCTGTTTCTTTTTCTATTTGTGTGTATGCATAAGTGGTATGCATATAT  243
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTCTGTTTCTTTTTCTA-TTGTGTGTATGCATAAGTGGTATGCATATAT  240

seq1  TCATGTGTACATATTTGCATATACATGGATGCATGTGCATATGTGTGCAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTACATATTTGCATATACATGGATGCATGTGCATATGTGTGCAG  290

seq1  GAACAAAGGCACATGTGTATATGATAGTCAGAGGTTGATGAGAGTCAGGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGGCACATGTGTATATGATAGTCAGAGGTTGATGAGAGTCAGGT  340

seq1  GTCTTTTGGAGTCACTCTCCACCCTACATATTGAGGCGGGGTCTCTCACT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGGAGTCACTCTCCACCCTACATATTGAGGCGGGGTCTCTCACT  390

seq1  TG-AACTCAGAGCTAGTCTAATTAGCTAGCTTGCTCCAGGGAATCTCCTA  442
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTCAGAGCTAGTCTAATTAGCTAGCTTGCTCCAGGGAATCTCCTA  440

seq1  TTTGTACCTCCCCAATGCTGGCATTGCAATCAGCTCTCTGTGCCTACTTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACCTCCCCAATGCTGGCATTGCAATCAGCTCTCTGTGCCTACTTG  490

seq1  GGTTTTATGTGGATGCTGGGAATCTAAACTCTGTTTCCCATATTTGCCCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATGTGGATGCTGGGAATCTAAACTCTGTTTCCCATATTTGCCCA  540

seq1  GTAAATGTTATCACTGAGCAGTATCTCCACTCTGTGTTGCTTCTTCTATA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGTTATCACTGAGCAGTATCTCCACTCTGTGTTGCTTCTTCTATA  590

seq1  ATACAGAGCCACCCATCACTGGCTGGATATGATGGGAAAGTGGACCATGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGCCACCCATCACTGGCTGGATATGATGGGAAAGTGGACCATGG  640

seq1  CTGGCGCATGCAGCTAGGACAGCCTGGGGGGCTCTAGATCTTGCAACACC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGCATGCAGCTAGGACAGCCTGGGGGGCTCTAGATCTTGCAACACC  690

seq1  TTGCTGAGTTCTTTGTATAGACTATATTTCAGTTTTCTCACCCAGGAGTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGTTCTTTGTATAGACTATATTTCAGTTTTCTCACCCAGGAGTT  740

seq1  GAGGCAAAGACATCCTTTTCAGCTCTAATTGGGAAAATATTTACAAAATC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAAGACATCCTTTTCAGCTCTAATTGGGAAAATATTTACAAAATC  790

seq1  ATGAATCAGTTGTAAATGTTCTGTCTTCAGAAATCTGTGATGTTATAGAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCAGTTGTAAATGTTCTGTCTTCAGAAATCTGTGATGTTATAGAA  840

seq1  GAGTTTAAAAACTGATCCATCTATTGGCCACTCAAAATTTAGTACATTTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAAAAACTGATCCATCTATTGGCCACTCAAAATTTAGTACATTTA  890

seq1  GGCAGAAAACTCAGTTCGGAAGTTAGATAAGACAAATGTCTTATAATATC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAAACTCAGTTCGGAAGTTAGATAAGACAAATGTCTTATAATATC  940

seq1  TCACTAGAGAGAAAGCTTAACCAGATGTGCAGTTAAGAACTTCCAAAACC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGAGAGAAAGCTTAACCAGATGTGCAGTTAAGAACTTCCAAAACC  990

seq1  TTAGAAAACTTTTAAACAATCTGTATCGCTACTGTAATGCTTGTGGTTTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAACTTTTAAACAATCTGTATCGCTACTGTAATGCTTGTGGTTTC  1040

seq1  TTTACTTTGGGATTTTTCTTGTTTTTACAAACTGATGGAAAGGAATACTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTGGGATTTTTCTTGTTTTTACAAACTGATGGAAAGGAATACTT  1090

seq1  ATGGAATGTCTTAAAGTTTACCAGCTGAGAATTC  1126
      ||||||||||||||||||||||||||||||||||
seq2  ATGGAATGTCTTAAAGTTTACCAGCTGAGAATTC  1124

seq1: chr14_46382912_46384071
seq2: B6Ng01-173K16.g_69_1259

seq1  GAATTCCACACCCCTAAGCCCCTCACCCCATAAAAACCCCTAGCTTTCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCCTAAGCCCCTCACCCCATAAAAACCCCTAGCTTTCGA  50

seq1  ACCTCGTACGAGGCCGACATCCGTTATCTCCTGTGTGGGATGCATGTCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGTACGAGGCCGACATCCGTTATCTCCTGTGTGGGATGCATGTCGG  100

seq1  TCCAGAGCTCCGTCATTAAACGACCTCATGTAATTACAGCAAGATGGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGCTCCGTCATTAAACGACCTCATGTAATTACAGCAAGATGGGTC  150

seq1  CTCGTGTTTCTTTGGGTGCTCTCACACTCCCGAGACTAGAGTGGGGGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGTTTCTTTGGGTGCTCTCACACTCCCGAGACTAGAGTGGGGGTCC  200

seq1  CCGAAAGGGGGTCTTACATTTTCTTTGCTGTCTAGCTCTTTTTCTCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAAGGGGGTCTTACATTTTCTTTGCTGTCTAGCTCTTTTTCTCACAA  250

seq1  AAGTCCTCTGCCCTGTGTTCCTATGGGCAGTGGCCACAGTGTGATACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTCTGCCCTGTGTTCCTATGGGCAGTGGCCACAGTGTGATACTGA  300

seq1  CACATAGAAGAGACATTAGTGGCCACCCTGTGCTACCAGTTGGCTACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGAAGAGACATTAGTGGCCACCCTGTGCTACCAGTTGGCTACACT  350

seq1  GATTTGCTGTATCTTGCTTCTTCACTGAGGTAGGTGCTTCCAGGGTGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCTGTATCTTGCTTCTTCACTGAGGTAGGTGCTTCCAGGGTGCCA  400

seq1  TTAGCTATAGTACTGGCTCATCAGGATGGAGACTCTGGTCCTCCAACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTATAGTACTGGCTCATCAGGATGGAGACTCTGGTCCTCCAACCTG  450

seq1  GCTGCGTTGTGTTGAGGGAACCGCTTCTCTCATTCCAGCCCAGTTTTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGTTGTGTTGAGGGAACCGCTTCTCTCATTCCAGCCCAGTTTTAGG  500

seq1  TACTTCCTCTGCTGCTGCTGTCGCTGAGAATGACAGGGGCTTCTCTGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCTCTGCTGCTGCTGTCGCTGAGAATGACAGGGGCTTCTCTGGGC  550

seq1  TGGCAGAGTTTTAGTTACATGGGACTGAGATGCAATGGGCCCTGCTA-TT  599
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGCAGAGTTTTAGTTACATGGGACTGAGATGCAATGGGCCCTGCTATTT  600

seq1  TCAC-TTCAGATATTACTGAGGCCCCACGGCTGACTTAGGATACAGATTT  648
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCAGATATTACTGAGGCCCCACGGCTGACTTAGGATACAGATTT  650

seq1  GACGCACAGATATTAGATCTCGCATCACTTAAACAACCTCATTAGCTTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCACAGATATTAGATCTCGCATCACTTAAACAACCTCATTAGCTTCC  700

seq1  AGCTGAATGTTTGCAGGTTCTCTGTCTACCTGCATATTTTCCTGAGTTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATGTTTGCAGGTTCTCTGTCTACCTGCATATTTTCCTGAGTTTC  750

seq1  CTGGTTAGTATCTTTTATTAGCTAAACTTGTGCTACCCTCCACTGCTACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAGTATCTTTTATTAGCTAAACTTGTGCTACCCTCCACTGCTACA  800

seq1  TCCACTCCAG-TCGTGACTC-AAGTGACAGGCCT-AGAAAGCCTGG-AAG  844
      |||||||||| ||||||||| ||||||||||||| ||||||||||| |||
seq2  TCCACTCCAGTTCGTGACTCAAAGTGACAGGCCTAAGAAAGCCTGGAAAG  850

seq1  CAGTCCCGAGGCAGAGTTTCACGG-AAACTTAGCCTCCT-GGAACCTTGG  892
      |||||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  CAGTCCCGAGGCAGAGTTTCACGGAAAACTTAGCCTCCTGGGAACCTTGG  900

seq1  CATTCCCATAGCCCGTATACTCCAAACCTG-TCCCCGTGTTAGTCTGGTG  941
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  CATTCCCATAGCCCGTATACTCCAAACCTGTTCCCCGTGTTAGTCTGGGG  950

seq1  TATGGATCTCTGTGCTCT-CTTTCAGTATTCTTTTATTATAAG-TGCCTT  989
      |||||||||||||||||| ||||||| | |||||||||| ||| ||||||
seq2  TATGGATCTCTGTGCTCTCCTTTCAG-AATCTTTTATTAAAAGTTGCCTT  999

seq1  TAAGGATTG-ATTTTTGACA-TATAGCT-AAGCCTCCACCAGTG-TTCCA  1035
      ||||||||| |||||||||| ||||||| ||||||| || |||| |||||
seq2  TAAGGATTGAATTTTTGACATTATAGCTAAAGCCTCAACTAGTGTTTCCA  1049

seq1  ATGT----CCTGGGAAGT--CCTTGAAGCA-GACCCTGAGCTGGG--AAT  1076
      | ||    | ||||||||  | |||||||| || |||||||||||  |||
seq2  AAGTGCTCCTTGGGAAGTTCCTTTGAAGCAGGATCCTGAGCTGGGGAAAT  1099

seq1  T-CAGTA-AGAATGTAACCTATTCAGTAAC--ATTCACCTCT-AGT--AG  1119
      | ||||| || |||  |||||||| |||||   ||||||||| |||  ||
seq2  TCCAGTATAGGATGCTACCTATTC-GTAACCATTTCACCTCTCAGTACAG  1148

seq1  AGACAGTGAAA--ATAATCAGGCATTATAATTTACTTGAATAA  1160
      | || ||||||  ||| ||||||  ||| | |  |||||||||
seq2  AAACGGTGAAAATATACTCAGGCCATATCACTACCTTGAATAA  1191