BAC Information

Click to search

BAC

Clone NameB6Ng01-174C21
Chromosome14 (Build37)
Map Location 77,480,464 - 77,693,493
singlet/doubletdoublet
Overlap geneCcdc122, D230005D02Rik, LOC100043755
Upstream gene1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik
Downstream geneLOC676171, EG629678, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174C21.bB6Ng01-174C21.g
ACCGA002332GA002333
length1,0761,093
definitionB6Ng01-174C21.b B6Ng01-174C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,480,464 - 77,481,535)(77,692,424 - 77,693,493)
sequence
gaattcttttgtaactgtgatgcccaggctccttgatcctgagatcccgg
acaaccttgaatcacagcattgtatttatcagtgttttcctaacttacag
catgcaggccaggccaagccagacaggtcatatagtgtggagctttccca
atctctactctctacttctcctctctaaaaaaacctccctttgttctcag
gatcgaaagggaactgggtacctaaggctcccacacgtgctttcagagca
cacccatggctgtctatggtatgatgctgtaactctcctactttaagtcc
ctcattatggctggctatgaccgtgaacctgggactctcctaataattat
gggactctctcattctgaagagcaaattcatgttagctttattcagtgaa
cctgttttcttttgaaatgtatgatagttcttatgtattttcattgtgct
ggacacaattccatcccttgagcctcactctggtcatatggctatctaga
gtgttgcccaagtgagtcaagcaaaggcttaggagagttcttacatagtc
atacttccacttttctgtgtttgctgttgtgagaaggatgtgtctctgca
gcttaatgcttataaacaagaccaagacatctcagccaggccaatgaaag
cgagcctaaatggtcttcaaccagccattgctcatttaaaacaaaaacca
gtcatttccttcacccactcctctgcacgctacctcttcccccttgagtg
gtttcttctcttccccagtcagtccacatttctgctttctctttacatgc
atttcattatctcctctatttcccacctctcttaggatatcttcttcctc
tcttgtgatcctctttctactttcataacctacacatactcagattcacg
cacacacagagacacacgcacacacgtacactcttttccccccatacaag
agaaaatgtgtcttgtctttctgaaactagtttaatttactcatacaatg
gtttccagttgcatacattttccctgaaaatgccataatttcaatttttt
ctggtattgctacataaaataatgtt
gaattcaatattctttttacattattaaaggaatacatcagcctcaaata
acttatttcatgccggatgcacaactactccatgatgtagtaatcattat
ctacaatttatagatgagaaagctgatattcagatatttcagctgaatcg
tttgctgcactaagaattgggagagctgctgttcaatataaacccagctg
cacgtaaagccatgttcacagaaccaaaccagctcctgatggaatatggg
tcctcaaacttttgtatgagtttcagcccaaaaaataaactctgagctta
actgtcttatggattattcaattcatttgggaccagtttattacagtctc
ctcaccgtgtagtcagaaatggccttttctttttaatggtgactatttaa
aaaggcagttcatttcaagacttaattgaagaatcaaatgtaaaggaatt
tgcacaccaaataataatttttctattaagggttttcttggaacattacc
atggaaatcaaaggaaaggttacgttttcataaacaaaaatcttcacata
acaccaatcagtatcctccattgtcagagcacagaactcttgtttacatt
tgctctcatatgatgagagacaataacgtgcccttcacacattccatgga
aataactttccattaaaatgacatttaattgccaattctttggaagttct
gagtgctatagaaactggtttttgtttaaacaagtttgattggatcctaa
tcccaaattattaagctgaattctaaatgaagagaaggattttttttctt
tctttctcagtgtcttagtgttttactgctgtgaacagacaccatgacca
aggcaactcttttttttttttttttccaagacagggttttctctttggta
tcctgggctgtcctggaaactcactctgtagaccaagctggcctcaaact
cagaaatcttgcctgctctctgccctcccaagtgcttgggattaaaaggt
aatgcgcccaccaactggctcagcaaaggcaactcttataaagggattaa
tatataatttggggaatggcttacagggtctcagaggttcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_77480464_77481535
seq2: B6Ng01-174C21.b_44_1119

seq1  GAATTCTTTTGTAACTGTGATGCCCAGGCTCCTTGATCCTGAGATCCCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTAACTGTGATGCCCAGGCTCCTTGATCCTGAGATCCCGG  50

seq1  ACAACCTTGAATCACAGCATTGTATTTATCAGTGTTTTCCTAACTTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTTGAATCACAGCATTGTATTTATCAGTGTTTTCCTAACTTACAG  100

seq1  CATGCAGGCCAGGCCAAGCCAGACAGGTCATATAGTGTGGAGCTTTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGCCAGGCCAAGCCAGACAGGTCATATAGTGTGGAGCTTTCCCA  150

seq1  ATCTCTACTCTCTACTTCTCCTCTCTAAAAAAACCTCCCTTTGTTCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTACTCTCTACTTCTCCTCTCTAAAAAAACCTCCCTTTGTTCTCAG  200

seq1  GATCGAAAGGGAACTGGGTACCTAAGGCTCCCACACGTGCTTTCAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGAAAGGGAACTGGGTACCTAAGGCTCCCACACGTGCTTTCAGAGCA  250

seq1  CACCCATGGCTGTCTATGGTATGATGCTGTAACTCTCCTACTTTAAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATGGCTGTCTATGGTATGATGCTGTAACTCTCCTACTTTAAGTCC  300

seq1  CTCATTATGGCTGGCTATGACCGTGAACCTGGGACTCTCCTAATAATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATGGCTGGCTATGACCGTGAACCTGGGACTCTCCTAATAATTAT  350

seq1  GGGACTCTCTCATTCTGAAGAGCAAATTCATGTTAGCTTTATTCAGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCTCTCATTCTGAAGAGCAAATTCATGTTAGCTTTATTCAGTGAA  400

seq1  CCTGTTTTCTTTTGAAATGTATGATAGTTCTTATGTATTTTCATTGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTCTTTTGAAATGTATGATAGTTCTTATGTATTTTCATTGTGCT  450

seq1  GGACACAATTCCATCCCTTGAGCCTCACTCTGGTCATATGGCTATCTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAATTCCATCCCTTGAGCCTCACTCTGGTCATATGGCTATCTAGA  500

seq1  GTGTTGCCCAAGTGAGTCAAGCAAAGGCTTAGGAGAGTTCTTACATAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCCCAAGTGAGTCAAGCAAAGGCTTAGGAGAGTTCTTACATAGTC  550

seq1  ATACTTCCACTTTTCTGTGTTTGCTGTTGTGAGAAGGATGTGTCTCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCCACTTTTCTGTGTTTGCTGTTGTGAGAAGGATGTGTCTCTGCA  600

seq1  GCTTAATGCTTATAAACAAGACCAAGACATCTCAGCCAGGCCAATGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATGCTTATAAACAAGACCAAGACATCTCAGCCAGGCCAATGAAAG  650

seq1  CGAGCCTAAATGGTCTTCAACCAGCCATTGCTCATTTAAAACAAAAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCTAAATGGTCTTCAACCAGCCATTGCTCATTTAAAACAAAAACCA  700

seq1  GTCATTTCCTTCACCCACTCCTCTGCACGCTACCTCTTCCCCCTTGAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTCCTTCACCCACTCCTCTGCACGCTACCTCTTCCCCCTTGAGTG  750

seq1  GTTTCTTCTCTTCCCCAGTCAGTCCACATTTCTGCTTTCTCTTTACATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCTCTTCCCCAGTCAGTCCACATTTCTGCTTTCTCTTTACATGC  800

seq1  ATTTCATTATCTCCTCTATTTCCCACCTCTCTTAGGATATCTTCTTCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTATCTCCTCTATTTCCCACCTCTCTTAGGATATCTTCTTCCTC  850

seq1  TCTTGTGATCCTCTTTCTACTTTCATAACCTACACATACTCAGATTCACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGATCCTCTTTCTACTTTCATAACCTACACATACTCAGATTCACG  900

seq1  CACACACAGAGACACACGCACACACGTACACTC-TTTCCCCCCATACAAG  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CACACACAGAGACACACGCACACACGTACACTCTTTTCCCCCCATACAAG  950

seq1  AGAAAATGTGTCTTGTCTTTCTGAAACTAGTTTATTTTACTCAATACAAT  999
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  AGAAAATGTGTCTTGTCTTTCTGAAACTAGTTTAATTTACTC-ATACAAT  999

seq1  GGTTTCCAGTTGCATACATTTT-CCTGAAAATGCCATAA-TTCAA-TTTT  1046
      |||||||||||||||||||||| |||||||||||||||| ||||| ||||
seq2  GGTTTCCAGTTGCATACATTTTCCCTGAAAATGCCATAATTTCAATTTTT  1049

seq1  TCT-GTATTGCTACATAAAATTATGTT  1072
      ||| ||||||||||||||||| |||||
seq2  TCTGGTATTGCTACATAAAATAATGTT  1076

seq1: chr14_77692424_77693493
seq2: B6Ng01-174C21.g_66_1158 (reverse)

seq1  ACTGAACCTCT--GAACCTGTAAGCCAT--CCCCAATTATATATTA--TC  44
      |||||||||||  || ||||||||||||  ||| ||||||||||||   |
seq2  ACTGAACCTCTGAGACCCTGTAAGCCATTCCCCAAATTATATATTAATCC  50

seq1  CTTTATAAGAGTTGCC-TTGCTG-GGCAG-TGGT-GGCGCAT--GCCTTT  88
      |||||||||||||||| |||||| | ||| |||| |||||||   | |||
seq2  CTTTATAAGAGTTGCCTTTGCTGAGCCAGTTGGTGGGCGCATTACCTTTT  100

seq1  AATCCC-AGCACTTGGGA-GGCAGAG-GCAGGC-AGATTTCTGAGTTTGA  134
      |||||| ||||||||||| ||||||| |||||| ||||||||||||||||
seq2  AATCCCAAGCACTTGGGAGGGCAGAGAGCAGGCAAGATTTCTGAGTTTGA  150

seq1  GGCCAGCCTGGTCTACAGAGTGAG-TTCCAGGACAGCCAGGGATA-CAAA  182
      ||||||| |||||||||||||||| |||||||||||||  ||||| ||||
seq2  GGCCAGCTTGGTCTACAGAGTGAGTTTCCAGGACAGCCCAGGATACCAAA  200

seq1  GAG-AAACCCTGTCTTGG---AAAAAAAAAAAAAGAGTTGCCTTGGTCAT  228
      ||| ||||||||||||||   |||||||||||||||||||||||||||||
seq2  GAGAAAACCCTGTCTTGGAAAAAAAAAAAAAAAAGAGTTGCCTTGGTCAT  250

seq1  GGTGTCTGTTCACAGCAGTAAAACACTAAGACACTGAGAAAGAAAG-AAA  277
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGTGTCTGTTCACAGCAGTAAAACACTAAGACACTGAGAAAGAAAGAAAA  300

seq1  AAAATCCTTCTCTTCATTTAGAATTCAGCTTAATAATTTGGGATTAGGAT  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTTCTCTTCATTTAGAATTCAGCTTAATAATTTGGGATTAGGAT  350

seq1  CCAATCAAACTTGTTTAAACAAAAACCAGTTTCTATAGCACTCAGAACTT  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAAACTTGTTTAAACAAAAACCAGTTTCTATAGCACTCAGAACTT  400

seq1  CCAAAGAATTGGCAATTAAATGTCATTTTAATGGAAAGTTATTTCCATGG  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAATTGGCAATTAAATGTCATTTTAATGGAAAGTTATTTCCATGG  450

seq1  AATGTGTGAAGGGCACGTTATTGTCTCTCATCATATGAGAGCAAATGTAA  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGAAGGGCACGTTATTGTCTCTCATCATATGAGAGCAAATGTAA  500

seq1  ACAAGAGTTCTGTGCTCTGACAATGGAGGATACTGATTGGTGTTATGTGA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGTTCTGTGCTCTGACAATGGAGGATACTGATTGGTGTTATGTGA  550

seq1  AGATTTTTGTTTATGAAAACGTAACCTTTCCTTTGATTTCCATGGTAATG  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTGTTTATGAAAACGTAACCTTTCCTTTGATTTCCATGGTAATG  600

seq1  TTCCAAGAAAACCCTTAATAGAAAAATTATTATTTGGTGTGCAAATTCCT  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGAAAACCCTTAATAGAAAAATTATTATTTGGTGTGCAAATTCCT  650

seq1  TTACATTTGATTCTTCAATTAAGTCTTGAAATGAACTGCCTTTTTAAATA  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTGATTCTTCAATTAAGTCTTGAAATGAACTGCCTTTTTAAATA  700

seq1  GTCACCATTAAAAAGAAAAGGCCATTTCTGACTACACGGTGAGGAGACTG  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATTAAAAAGAAAAGGCCATTTCTGACTACACGGTGAGGAGACTG  750

seq1  TAATAAACTGGTCCCAAATGAATTGAATAATCCATAAGACAGTTAAGCTC  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAACTGGTCCCAAATGAATTGAATAATCCATAAGACAGTTAAGCTC  800

seq1  AGAGTTTATTTTTTGGGCTGAAACTCATACAAAAGTTTGAGGACCCATAT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTATTTTTTGGGCTGAAACTCATACAAAAGTTTGAGGACCCATAT  850

seq1  TCCATCAGGAGCTGGTTTGGTTCTGTGAACATGGCTTTACGTGCAGCTGG  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAGGAGCTGGTTTGGTTCTGTGAACATGGCTTTACGTGCAGCTGG  900

seq1  GTTTATATTGAACAGCAGCTCTCCCAATTCTTAGTGCAGCAAACGATTCA  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATTGAACAGCAGCTCTCCCAATTCTTAGTGCAGCAAACGATTCA  950

seq1  GCTGAAATATCTGAATATCAGCTTTCTCATCTATAAATTGTAGATAATGA  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATATCTGAATATCAGCTTTCTCATCTATAAATTGTAGATAATGA  1000

seq1  TTACTACATCATGGAGTAGTTGTGCATCCGGCATGAAATAAGTTATTTGA  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACATCATGGAGTAGTTGTGCATCCGGCATGAAATAAGTTATTTGA  1050

seq1  GGCTGATGTATTCCTTTAATAATGTAAAAAGAATATTGAATTC  1070
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATGTATTCCTTTAATAATGTAAAAAGAATATTGAATTC  1093