BAC Information

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BAC

Clone NameB6Ng01-175F12
Chromosome14 (Build37)
Map Location 8,197,854 - 8,431,549
singlet/doubletdoublet
Overlap geneLOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881
Upstream geneEG666874, B930046C15Rik, LOC100041600, LOC100041958, LOC100041964, LOC546590, LOC666906, LOC100042024, LOC100041664, LOC100042077, LOC100041675, LOC666329, EG666833, LOC100042043, EG666918, LOC100041700, LOC100042054, LOC100042100, EG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947
Downstream geneLOC100042312, LOC100041893, ENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175F12.bB6Ng01-175F12.g
ACCGA003173GA003174
length6421,127
definitionB6Ng01-175F12.b B6Ng01-175F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,197,854 - 8,198,458)(8,430,416 - 8,431,549)
sequence
gaattctaactgcttcattagatgtcatgtgcttttgagggggaacgttg
gttaggactctgacatgcttaagagattttgttagccccaaatctctagg
gactgaggatgtagtagatttttctcaacaataaatatgccacctgagtc
aattcatatgatatatactccaatttcccagggatttcctgtatcacaga
ggcaaatatctttctcctatacgtttaattgtataaaacctggatgatat
ttgctaatggtgcattccttgatagtggtcattcttttcattctttccat
acataaatacatacatatatatgtatgtatatatatatatatatatatat
atatatatatatatatatatacacacacacacacacacacacacacacac
acacacacacacacacacacacacacatgtatatatatatatccatgtgc
ttcacaaaatctctggtttacaatgctatcttttataaggaacactccct
attctttcaaacataggggatcaactacagggcaaatataaatggtaaac
ttgctgtcctatcttcaaaacattatcttgcacatggtcctgttctcaaa
tacaaccagacaatttaagtgggcatcatagagcaaaggtca
gaattcaagtagctaaccaccataagagctaagtacaccatctaaaaatg
gggtatagaactacacaaaaaattcacaatgaatcttgaatggctgagag
cactgaagaagtctgcaacatccttaatcttcagggaataaaaccaaaat
gaccctgaggttggtgtccaggagtatactttctagtgaagaatgccaag
atcaaaaacttctgtgaaaacacatggtcagaatttaaagaaacagaaac
attcttccatttctggtaggactgcaaactgctatgacaactatggaaat
caatatggaggttcctcagaaattcccacatagatctacttgaaggccat
ttaccaaccttactggtgaatggcctgcaactttcagttttcacttgatg
gcttattactcagattttcttatttattgagctatgactttgctcttggt
aagcatttggtctctctgattctaaagcagttctttgttcttacacattt
tttgaggaacctctatccactgggacttatttataccttcaaatccctct
aaattgggggactttttatacttgaggaagctgagtgacaaaagcaaagt
atgttgagccctttggtgtccagtgcacacgaatctatgggagtctagat
atgataatcctctagaacattccttaggaaagcagcaggaaaacagcagt
atgctctaaggtacctgtgtgacctcacttacctttgccagctttgtggg
tttctctactgctggtctgagaacaattggaaactcctggaatagatgtc
tcatatctcatttcctttgtcattgttagtatactagtgggagtaggttt
gaaaggaaaatactctcaagaacattaataaaacaagtgcttcattatgg
accatcagatgaagtaccaagttcaaggacagttctgcaagaactgctca
aagccagcccagtgtagctagaagaaagccaagcagagtcattcattacc
agcacctgcagcacctttctcaggacagggttcacttagctttggtaaga
agaggatgaccttgagattagctgcccaattcatcagaaaagagcagcag
ctatatggggaaagaatatgatgtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_8197854_8198458
seq2: B6Ng01-175F12.b_47_688

seq1  GAATTCTAACTGCTTCATTAGATGTCATGTGCTTTTGAGGGGGAACGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACTGCTTCATTAGATGTCATGTGCTTTTGAGGGGGAACGTTG  50

seq1  GTTAGGACTCTGACATGCTTAAGAGATTTTGTTAGCACCCAAATCTCTAG  100
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTTAGGACTCTGACATGCTTAAGAGATTTTGTTAGC-CCCAAATCTCTAG  99

seq1  GGACTGTGGATGTAGTAGATTTTTCTCAACAATAAATATGCCACCTGAGT  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAGGATGTAGTAGATTTTTCTCAACAATAAATATGCCACCTGAGT  149

seq1  CAATTCATATGATATATACTCCAATTTCCCAGGGATTTCCTGTATCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCATATGATATATACTCCAATTTCCCAGGGATTTCCTGTATCACAG  199

seq1  AGGCAAATATCTTTCTCCTATACGTTTAATTGTATAAAATCTGGATGATA  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGGCAAATATCTTTCTCCTATACGTTTAATTGTATAAAACCTGGATGATA  249

seq1  TTTGCTAATGGTGCATTCCTTGATAGTGGTCATTCTTTTCATTCTTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAATGGTGCATTCCTTGATAGTGGTCATTCTTTTCATTCTTTCCA  299

seq1  TACATAAATACATACATATATATGTATGTATATATATATATATATATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAATACATACATATATATGTATGTATATATATATATATATATATA  349

seq1  TATATATATATATATATATAT-----------------------------  371
      |||||||||||||||||||||                             
seq2  TATATATATATATATATATATACACACACACACACACACACACACACACA  399

seq1  ---------ATATACACACACACACACATATATATATATATATCCATGTG  412
               | | |||||||||||||||| ||||||||||||||||||||
seq2  CACACACACACACACACACACACACACATGTATATATATATATCCATGTG  449

seq1  CTTCACAAAATCTCTGGTTTACAATGCTATCTTTTATAAGGAACACTCCC  462
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAAAATCTCTGGTTTACAATGCTATCTTTTATAAGGAACACTCCC  499

seq1  TATTCTTTCAAACATAGGGGATCAACTACAGGGCAAATATAAATGGTAAA  512
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTCAAACATAGGGGATCAACTACAGGGCAAATATAAATGGTAAA  549

seq1  CTTGCTGTCCTATCTTCAAAACATTATCTTGCACATGGTCCTGTTCTCAA  562
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTCCTATCTTCAAAACATTATCTTGCACATGGTCCTGTTCTCAA  599

seq1  ATACAACCAGACAATTTAAGTGGGCATCATAGAGCAAAGGTCA  605
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACCAGACAATTTAAGTGGGCATCATAGAGCAAAGGTCA  642

seq1: chr14_8430416_8431549
seq2: B6Ng01-175F12.g_68_1194 (reverse)

seq1  CTGACACCCATATTCTTTCCCCAATATTGCTGGCTGCTTCTTTTCTGAAG  50
      ||||||  |||||||||||||| |||| ||| ||||| |||||||||| |
seq2  CTGACA-TCATATTCTTTCCCC-ATATAGCT-GCTGC-TCTTTTCTGATG  46

seq1  GAATATGGGGCAGCT-ATCTC-AGGTCATCC-CTTCTCCTACCAAAGCTA  97
          || |||||||| ||||| ||||||||| |||||  |||||||||||
seq2  ---AATTGGGCAGCTAATCTCAAGGTCATCCTCTTCT--TACCAAAGCTA  91

seq1  AGTG-ACCCTGTCCTGGAGAAAGGTGCTGCAGGTGCTGGTAATGAATAAC  146
      |||| |||||||||| ||||||||||||||||||||||||||||||| ||
seq2  AGTGAACCCTGTCCT-GAGAAAGGTGCTGCAGGTGCTGGTAATGAATGAC  140

seq1  TTCTGCTTGGCTTTCTTCTTGCTCCACTTGGCTGGCTTTGAGCAGTTCTT  196
       |||||||||||||||||| ||| |||| |||||||||||||||||||||
seq2  -TCTGCTTGGCTTTCTTCTAGCTACACTGGGCTGGCTTTGAGCAGTTCTT  189

seq1  GCAGAACTGTCCTTGAACTTGGTACTTCATCCTGATGGTCCAT-ATGAAG  245
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  GCAGAACTGTCCTTGAACTTGGTACTTCAT-CTGATGGTCCATAATGAAG  238

seq1  CACTTGTTTTATTAATGTTCTTGAGAGTATTTTTCCTTCAAACCTACTCC  295
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  CACTTGTTTTATTAATGTTCTTGAGAGTATTTTCCTTTCAAACCTACTCC  288

seq1  CACTAGTATACTAACAATGACAAAGGAAATGAGATATGAGACATCTATTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTATACTAACAATGACAAAGGAAATGAGATATGAGACATCTATTC  338

seq1  CAGGAGTTTCCAATTGTTCTCAGACCAGCAGTAGAGAAACCCACAAAGCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTTCCAATTGTTCTCAGACCAGCAGTAGAGAAACCCACAAAGCT  388

seq1  GGCAAAGGTAAGTGAGGTCACACAGGTACCTTAGAGCATACTGCTGTTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGTAAGTGAGGTCACACAGGTACCTTAGAGCATACTGCTGTTTT  438

seq1  CCTGCTGCTTTCCTAAGGAATGTTCTAGAGGATTATCATATCTAGACTCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCTTTCCTAAGGAATGTTCTAGAGGATTATCATATCTAGACTCC  488

seq1  CATAGATTCGTGTGCACTGGACACCAAAGGGCTCAACATACTTTGCTTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTCGTGTGCACTGGACACCAAAGGGCTCAACATACTTTGCTTTT  538

seq1  GTCACTCAGCTTCCTCAAGTATAAAAAGTCCCCCAATTTAGAGGGATTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCAGCTTCCTCAAGTATAAAAAGTCCCCCAATTTAGAGGGATTTG  588

seq1  AAGGTATAAATAAGTCCCAGTGGATAGAGGTTCCTCAAAAAATGTGTAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATAAATAAGTCCCAGTGGATAGAGGTTCCTCAAAAAATGTGTAAG  638

seq1  AACAAAGAACTGCTTTAGAATCAGAGAGACCAAATGCTTACCAAGAGCAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAACTGCTTTAGAATCAGAGAGACCAAATGCTTACCAAGAGCAA  688

seq1  AGTCATAGCTCAATAAATAAGAAAATCTGAGTAATAAGCCATCAAGTAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTCATAGCTCAATAAATAAGAAAATCTGAGTAATAAGCCATCAAGTGAA  738

seq1  AACTGAAAGTTGCAGGCCATTCACCAGTAAGGTTGGTAAATGGCCTTCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAGTTGCAGGCCATTCACCAGTAAGGTTGGTAAATGGCCTTCAA  788

seq1  GTAGATCTATGTGGGAATTTCTGAGGAACCTCCATATTGATTTCCATAGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCTATGTGGGAATTTCTGAGGAACCTCCATATTGATTTCCATAGT  838

seq1  TGTCATAGCAGTTTGCAGTCCTACCAGAAATGGAAGAATGTTTCTGTTTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAGCAGTTTGCAGTCCTACCAGAAATGGAAGAATGTTTCTGTTTC  888

seq1  TTTAAATTCTGACCATGTGTTTTCACAGAAGTTTTTGATCTTGGCATTCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTCTGACCATGTGTTTTCACAGAAGTTTTTGATCTTGGCATTCT  938

seq1  TCACTAGAAAGTATACTCCTGGACACCAACCTCAGGGTCATTTTGGTTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGAAAGTATACTCCTGGACACCAACCTCAGGGTCATTTTGGTTTT  988

seq1  ATTCCCTGAAGATTAAGGATGTTGCAGACTTCTTCAGTGCTCTCAGCCAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTGAAGATTAAGGATGTTGCAGACTTCTTCAGTGCTCTCAGCCAT  1038

seq1  TCAAGATTCATTGTGAATTTTTTGTGTAGTTCTATACCCCATTTTTAGAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATTCATTGTGAATTTTTTGTGTAGTTCTATACCCCATTTTTAGAT  1088

seq1  GGTGTACTTAGCTCTTATGGTGGTTAGCTACTTGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||
seq2  GGTGTACTTAGCTCTTATGGTGGTTAGCTACTTGAATTC  1127