BAC Information

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BAC

Clone NameB6Ng01-175M13
Chromosome1 (Build37)14 (Build37)
Map Location 106,526,661 - 106,527,006111,501,567 - 111,502,692
singlet/doubletsingletsinglet
Overlap geneLOC100041134
Upstream geneLOC383546
Downstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175M13.bB6Ng01-175M13.g
ACCGA003497GA003498
length1,0321,130
definitionB6Ng01-175M13.b B6Ng01-175M13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,526,661 - 106,527,006)(111,501,567 - 111,502,692)
sequence
gaattcatgaaattcttaggcaaatggatggatctggaggatatcatcct
gagtgaggtaacccaatcacaaaagaacacacatggtatgcactcactga
taagcagatattagctcagaaacttagaatatctgagatacaatttgcaa
aacatatgaaactcaagaagaaggaagaccaaagtgtagatacttcaatc
cttcttagaatggggaacaaaatacccatggaaggagttacagagacaaa
gttcagagctaagatagaaggaaagaccaactattgcatatgccagaaag
attttgctgacaggaccctccctgatatagctgtctcttgtgaggctatt
ccagtgccaggaaaatacagaagtagatactcatagtcatctattagatg
gaacacagggcccccaatggaggagctagagaatgtactcaaggatctga
aggggtctgtaaccaaataggtggaacaacatgaactaaccaataccccc
agagctcctgtctctagctgaatatgtagcagaagatggcccagtctgca
atcaatgggaaaagaggccccttggtcttgcaaactttatatgccccagc
acaggggaaacaccagggccatgaagtgggagtaggtgggcaggggagca
gggtggaggacggtatagctatataggggactttcaggatagcatttgaa
atataaatgaagaaaatatctaataaaacttgaaaaaaaagaaaaagaaa
ccaaatcatgcctaaaaaataatctgtacaaattttgccaaatgtactca
taacttggtcatttatccatgctgtacagtacaatagaacttcaatgaaa
tttggaactgagtatagggtaggtttgtgacctaatcacagttaattaca
ttatgtcaatggtgcagaaaaaattaataatatgagtttattccaaatgt
aatccatagagtataatgctcactcattgtggttattttagctcaacagg
aagggtgcacttaaatgagaagaacatttaaa

gaattcattatgtcaaaggtgaacactgatcatttttgagtttttaattt
ctcattgctgaatttcctaatatgcatagaagttctgactcaagagcagg
aattttccagaaagcttatccaacgatgccatatattaacccaactctgg
aatgatttggatcaatccagtccattaagtgaaggcttataaatgaagtc
tcttactagctggaacacacgataatgctctccattggagccatgctgtt
ttgaaagaaaaattaggctgatttacattttcttctcattcatttttttg
atgtctctaaaatgtctgttgaacaaaacatgaaggaaaattttataagg
acacatgttatatccagctgaatagagaaaagtttgcacaaaccaatttt
cttaaaatcatatacaagaggatgaaactttgtttatttgttctaaggga
tgccatattactgtgccatttttattacccagaaaaggttgccagtacaa
tgttgattgaagtgatagcatcagccttcctgtttctctattcaactgac
atgtaaggggcatccctgccactgcatctgagaatcattaacataagtat
caataaactgtacacgcacctcagggggagaggagtcacttaaggcttca
gtgaaggaataagttttcaaggagaagaaaattcattcaaggtctttgtt
tttctaatactcactaaaattcagtaataaatcaatgaagattacatgtt
atgcaattcaggtttgttgaacataacctttatataagcatcgttgtcac
ctgtgtgtatctatcagttgcctagggtaaaaattactcactgagttaca
attgtaattaggcgcatagatggatccatagatggattttctttatatct
ccaactggagcacctgctgtgaactcacacccagcacagtgggatgcttg
catcacatcctgaatccactattttcctagtttcatttctcttttggttc
cacctcttctcctatggtccatttactacagaagcatacattctttattg
ctgtggagctgtagcccatgctcaattagtgccctatagaatggcttaac
agtgtcagttagagagcaggcttcagaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_106526661_106527006
seq2: B6Ng01-175M13.b_423_788

seq1  AGTCATCTATTAGATGGAACACAGAGCCCCCAATGGAG------------  38
      |||||||||||||||||||||||| |||||||||||||            
seq2  AGTCATCTATTAGATGGAACACAGGGCCCCCAATGGAGGAGCTAGAGAAT  50

seq1  ------------CTGAAGGGGTCTGCAACCCTATAGGTGGAACAACAATA  76
                  ||||||||||||| ||||  ||||||||||||||   |
seq2  GTACTCAAGGATCTGAAGGGGTCTGTAACCAAATAGGTGGAACAAC---A  97

seq1  TGAACTAACCAGTAACTCCAGAGCTCATGTCTCTAGCTGCATTTGTAGCA  126
      ||||||||||| || | ||||||||| |||||||||||| || |||||||
seq2  TGAACTAACCAATACCCCCAGAGCTCCTGTCTCTAGCTGAATATGTAGCA  147

seq1  GAAGATGGCCTAGTCGGCCATCACTGGGAAGAGAGGCCCCTTGGTCTTGC  176
      |||||||||| |||| || |||| |||||| |||||||||||||||||||
seq2  GAAGATGGCCCAGTCTGCAATCAATGGGAAAAGAGGCCCCTTGGTCTTGC  197

seq1  AAACTTTATATGCCCCAGTACAGGGGAAACACCAGGGCCAAGAAGTGGGA  226
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  AAACTTTATATGCCCCAGCACAGGGGAAACACCAGGGCCATGAAGTGGGA  247

seq1  GTGGGTGGGTAGGGGAGCAGGGGAGTGGGGGG---AG-GGTATGGGGGAC  272
      || |||||| ||||||||||||  | ||  ||   ||   ||| ||||||
seq2  GTAGGTGGGCAGGGGAGCAGGGTGGAGGACGGTATAGCTATATAGGGGAC  297

seq1  TTTCAGGATAGCATTTGAAATGTAAGTGAAGTAAATACCTAATAAAAATT  322
      ||||||||||||||||||||| ||| ||||| ||||| ||||||||| ||
seq2  TTTCAGGATAGCATTTGAAATATAAATGAAGAAAATATCTAATAAAACTT  347

seq1  TGGAGAAAAAAAAAGAAAAAGAAA  346
            ||||||||||||||||||
seq2  -----GAAAAAAAAGAAAAAGAAA  366


seq1: chr14_111501567_111502692
seq2: B6Ng01-175M13.g_62_1191

seq1  GAATTCATTATGTCAAAGGTGAACACTGATCATTTTTGAGTTTTTAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGTCAAAGGTGAACACTGATCATTTTTGAGTTTTTAATTT  50

seq1  CTCATTGCTGAATTTCCTAATATGCATAGAAGTTCTGACTCAAGAGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGCTGAATTTCCTAATATGCATAGAAGTTCTGACTCAAGAGCAGG  100

seq1  AATTTTCCAGAAAGCTTATCCAACGATGCCATATATTAACCCAACTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCAGAAAGCTTATCCAACGATGCCATATATTAACCCAACTCTGG  150

seq1  AATGATTTGGATCAATCCAGTCCATTAAGTGAAGGCTTATAAATGAAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTGGATCAATCCAGTCCATTAAGTGAAGGCTTATAAATGAAGTC  200

seq1  TCTTACTAGCTGGAACACACGATAATGCTCTCCATTGGAGCCATGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTAGCTGGAACACACGATAATGCTCTCCATTGGAGCCATGCTGTT  250

seq1  TTGAAAGAAAAATTAGGCTGATTTACATTTTCTTCTCATTCATTTTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGAAAAATTAGGCTGATTTACATTTTCTTCTCATTCATTTTTTTG  300

seq1  ATGTCTCTAAAATGTCTGTTGAACAAAACATGAAGGAAAATTTTATAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTAAAATGTCTGTTGAACAAAACATGAAGGAAAATTTTATAAGG  350

seq1  ACACATGTTATATCCAGCTGAATAGAGAAAAGTTTGCACAAACCAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTTATATCCAGCTGAATAGAGAAAAGTTTGCACAAACCAATTTT  400

seq1  CTTAAAATCATATACAAGAGGATGAAACTTTGTTTATTTGTTCTAAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATCATATACAAGAGGATGAAACTTTGTTTATTTGTTCTAAGGGA  450

seq1  TGCCATATTACTGTGCCATTTTTATTACCCAGAAAAGGTTGCCAGTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATATTACTGTGCCATTTTTATTACCCAGAAAAGGTTGCCAGTACAA  500

seq1  TGTTGATTGAAGTGATAGCATCAGCCTTCCTGTTTCTCTATTCAACTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATTGAAGTGATAGCATCAGCCTTCCTGTTTCTCTATTCAACTGAC  550

seq1  ATGTAAGGGGCATCCCTGCCACTGCATCTGAGAATCATTAACATAAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGGGGCATCCCTGCCACTGCATCTGAGAATCATTAACATAAGTAT  600

seq1  CAATAAACTGTACACGCACCTCAGGGGGAGAGGAGTCACTTAAGGCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAACTGTACACGCACCTCAGGGGGAGAGGAGTCACTTAAGGCTTCA  650

seq1  GTGAAGGAATAAGTTTTCAAGGAGAAGAAAATTCATTCAAGGTCTTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGAATAAGTTTTCAAGGAGAAGAAAATTCATTCAAGGTCTTTGTT  700

seq1  TTTCTAATACTCACTAAAATTCAGTAATAAATCAATGAAGATTACATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATACTCACTAAAATTCAGTAATAAATCAATGAAGATTACATGTT  750

seq1  ATGCAATTCAGGTTTGTTGAACATAACCTTTATATAAGCATCGTTGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTCAGGTTTGTTGAACATAACCTTTATATAAGCATCGTTGTCAC  800

seq1  CTGTGTGTATCTATCAGTTGCCTAGGGTAAAAATTACTCACTGAGTTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTATCTATCAGTTGCCTAGGGTAAAAATTACTCACTGAGTTACA  850

seq1  ATTGTAATTAGGCGCATAGATGGATCCATAGATGGATTTTCTTTATATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAATTAGGCGCATAGATGGATCCATAGATGGATTTTCTTTATATCT  900

seq1  CCAACTGGAGCACCTGCTGTGAACTCACACCCAGCACAGT-GGATGCTTG  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCAACTGGAGCACCTGCTGTGAACTCACACCCAGCACAGTGGGATGCTTG  950

seq1  CATCACATCCTGAATCCACTATTTTCCTAGTTTCATTTCTCTTTTGGTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATCCTGAATCCACTATTTTCCTAGTTTCATTTCTCTTTTGGTTC  1000

seq1  CACCTCTTCTTCCCTATGGTCCCATTTACTACAG-AGCATACA-TCTTTA  1047
      ||||||||||  |||||||| ||||||||||||| |||||||| ||||||
seq2  CACCTCTTCT--CCTATGGT-CCATTTACTACAGAAGCATACATTCTTTA  1047

seq1  TTGCTGTGGAGGCTGTAGCCCATGCTCCATTAGTG-CCTATAGAATGGC-  1095
      |||||||||| |||||||||||||||| ||||||| ||||||||||||| 
seq2  TTGCTGTGGA-GCTGTAGCCCATGCTCAATTAGTGCCCTATAGAATGGCT  1096

seq1  TAACAGTGTCAG-TAGAGAGCAG--CTCAGAAGT  1126
      |||||||||||| ||||||||||   ||||||||
seq2  TAACAGTGTCAGTTAGAGAGCAGGCTTCAGAAGT  1130


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