BAC Information

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BAC

Clone NameB6Ng01-176P20
Chromosome14 (Build37)
Map Location 26,719,164 - 27,000,200
singlet/doubletdoublet
Overlap genePlac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246
Upstream geneLOC100039411, Zmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11
Downstream geneLOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176P20.bB6Ng01-176P20.g
ACCGA004381GA004382
length1231,184
definitionB6Ng01-176P20.b B6Ng01-176P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,000,078 - 27,000,200)(26,719,164 - 26,720,318)
sequence
caggacaaccagggctaccatagagaaactctgttgaaacaacaacaaca
accaccacaaccactcacgggtacagttaatttacttaatgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtg
gaattcacacaggcatacatgcatgcatacagacagacagacagacaatt
tttcaattataaaaagtaagggagggctggcgagatggctcagcgggtaa
gtgcacactgactgctcttctgaaggccctgagttcaaatcccagcaacc
acatggtggctcacaaccacctgtaatgagatctgacgccctcttctggt
gtgtctgaagacagtgtatttatatataataataaataaatctttgggac
tgagtgagcagagttaactggagctagtggggccaaccagagcgagcaga
ggtcctaaaattcaattcccaacaatcacatgaaggctcacaaccatcta
tacaactacagtgtactcacatacataaaataaataaatcttaaaaaaaa
aagtaagggagtcaggcagtaatgatacatgccttggtcacagcactggg
gaggcagaggcaggtggatcctcctgagttctaagccagtctggtctaca
gagccagttcaaggacagccaaaactacacaaagaaatcctgcctcaaaa
aaaagtacacaagtaaacaaacaaacaaataaataagaagacatggaaga
gtcttctgacaatggaaacaggaactgagctgaggttggcctctgaatag
tcctgtatgagggggttgctaagaccactcattggataacaattacccaa
ctgcacaaacccagagaccagaactctatcctcagaacacacataaaggt
ggaaaaagagagccaactccacagagctgttccctgacttcctcactccc
actgtgcaactctgagcacaataataaacaaattacaagaagcacacaaa
tgactactacactttttgaagaaaaaaagtctatccttagcagaaatcaa
agacattcagtttaaaaataataaagatgggcctggggatgtaactcagt
ttgggcagaatgccttgctttgaaattttggaggccctccagggtttgcc
ctcagcacaaccttaaaaacagaaaatggtaggtatacatctttaatcgg
aggcacttgggaaggttagagcaggagggaccagaaggttccaaagttac
caatgttctaccgttggtaaggtcagcacgacctgagccttacatgagga
acttgttctttaaacacatatatatatttaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_27000078_27000200
seq2: B6Ng01-176P20.b_50_172 (reverse)

seq1  CACACACACACACACACACACACACACACACACATTAAGTAAATTAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACATTAAGTAAATTAACTG  50

seq1  TACCCGTGAGTGGTTGTGGTGGTTGTTGTTGTTGTTTCAACAGAGTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGTGAGTGGTTGTGGTGGTTGTTGTTGTTGTTTCAACAGAGTTTCT  100

seq1  CTATGGTAGCCCTGGTTGTCCTG  123
      |||||||||||||||||||||||
seq2  CTATGGTAGCCCTGGTTGTCCTG  123

seq1: chr14_26719164_26720318
seq2: B6Ng01-176P20.g_69_1252

seq1  GAATTCACACAGGCATACATGCATGCATACAGACAGACAGACAGACAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAGGCATACATGCATGCATACAGACAGACAGACAGACAATT  50

seq1  TTTCAATTATAAAAAGTAAGGGAGGGCTGGCGAGATGGCTCAGCGGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTATAAAAAGTAAGGGAGGGCTGGCGAGATGGCTCAGCGGGTAA  100

seq1  GTGCACACTGACTGCTCTTCTGAAGGCCCTGAGTTCAAATCCCAGCAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACTGACTGCTCTTCTGAAGGCCCTGAGTTCAAATCCCAGCAACC  150

seq1  ACATGGTGGCTCACAACCACCTGTAATGAGATCTGACGCCCTCTTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGGCTCACAACCACCTGTAATGAGATCTGACGCCCTCTTCTGGT  200

seq1  GTGTCTGAAGACAGTGTATTTATATATAATAATAAATAAATCTTTGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGAAGACAGTGTATTTATATATAATAATAAATAAATCTTTGGGAC  250

seq1  TGAGTGAGCAGAGTTAACTGGAGCTAGTGGGGCCAACCAGAGCGAGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGCAGAGTTAACTGGAGCTAGTGGGGCCAACCAGAGCGAGCAGA  300

seq1  GGTCCTAAAATTCAATTCCCAACAATCACATGAAGGCTCACAACCATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTAAAATTCAATTCCCAACAATCACATGAAGGCTCACAACCATCTA  350

seq1  TACAACTACAGTGTACTCACATACATAAAATAAATAAATCTTAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTACAGTGTACTCACATACATAAAATAAATAAATCTTAAAAAAAA  400

seq1  AAGTAAGGGAGTCAGGCAGTAATGATACATGCCTTGGTCACAGCACTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGGAGTCAGGCAGTAATGATACATGCCTTGGTCACAGCACTGGG  450

seq1  GAGGCAGAGGCAGGTGGATCCTCCTGAGTTCTAAGCCAGTCTGGTCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGGTGGATCCTCCTGAGTTCTAAGCCAGTCTGGTCTACA  500

seq1  GAGCCAGTTCAAGGACAGCCAAAACTACACAAAGAAATCCTGCCTCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGTTCAAGGACAGCCAAAACTACACAAAGAAATCCTGCCTCAAAA  550

seq1  AAAAGTACACAAGTAAACAAACAAACAAATAAATAAGAAGACATGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACACAAGTAAACAAACAAACAAATAAATAAGAAGACATGGAAGA  600

seq1  GTCTTCTGACAATGGAAACAGGAACTGAGCTGAGGTTGGCCTCTGAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGACAATGGAAACAGGAACTGAGCTGAGGTTGGCCTCTGAATAG  650

seq1  TCCTGTATGAGGGGGTTGCTAAGACCACTCATTGGATAACAATTACCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTATGAGGGGGTTGCTAAGACCACTCATTGGATAACAATTACCCAA  700

seq1  CTGCACAAACCCAGAGACCAGAACTCTATCCTCAGAACACACATAAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAAACCCAGAGACCAGAACTCTATCCTCAGAACACACATAAAGGT  750

seq1  GGAAAAAGAGAGCCAACTCCACAGAGCTGTTCCCTGACTTCCTCACTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGAGAGCCAACTCCACAGAGCTGTTCCCTGACTTCCTCACTCCC  800

seq1  ACTGTGCAACTCTGAGCACAATAATAAACAAATTACAAGAAGCACACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCAACTCTGAGCACAATAATAAACAAATTACAAGAAGCACACAAA  850

seq1  TGACTACTACAC-TTTTGAAGAAAAAAAGTCTATCCTTAGCAGAAATCAA  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGACTACTACACTTTTTGAAGAAAAAAAGTCTATCCTTAGCAGAAATCAA  900

seq1  AGACATTCAG-TTAAAAATAATAAAGAT-GGCCTGGGGATGTAACTCAGT  947
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  AGACATTCAGTTTAAAAATAATAAAGATGGGCCTGGGGATGTAACTCAGT  950

seq1  T--GGCAGAATG-CTTGCTTTGAAATTTT-GAGG-CCTC--AGGTTTGCC  990
      |  ||||||||| |||||||||||||||| |||| ||||   ||||||||
seq2  TTGGGCAGAATGCCTTGCTTTGAAATTTTGGAGGCCCTCCAGGGTTTGCC  1000

seq1  CTCAGCACAACC-TAAAAACAG-AAATGGTA-GTATACATCTTTAATC-G  1036
      |||||||||||| ||||||||| |||||||| |||||||||||||||| |
seq2  CTCAGCACAACCTTAAAAACAGAAAATGGTAGGTATACATCTTTAATCGG  1050

seq1  AGGCACTT-GGAAGG-TAGAGGCAGGA-GGACCAGAAG--TTCAAAGTTA  1081
      |||||||| |||||| |||| |||||| ||||||||||  | ||||||||
seq2  AGGCACTTGGGAAGGTTAGA-GCAGGAGGGACCAGAAGGTTCCAAAGTTA  1099

seq1  CCCATG-TCTAC--GTGGTAAGTTCAGCACCAGACTGAGC--TACAAGA-  1125
      || ||| |||||   ||||||| ||||||| |  ||||||  |||| || 
seq2  CCAATGTTCTACCGTTGGTAAGGTCAGCACGA-CCTGAGCCTTACATGAG  1148

seq1  GACCTTGTTCTTTAAA-ACATATA-----TTAAAAA  1155
      || ||||||||||||| |||||||     |||||||
seq2  GAACTTGTTCTTTAAACACATATATATATTTAAAAA  1184