BAC Information

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BAC

Clone NameB6Ng01-178A04
Chromosome14 (Build37)
Map Location 12,726,939 - 12,815,576
singlet/doubletdoublet
Overlap genePtprg, LOC100042441
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream gene3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178A04.bB6Ng01-178A04.g
ACCGA005121GA005122
length1,1331,143
definitionB6Ng01-178A04.b B6Ng01-178A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,814,432 - 12,815,576)(12,726,939 - 12,728,106)
sequence
gaattcatttttgaatttatttattacattattttaatatagagacagga
agattgatgccattttaaaagatgaacagcccagggggaaaaaaaggact
gagataccatatcaccaagaaattaattacatattttgttagggggagat
gatagctttgttttcagtagaagtgatagtcccccccacacaaaaaaagc
cacttatagcacatacacaaaatgaccctgaaatgcaagcttctctaggt
ttgttatcttaagctgctgttaggtgagtttcagaccccaaaggcataga
actgcagctcttagcaaatcgatttactaatccacccaggagtctatcaa
tcctgaagccaatctttctacctatcaccaaaaaccagggttccagaccc
atgcataagaacattagatgtgtcaagtaaattgaagtacctattcaaat
ccctgttcactgccagttctgattgcaacttttgccatttgtgccataat
ctacttacactgaacaaagcctgctgggtaaatcctgctgaactttccat
tttctcctgagtcagtatacacaagcattgattgtgctattcaattatga
cagggagaagtggccattcacgtaggtgctgatgtctagtgccctcctca
ctgaaagatcttcacctgttattattatctaggtctgctaaatctattat
ggaagatccttcatgtgttcagttgataggagtaagaacagggctccatt
cctttatttaaaaaaaaaaaaaaaaaaacagtatgtcatctaagaaccca
tggctctatatttggcatagaggtcccagaaattaaaacagagcaagtac
tccctgcatatggatgctgctcacacacacagttaagcatggaagctttt
actgggaagtttttgtttgcagttttgagacaggctctcattgtgtaagg
cctggaacttgctatataaaccaggctggccaacacaacaaatgtagaga
tatgctgtcacagaacaatgcacctggcttttcaacagaagtgtcagaca
cctgactgagctgctatatcctgcacaccacagcacatcagtggggaata
ctgtccctttactcaaacatattggtgtgcctg
gaattcattcacaagagtcctctcctctctacaagtcaatgggcacactc
acacaaaactcaatgaaagaaatgaacacaacattaaagaaacatcattt
aggagaaaagaaagaaacgattttagtctgacaacacattgtaatctcag
catttgttggttcaattctaaactcatcagtattttaggtttcaggccta
cccaagctcagtgaagaccctgcctcagataggtaggtatagttaagttg
gtcagtcaatagatggatacttttgatccaggcactgtggcccatttctg
ttgtcctaccaacttgagggtctaagtcagagtggtttggaaaacagcct
ccccagtttagtgagaacttgtaatagaaatactgaggaaatgtaagctg
ggactgcagcttagggtgcagtgcttgtctcttgtcctggatgtaatcct
gtttttttattattattattattattattattattattattattattatt
attattttaaaggtagccaggtgtggttgttcatgcctttaatcccagca
ctcaggctcaggcaggatctctgagatggaggccagcctggtctacagag
caagttccaggacagccaggactatacagagaagccctgtctctgaaaag
caaaacaacccaaccaaaccaaaaaaaggtgaaaaacaggaatgtttgtt
tgcaaattcagtgaacagacagacagatgtctctttcagccacctctcca
atgctgtgacctacagtagggacgcatcttttctgcagtacgccattgct
cagccatctagatgaatgcggaatctcggtggctaagcattttgctgggc
agttgaacaccttggaggtattaaattgattgatacagctttccggtcag
tccatcctagaggatgtgattgaggtgctgacctggtggctctctgctgt
tcatttaaagtggagaccactggtcttccatatgacccaggtcccgtgct
ggacagtcagcatctttggacttcagtagcttcgtgcattgctttgttct
tcccatctgacttagcagtcgcagtcctaacaacaaggccagtttggggc
ccgattgagttctgtgcgagcttctttttgaacccttgagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12814432_12815576
seq2: B6Ng01-178A04.b_47_1179 (reverse)

seq1  CAGGCACAC--ATATGTTGTGAAGGTAAAAGGGACAGTATTCCCCACTGA  48
      |||||||||  ||||||| |||  || |||||||||||||||||||||||
seq2  CAGGCACACCAATATGTT-TGA--GT-AAAGGGACAGTATTCCCCACTGA  46

seq1  TGGTGCTTGTGGTGTGCAGGGATATAAGCCAGCCTCAGTCAGGGTGTCTG  98
      | |||| ||||||||||| |||||||   ||| |||||||| ||||||||
seq2  T-GTGC-TGTGGTGTGCA-GGATATA--GCAG-CTCAGTCA-GGTGTCTG  89

seq1  ACAACTTCTGTTGGAAAAGCCAAGGTGCATTGTTCTGTGGACAGCATATT  148
      || ||||||||| |||||||| |||||||||||||||| ||||||||| |
seq2  AC-ACTTCTGTT-GAAAAGCC-AGGTGCATTGTTCTGT-GACAGCATA-T  134

seq1  CTCTACATTTGTTGTGTTGGCCAGCCTGGTTTATATAGCAAGTTCCAGGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACATTTGTTGTGTTGGCCAGCCTGGTTTATATAGCAAGTTCCAGGC  184

seq1  CTTACACAATGAGAGCCTGTCTCAAAACTGCAAACAAAAACTTCCCAGTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACAATGAGAGCCTGTCTCAAAACTGCAAACAAAAACTTCCCAGTA  234

seq1  AAAGCTTCCATGCTTAACTGTGTGTGTGAGCAGCATCCATATGCAGGGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCCATGCTTAACTGTGTGTGTGAGCAGCATCCATATGCAGGGAG  284

seq1  TACTTGCTCTGTTTTAATTTCTGGGACCTCTATGCCAAATATAGAGCCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCTCTGTTTTAATTTCTGGGACCTCTATGCCAAATATAGAGCCAT  334

seq1  GGGTTCTTAGATGACATACTG--TTTTTTTTTTTTTTTTTAAATAAAGGA  396
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  GGGTTCTTAGATGACATACTGTTTTTTTTTTTTTTTTTTTAAATAAAGGA  384

seq1  ATGGAGCCCTGTTCTTACTCCTATCAACTGAACACATGAAGGATCTTCCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCCCTGTTCTTACTCCTATCAACTGAACACATGAAGGATCTTCCA  434

seq1  TAATAGATTTAGCAGACCTAGATAATAATAACAGGTGAAGATCTTTCAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATTTAGCAGACCTAGATAATAATAACAGGTGAAGATCTTTCAGT  484

seq1  GAGGAGGGCACTAGACATCAGCACCTACGTGAATGGCCACTTCTCCCTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGCACTAGACATCAGCACCTACGTGAATGGCCACTTCTCCCTGT  534

seq1  CATAATTGAATAGCACAATCAATGCTTGTGTATACTGACTCAGGAGAAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTGAATAGCACAATCAATGCTTGTGTATACTGACTCAGGAGAAAA  584

seq1  TGGAAAGTTCAGCAGGATTTACCCAGCAGGCTTTGTTCAGTGTAAGTAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTTCAGCAGGATTTACCCAGCAGGCTTTGTTCAGTGTAAGTAGA  634

seq1  TTATGGCACAAATGGCAAAAGTTGCAATCAGAACTGGCAGTGAACAGGGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCACAAATGGCAAAAGTTGCAATCAGAACTGGCAGTGAACAGGGA  684

seq1  TTTGAATAGGTACTTCAATTTACTTGACACATCTAATGTTCTTATGCATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATAGGTACTTCAATTTACTTGACACATCTAATGTTCTTATGCATG  734

seq1  GGTCTGGAACCCTGGTTTTTGGTGATAGGTAGAAAGATTGGCTTCAGGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGAACCCTGGTTTTTGGTGATAGGTAGAAAGATTGGCTTCAGGAT  784

seq1  TGATAGACTCCTGGGTGGATTAGTAAATCGATTTGCTAAGAGCTGCAGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGACTCCTGGGTGGATTAGTAAATCGATTTGCTAAGAGCTGCAGTT  834

seq1  CTATGCCTTTGGGGTCTGAAACTCACCTAACAGCAGCTTAAGATAACAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCTTTGGGGTCTGAAACTCACCTAACAGCAGCTTAAGATAACAAA  884

seq1  CCTAGAGAAGCTTGCATTTCAGGGTCATTTTGTGTATGTGCTATAAGTGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGAAGCTTGCATTTCAGGGTCATTTTGTGTATGTGCTATAAGTGG  934

seq1  CTTTTTTTGTGTGGGGGGGACTATCACTTCTACTGAAAACAAAGCTATCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTGTGTGGGGGGGACTATCACTTCTACTGAAAACAAAGCTATCA  984

seq1  TCTCCCCCTAACAAAATATGTAATTAATTTCTTGGTGATATGGTATCTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCTAACAAAATATGTAATTAATTTCTTGGTGATATGGTATCTCA  1034

seq1  GTCCTTTTTTTCCCCCTGGGCTGTTCATCTTTTAAAATGGCATCAATCTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTTTTTCCCCCTGGGCTGTTCATCTTTTAAAATGGCATCAATCTT  1084

seq1  CCTGTCTCTATATTAAAATAATGTAATAAATAAATTCAAAAATGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCTATATTAAAATAATGTAATAAATAAATTCAAAAATGAATTC  1133

seq1: chr14_12726939_12728106
seq2: B6Ng01-178A04.g_63_1205

seq1  GAATTCATTCACAAGAGTCCTCTCCTCTCTACAAGTCAATGGGCACACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACAAGAGTCCTCTCCTCTCTACAAGTCAATGGGCACACTC  50

seq1  ACACAAAACTCAATGAAAGAAATGAACACAACATTAAAGAAACATCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAACTCAATGAAAGAAATGAACACAACATTAAAGAAACATCATTT  100

seq1  AGGAGAAAAGAAAGAAACGATTTTAGTCTGACAACACATTGTAATCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAAGAAAGAAACGATTTTAGTCTGACAACACATTGTAATCTCAG  150

seq1  CATTTGTTGGTTCAATTCTAAACTCATCAGTATTTTAGGTTTCAGGCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTGGTTCAATTCTAAACTCATCAGTATTTTAGGTTTCAGGCCTA  200

seq1  CCCAAGCTCAGTGAAGACCCTGCCTCAGATAGGTAGGTATAGTTAAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTCAGTGAAGACCCTGCCTCAGATAGGTAGGTATAGTTAAGTTG  250

seq1  GTCAGTCAATAGATGGATACTTTTGATCCAGGCACTGTGGCCCATTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCAATAGATGGATACTTTTGATCCAGGCACTGTGGCCCATTTCTG  300

seq1  TTGTCCTACCAACTTGAGGGTCTAAGTCAGAGTGGTTTGGAAAACAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTACCAACTTGAGGGTCTAAGTCAGAGTGGTTTGGAAAACAGCCT  350

seq1  CCCCAGTTTAGTGAGAACTTGTAATAGAAATACTGAGGAAATGTAAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTTTAGTGAGAACTTGTAATAGAAATACTGAGGAAATGTAAGCTG  400

seq1  GGACTGCAGCTTAGGGTGCAGTGCTTGTCTCTTGTCCTGGATGTAATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCAGCTTAGGGTGCAGTGCTTGTCTCTTGTCCTGGATGTAATCCT  450

seq1  GTTTTTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATT  500

seq1  ATTATTTTAAAGGTAGCCAGGTGTGGTTGTTCATGCCTTTAATCCCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTAAAGGTAGCCAGGTGTGGTTGTTCATGCCTTTAATCCCAGCA  550

seq1  CTCAGGCTCAGGCAGGATCTCTGAGATGGAGGCCAGCCTGGTCTACAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTCAGGCAGGATCTCTGAGATGGAGGCCAGCCTGGTCTACAGAG  600

seq1  CAAGTTCCAGGACAGCCAGGACTATACAGAGAAGCCCTGTCTCTGAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCCAGGACAGCCAGGACTATACAGAGAAGCCCTGTCTCTGAAAAG  650

seq1  CAAAACAACCCAACCAAACCAAAAAAAGGTGAAAAACAGGAATGTTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAACCCAACCAAACCAAAAAAAGGTGAAAAACAGGAATGTTTGTT  700

seq1  TGCAAATTCAGTGAACAGACAGACAGATGTCTCTTTCAGCCACCTCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTCAGTGAACAGACAGACAGATGTCTCTTTCAGCCACCTCTCCA  750

seq1  ATGCTGTGACCTACAGTAGGGACGCATCTTTTCTGCAGTACGCCATTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTGACCTACAGTAGGGACGCATCTTTTCTGCAGTACGCCATTGCT  800

seq1  CAGCCATCTAGATGAATGCGGAATCTCGGTGGCTAAGCATTTTGCTGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCTAGATGAATGCGGAATCTCGGTGGCTAAGCATTTTGCTGGGC  850

seq1  AGTTGAACACCTTGGAGGTATTAAATTGATTGATACAAGGCTTTCCGGTC  900
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  AGTTGAACACCTTGGAGGTATTAAATTGATTGATACA--GCTTTCCGGTC  898

seq1  AGTCCATCCTAGAGGATGTGATTGAAGGTGCTGACCTGGTTGGCTCTCCT  950
      |||||||||||||||||||||||| |||||||||||||| ||||||| ||
seq2  AGTCCATCCTAGAGGATGTGATTG-AGGTGCTGACCTGG-TGGCTCT-CT  945

seq1  GCTGGTTCATTTTAAAGTGAGGACCACTGGTCTCCCATAATGACCCAGGT  1000
      ||| ||||| |||||||||  |||||||||||| |||| |||||||||||
seq2  GCT-GTTCA-TTTAAAGTGGAGACCACTGGTCTTCCAT-ATGACCCAGGT  992

seq1  CCCCGTGCTGGGACAGTCAGGCCATCCTTTTGAACTTCAGTAGCTTCCGT  1050
       |||||||| ||||||||||  ||||  |||| ||||||||||||| |||
seq2  -CCCGTGCT-GGACAGTCAG--CATC--TTTGGACTTCAGTAGCTT-CGT  1035

seq1  GGCATTTGCTATGTTCTTTCCCATCCTGAACTTTAGCAGTCGCAGTCCCT  1100
       ||| ||||| ||||| ||||||| ||||   ||||||||||||||||  
seq2  -GCA-TTGCTTTGTTC-TTCCCAT-CTGA--CTTAGCAGTCGCAGTCC--  1077

seq1  TAGACAACAAAGCCAGGTTTGGGGCCCCGATTTGGAG-TCTGTGC-AGCT  1148
      || ||||||| |||| |||||||| |||||||  ||| ||||||| ||||
seq2  TA-ACAACAAGGCCA-GTTTGGGG-CCCGATT--GAGTTCTGTGCGAGCT  1122

seq1  TC-TTTTGAAACCTTGAGTGA  1168
      || ||||||| ||||||||||
seq2  TCTTTTTGAACCCTTGAGTGA  1143