BAC Information

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BAC

Clone NameB6Ng01-179D04
Chromosome14 (Build37)
Map Location 109,430,045 - 109,431,199
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668757, EG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179D04.bB6Ng01-179D04.g
ACCGA005986GA005987
length1,1541,041
definitionB6Ng01-179D04.b B6Ng01-179D04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattgaaagtctcaccacaggaacatgagtataaactggccaaa
ttgctagatttcttaagtgtctcatttttagatcatttctttctaatgaa
gaaataaaaatggttattagttattgtgtgtctctatgttgcagtgacat
tacaatcttgctatttttcatatttcactatttaactttgttaaacctct
taggtgttctgtatcttcgcttttagcttttactttagttttgagtattt
catgtgtgtataaaaggaaatatcatatgtacttcccattttatccttta
ggtccctcaatattcccttaaattcttgttctcagagtcatttttttttt
aaattttgtaccccactaagcctggttattgctgttcatatgtgaattat
gctagggctatctttcagagcatgggagtcttaacattggtcaacctcct
ccgagaagaagctcaaaaatgaatgatcttccctgcccaagcatctatta
ggttggcttgatcttgtgaaagtctcatgtgagtgttttagttagggttt
actgcactgaacacaccatgaccaaggtgacttttataaggacaacactt
aattggaactggctgtcaagttcagaggttcagtccattatcatcaagga
agaagcatggcaacttacagacagacatggtactggaggaactgagaact
ctacatcttcatctgaaggccactaagagaagactagcttccagtcagcc
agcagaactgtcttaaagcccactcccactgcaatacacttcctctaact
atgttacacctactccaacgaagccacacctcctaatagtgccactccct
aggccaaatatattcaatccaccatagtgagtcagaacattaatgcatat
gcattttttattgtgatagccatgccatgtctagaatacagcttttcata
agctctcctaccatcctccagcgggtatatcttttttttttttttccctt
gtggtacattgatgccctctttgttatttgaacacatggatatttgttta
tatatttgtctaaacacttgtccatgtcatctcattgttttccattagtc
aggattattagggagcatatcaacattccatgtttttaactttgaatttt
ttaa

gaattcatagccactatggctcaagatctccataccaagatccagataag
gatctccaagcctccagataagagtcagtggtgagccttccaattctgga
ttgtggttcattccaaatatagtcaagttgactaccaggaatagccacta
caataccaacaatggaggagtgttcctctttctccacatcctcgccagcc
tctgctgtcacctgaatttttgaccttagccattctgactggtgtgaagt
ggaatctcagggttgttttgatttgcattgccctgatgattaaggatgtt
gaacatttttttccaagtgcttctcagtcctttggtattccttagttgag
aattctttgtttagctctgtaccccattatttaatgggattatttgaatt
tctggagtccagcttctagagctctttgtatatattggatattattcccc
tatcagacttaggattggtaaaaatcttttcccaatctgttggtggcctt
tttgtcttattgacagtgtcttttgccttacagcagctttgcaattttat
gaggtcccatttgtcgattcttgaccttacaacacaagccattgctgttc
agttcaggaatttttcccgtgtccatatttttgaggcttttccccatgtt
ctcctctatagatttcaatgtctctggttttatgtggaggtctttgatcc
acttagacttgagcaatgtacaaggagataagaatggatcaattcacatt
ctactacatggtaatcaccacttatgccagcaatcatttgttgaaaatga
aaatgctgtcttttatccactggatggttttagattccttgtcaaagatc
aagtgaccataggtgtttgggttcatttttggatcttcaattctattcca
tctatctacctgttggttgctgtaccagtaccatgaagttttttatcaac
aattgctctgtagtacagcttgaagtctggcatggtgattttagcagagt
tcttttatgttgagatagtttttgtatcctagtgttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109430045_109431199
seq2: B6Ng01-179D04.b_42_1195

seq1  GAATTCAATTGAAAGTCTCACCACAGGAACATGAGTATAAACTGGCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGAAAGTCTCACCACAGGAACATGAGTATAAACTGGCCAAA  50

seq1  TTGCTAGATTTCTTAAGTGTCTCATTTTTAGATCATTTCTTTCTAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGATTTCTTAAGTGTCTCATTTTTAGATCATTTCTTTCTAATGAA  100

seq1  GAAATAAAAATGGTTATTAGTTATTGTGTGTCTCTATGTTGCAGTGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAAATGGTTATTAGTTATTGTGTGTCTCTATGTTGCAGTGACAT  150

seq1  TACAATCTTGCTATTTTTCATATTTCACTATTTAACTTTGTTAAACCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCTTGCTATTTTTCATATTTCACTATTTAACTTTGTTAAACCTCT  200

seq1  TAGGTGTTCTGTATCTTCGCTTTTAGCTTTTACTTTAGTTTTGAGTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTCTGTATCTTCGCTTTTAGCTTTTACTTTAGTTTTGAGTATTT  250

seq1  CATGTGTGTATAAAAGGAAATATCATATGTACTTCCCATTTTATCCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTATAAAAGGAAATATCATATGTACTTCCCATTTTATCCTTTA  300

seq1  GGTCCCTCAATATTCCCTTAAATTCTTGTTCTCAGAGTCATTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTCAATATTCCCTTAAATTCTTGTTCTCAGAGTCATTTTTTTTTT  350

seq1  AAATTTTGTACCCCACTAAGCCTGGTTATTGCTGTTCATATGTGAATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGTACCCCACTAAGCCTGGTTATTGCTGTTCATATGTGAATTAT  400

seq1  GCTAGGGCTATCTTTCAGAGCATGGGAGTCTTAACATTGGTCAACCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGCTATCTTTCAGAGCATGGGAGTCTTAACATTGGTCAACCTCCT  450

seq1  CCGAGAAGAAGCTCAAAAATGAATGATCTTCCCTGCCCAAGCATCTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAAGAAGCTCAAAAATGAATGATCTTCCCTGCCCAAGCATCTATTA  500

seq1  GGTTGGCTTGATCTTGTGAAAGTCTCATGTGAGTGTTTTAGTTAGGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCTTGATCTTGTGAAAGTCTCATGTGAGTGTTTTAGTTAGGGTTT  550

seq1  ACTGCACTGAACACACCATGACCAAGGTGACTTTTATAAGGACAACACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACTGAACACACCATGACCAAGGTGACTTTTATAAGGACAACACTT  600

seq1  AATTGGAACTGGCTGTCAAGTTCAGAGGTTCAGTCCATTATCATCAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAACTGGCTGTCAAGTTCAGAGGTTCAGTCCATTATCATCAAGGA  650

seq1  AGAAGCATGGCAACTTACAGACAGACATGGTACTGGAGGAACTGAGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCATGGCAACTTACAGACAGACATGGTACTGGAGGAACTGAGAACT  700

seq1  CTACATCTTCATCTGAAGGCCACTAAGAGAAGACTAGCTTCCAGTCAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTTCATCTGAAGGCCACTAAGAGAAGACTAGCTTCCAGTCAGCC  750

seq1  AGCAGAACTGTCTTAAAGCCCACTCCCACTGCAATACACTTCCTCTAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAACTGTCTTAAAGCCCACTCCCACTGCAATACACTTCCTCTAACT  800

seq1  ATGTTACACCTACTCCAACGAAGCCACACCTCCTAATAGTGCCACTCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACACCTACTCCAACGAAGCCACACCTCCTAATAGTGCCACTCCCT  850

seq1  AGGCCAAATATATTCAATCCACCATAGTGAGTCAGAACATTAATGCATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAATATATTCAATCCACCATAGTGAGTCAGAACATTAATGCATAT  900

seq1  GCATTTTTTATTGTGATAGCCATGCCATGTCTAGAATACAGCTTTTCATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTTATTGTGATAGCCATGCCATGTCTAGAATACAGCTTTTCATA  950

seq1  AGCTCTCCTACCCATCCTCCAGCGGTTATATCTTTTTTTTTTTTTTCCCT  1000
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  AGCTCTCCTA-CCATCCTCCAGCGGGTATATCTTTTTTTTTTTTTTCCCT  999

seq1  TGTGGTACATTGATGCCTTCTTTTGTTATTTGAACACAATGGATAATTTG  1050
      ||||||||||||||||| || |||||||||||||||| |||||| |||||
seq2  TGTGGTACATTGATGCCCTC-TTTGTTATTTGAACAC-ATGGAT-ATTTG  1046

seq1  TTTATATATTTGTCTAAACACTTTGTCCATGTCATTCTCATTGTTTTCCA  1100
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  TTTATATATTTGTCTAAACAC-TTGTCCATGTCA-TCTCATTGTTTTCCA  1094

seq1  TTAGTACAGGATTATTAAGGGAGCATATCCAAACATTTCTATGTTTT---  1147
      ||||| |||||||||| ||||||||||||  |||| ||| |||||||   
seq2  TTAGT-CAGGATTATT-AGGGAGCATATC--AACA-TTCCATGTTTTTAA  1139

seq1  -------TTTTTTAA  1155
             ||||||||
seq2  CTTTGAATTTTTTAA  1154


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