BAC Information

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BAC

Clone NameB6Ng01-179D05
Chromosome14 (Build37)
Map Location 110,710,196 - 110,898,359
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC640892
Downstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179D05.bB6Ng01-179D05.g
ACCGA005988GA005989
length220814
definitionB6Ng01-179D05.b B6Ng01-179D05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,898,141 - 110,898,359)(110,710,196 - 110,711,013)
sequence
cctaggtgttgttcacactacaatgctagctatatagagaacactcacat
gatactatgtccctcagtcggagaactagtttgttggttatctctctaga
agtaaagttttattggtgcattagtttaaataattaaatctccaatgcta
cattttttggaggggggtttccaataatgtagagtgtcagttaatgctaa
gtaggtgggtgggtgggtgg
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatccaacgagatgatcatgtgggaaccctgatc
tttcctaataggatcctgatgggaggagaatggggacagagtgagagaca
tagagagatgggaaattctatttagagaaaataatatattttcaataata
aggggaataatatgccaacataacagggaaaaaagtcaagttgcactagg
gtataaaaaatctaaataatcatagtcatttactgtatatctatgctttt
gtaaatattttcaagacaaaaatggtgtgaataaactctgagaggtttta
gggcttaatttttctagaattatatttgtttagttgccttttctctttca
tttatataataataaaacattttacagctttagagttttcaatatctaga
tataagggttattaaatgcttcaacctcccttctcacttaatgaccaaag
ataagggaaagaaaggctaataggaaacacagcagggaatatggatctgt
ttaaaagtagttctttggggtgaatccaaacccgattcagtagtagcaat
ccagtctaattgtaaattctaaacacagatctgtatcagctatccagaag
atccagaagaaaccacaggcacaaatgaatcaacatgaatcagcagagtg
gcaagaaagagaatttttactgtctatgacgtcatgccaaagaggatcag
aaagaccaacaaagcattccaggtgaacaaatgcatcatctcactgtctg
taggatcagatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_110898141_110898359
seq2: B6Ng01-179D05.b_50_269 (reverse)

seq1  CCACCCACCCACCCACCTACTTAGCATTAACTGACACTCTACATTATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACCCACCCACCTACTTAGCATTAACTGACACTCTACATTATTGG  50

seq1  AAACCCCCCTCCAAAAAATGTAGCATTGGAGATTTAATTATTTAAACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCCCTCCAAAAAATGTAGCATTGGAGATTTAATTATTTAAACTAA  100

seq1  TGCACCAATAAAACTTTACTTCTAGAGAGATAACCAACAAACTAGTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCAATAAAACTTTACTTCTAGAGAGATAACCAACAAACTAGTTCTC  150

seq1  CGACTGAGGGACATAGTATCATGTGAGTGTTCTC-CTATAGCTAGCATTG  199
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  CGACTGAGGGACATAGTATCATGTGAGTGTTCTCTATATAGCTAGCATTG  200

seq1  TAGTGTGAACAACACCTAGG  219
      ||||||||||||||||||||
seq2  TAGTGTGAACAACACCTAGG  220

seq1: chr14_110710196_110711013
seq2: B6Ng01-179D05.g_71_884

seq1  GAATTCCTGATCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATCTTG  50

seq1  TCAAATGCTTTTTCTGCATCCAACGAGATGATCATGTGGGAACCCTGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCTTTTTCTGCATCCAACGAGATGATCATGTGGGAACCCTGATC  100

seq1  TTTCCTAATAGGATCCTGATGGGAGGAGAATGGGGACAGAGTGAGAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAATAGGATCCTGATGGGAGGAGAATGGGGACAGAGTGAGAGACA  150

seq1  TAGAGAGATGGGAAATTCTATTTAGAGAAAATAATATATTTTCAATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGATGGGAAATTCTATTTAGAGAAAATAATATATTTTCAATAATA  200

seq1  AGGGGAATAATATGCCAACATAACAGGGAAAAAAGTCAAGTTGCACTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATAATATGCCAACATAACAGGGAAAAAAGTCAAGTTGCACTAGG  250

seq1  GTATAAAAAATCTAAATAATCATAGTCATTTACTGTATATCTATGCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAAAATCTAAATAATCATAGTCATTTACTGTATATCTATGCTTTT  300

seq1  GTAAATATTTTCAAGACAAAAATGGTGTGAATAAACTCTGAGAGGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATTTTCAAGACAAAAATGGTGTGAATAAACTCTGAGAGGTTTTA  350

seq1  GGGCTTAATTTTTCTAGAATTATATTTGTTTAGTTGCCTTTTCTCTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTAATTTTTCTAGAATTATATTTGTTTAGTTGCCTTTTCTCTTTCA  400

seq1  TTTATATAATAATAAAACATTTTACAGCTTTAGAGTTTTCAATATCTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAATAATAAAACATTTTACAGCTTTAGAGTTTTCAATATCTAGA  450

seq1  TATAAGGGTTATTAAATGCTTCAACCTCCCTTCTCACTTAATGACCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGGTTATTAAATGCTTCAACCTCCCTTCTCACTTAATGACCAAAG  500

seq1  ATAAGGGAAAGAAAGGCTAATAGGAAACACAGCAGGGAATATGGATCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGAAAGAAAGGCTAATAGGAAACACAGCAGGGAATATGGATCTGT  550

seq1  TTAAAAGTAGTTCTTTGGGGTGAATCCAAACCCGATTCAGTAGTAGCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTAGTTCTTTGGGGTGAATCCAAACCCGATTCAGTAGTAGCAAT  600

seq1  CCAGTCTAATTGTAAATTCTAAACACAGATCTGTATCAGCTATCCAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTAATTGTAAATTCTAAACACAGATCTGTATCAGCTATCCAGAAG  650

seq1  ATCCAGAAGAAACCACAGGCACAAATGAATCAACATGAATCAGCAGAAGT  700
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCCAGAAGAAACCACAGGCACAAATGAATCAACATGAATCAGCAG-AGT  699

seq1  GGCAAGAAAGAGAATTTTTACTGTCTATGACGTCATGCCAAAGAGGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAAAGAGAATTTTTACTGTCTATGACGTCATGCCAAAGAGGATCA  749

seq1  GAAAAGACCAACAAAGCATTCCAAGGTGAACAAATGCAATCATCTCACTG  800
      | |||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  G-AAAGACCAACAAAGCATTCC-AGGTGAACAAATGC-ATCATCTCACTG  796

seq1  TCTGTAGGATCAGATGTA  818
      ||||||||||||||||||
seq2  TCTGTAGGATCAGATGTA  814