BAC Information

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BAC

Clone NameB6Ng01-179K16
Chromosome14 (Build37)
Map Location 108,949,476 - 109,113,375
singlet/doubletdoublet
Overlap geneEG668761
Upstream geneLOC668752, EG668754, LOC668757
Downstream geneSlitrk1, LOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179K16.bB6Ng01-179K16.g
ACCGA006323GA006324
length1,129860
definitionB6Ng01-179K16.b B6Ng01-179K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,112,277 - 109,113,375)(108,949,476 - 108,950,132)
sequence
gaattctacacagggtatgagggagttctgatgagactgtatcccttgat
tactttgtacaactaaagacaacattaggaagtctccttttctgattgag
tatcctccaaggagtggcgcatgggtctttaaagttttgggggtttgttt
tgctttttaagttctctatgcctcttgctcctccttcttacatccaagat
gaaacaacagcaaaatatacattattcatgaaatgtaagtaaataaactc
tggttatcaaaagaaaaatacaagcctggatggactatactgaaaacaaa
cagaattgtatcagtcctggaatcaagaatgggtaatacaggtaagaaga
gtaatattccatgtgttgttctaaatgttgtatataacaaaaacacaaat
cagtttctattttctgtactaggacacatcagaggttggggaatccttaa
caactgatgagcatccatcaatgtctgattagaacactccaaatacctaa
tggacaatgagtaatatagtgatggcattaaaaacactactctaaggcta
gagaaactgttcaatggctaagagacctagttatccaactcacagggcaa
gtcacagtaatctgaactttagagaattggggtttcttacatggccaatg
gtcacacatttatttgcaaatcatgagatgacaagtagatacagtaaata
acaaaaaacaaaataaaagaattctacacaggatatgagggagttctgag
tttggaacccacagtttttagagaaatccaatattttattctggcctcca
agaatagtaggggcttaaaacaggcatatgttataaatgaaaaacacata
tacacacaaaatgatatcaataacaagatattttccaagaaagaagaatg
ggaagtactacttagaggcagccattttattttattttctcacctgaata
aagagaccctagtgtatacctggattatctcatgaaccaagctaacagtg
atgcagaaaggttcatttctatttctccaaacttcaccatatattcgtgt
ttgttgaaaacaatttttcccattgctttggattcaactttttattatag
aaaatatataacataaacaaaaatatatt
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtccggtttgtcaatctttcttagtagactgtgatttacaacgtga
cccacctgtcagagttttgggaatatgagaccgataaggactggacccta
actgagacacctcttccctaggctaaggggtcattgggtatgaggaggca
taccaactgtaactacgaggaaatagtgtatgccagacagagtaaggcaa
gaggaagtttggactcagcagttttgatggcatacaattttaataagctc
atgaaagatgaaatctcagcatagagtagagaaattgacatgaagtccca
tctctactcaaagagctaaaaaacaaaaacaaaaacaaaaaacacacaac
aaaaaaaaaacatcagtagctgcatggaggcaggaagaatgcagtttctt
ttagaggtatatccatcgtaaacccagcatgtgctccatgaaaggccaca
catgaataatatgtagataattccaatgatttgggtgtgtttaaggacca
gaggattgagttatgggcaggcaggtgatagactcagtggaatgcgatgg
agttaaccagcctgaacctcattttgagaatttcagaactttaagttaga
aagattacctggccatacctatgtggaaagaatttagaataatctgacta
tgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109112277_109113375
seq2: B6Ng01-179K16.b_45_1173 (reverse)

seq1  AATAT-TTTTTG-TTATGT--TATATTTTCTATAATAAAA--GTGAAT-C  43
      ||||| |||||| ||||||  |||||||||||||||||||   ||||| |
seq2  AATATATTTTTGTTTATGTTATATATTTTCTATAATAAAAAGTTGAATCC  50

seq1  AAAGCAATGG--AAAAT--GTTTCACAAAACAC--AAATATGGTG-AGT-  85
      ||||||||||  |||||   |||||  ||||||  | |||||||| ||| 
seq2  AAAGCAATGGGAAAAATTGTTTTCAACAAACACGAATATATGGTGAAGTT  100

seq1  --GGGAGATAG-AATG-ACCTTTCTGCATCACTGTTAGCTTGG-TCAT-A  129
        | || |||| |||| |||||||||||||||||||||||||| |||| |
seq2  TGGAGAAATAGAAATGAACCTTTCTGCATCACTGTTAGCTTGGTTCATGA  150

seq1  GATAAT-CAGGTATACACTAGGGTCTCTTTATTCA-GTGAGAAA--TAAA  175
      |||||| |||||||||||||||||||||||||||| ||||||||   |||
seq2  GATAATCCAGGTATACACTAGGGTCTCTTTATTCAGGTGAGAAAATAAAA  200

seq1  TAAAATGGCTGCCTCT-AGTAGTACTTCCCATTCTTCTTTCTTGG-AAAT  223
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  TAAAATGGCTGCCTCTAAGTAGTACTTCCCATTCTTCTTTCTTGGAAAAT  250

seq1  ATCTTTGTTATTGATATCATTTTGTGTGTATATGTGTTTTTCATTTATAA  273
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATC-TTGTTATTGATATCATTTTGTGTGTATATGTGTTTTTCATTTATAA  299

seq1  CATATGCCTG-TTTAAGCCCCTACTATTCTTGGAGGCCAGAATAAAATAT  322
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATATGCCTGTTTTAAGCCCCTACTATTCTTGGAGGCCAGAATAAAATAT  349

seq1  TGGA-TTCTCT-AAAACTGTGGGTTCCAAACTCAGAACTCCCTCATATCC  370
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCTCTAAAAACTGTGGGTTCCAAACTCAGAACTCCCTCATATCC  399

seq1  TGTGTAGAATTCTTTTATTTTGTTTTTTGTTATTTACTGTATCTACTTGT  420
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGAATTCTTTTATTTTGTTTTTTGTTATTTACTGTATCTACTTGT  449

seq1  CATCTCATGATTTGCAAAT-AATGTGTGACCATTGGCCATGTAAGAAACC  469
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATCTCATGATTTGCAAATAAATGTGTGACCATTGGCCATGTAAGAAACC  499

seq1  CCAATTCTCTAAAGTTCAGATTACTGTGACTTGCCCTGTGAGTTGGATAA  519
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCTCTAAAGTTCAGATTACTGTGACTTGCCCTGTGAGTTGGATAA  549

seq1  CTAGGTCTCTTAGCCATTGAACAGTTTCTCTAGCCTTAGAGTAGTGTTTT  569
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCTCTTAGCCATTGAACAGTTTCTCTAGCCTTAGAGTAGTGTTTT  599

seq1  TAATGCCATCACTATATTACTCATTGTCCATTAGGTATTTGGAGTGTTCT  619
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCATCACTATATTACTCATTGTCCATTAGGTATTTGGAGTGTTCT  649

seq1  AATCAGACATTGATGGATGCTCATCAGTTGTTAAGGATTCCCCAACCTCT  669
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGACATTGATGGATGCTCATCAGTTGTTAAGGATTCCCCAACCTCT  699

seq1  GATGTGTCCTAGTACAGAAAATAGAAACTGATTTGTGTTTTTGTTATATA  719
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTCCTAGTACAGAAAATAGAAACTGATTTGTGTTTTTGTTATATA  749

seq1  CAACATTTAGAACAACACATGGAATATTACTCTTCTTACCTGTATTACCC  769
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTAGAACAACACATGGAATATTACTCTTCTTACCTGTATTACCC  799

seq1  ATTCTTGATTCCAGGACTGATACAATTCTGTTTGTTTTCAGTATAGTCCA  819
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGATTCCAGGACTGATACAATTCTGTTTGTTTTCAGTATAGTCCA  849

seq1  TCCAGGCTTGTATTTTTCTTTTGATAACCAGAGTTTATTTACTTACATTT  869
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTTGTATTTTTCTTTTGATAACCAGAGTTTATTTACTTACATTT  899

seq1  CATGAATAATGTATATTTTGCTGTTGTTTCATCTTGGATGTAAGAAGGAG  919
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATAATGTATATTTTGCTGTTGTTTCATCTTGGATGTAAGAAGGAG  949

seq1  GAGCAAGAGGCATAGAGAACTTAAAAAGCAAAACAAACCCCCAAAACTTT  969
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGAGGCATAGAGAACTTAAAAAGCAAAACAAACCCCCAAAACTTT  999

seq1  AAAGACCCATGCGCCACTCCTTGGAGGATACTCAATCAGAAAAGGAGACT  1019
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCCATGCGCCACTCCTTGGAGGATACTCAATCAGAAAAGGAGACT  1049

seq1  TCCTAATGTTGTCTTTAGTTGTACAAAGTAATCAAGGGATACAGTCTCAT  1069
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATGTTGTCTTTAGTTGTACAAAGTAATCAAGGGATACAGTCTCAT  1099

seq1  CAGAACTCCCTCATACCCTGTGTAGAATTC  1099
      ||||||||||||||||||||||||||||||
seq2  CAGAACTCCCTCATACCCTGTGTAGAATTC  1129

seq1: chr14_108949476_108950132
seq2: B6Ng01-179K16.g_310_928

seq1  ACAACGTGACCCACCTGTCAGAGTTTTGGGAATATGAGACCGATAAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGTGACCCACCTGTCAGAGTTTTGGGAATATGAGACCGATAAGGAC  50

seq1  TGGACCCTAACTGAGACACCTCTTCCCTAGGCTAAGGGGTCATTGGGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCTAACTGAGACACCTCTTCCCTAGGCTAAGGGGTCATTGGGTAT  100

seq1  GAGGAGGCATACCAACTGTAACTACGAGGAAATAGTGTATGCCAGACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGCATACCAACTGTAACTACGAGGAAATAGTGTATGCCAGACAGA  150

seq1  GTAAGGCAAGAGGAAGTTTGGACTCAGCAGTTTTGATGGCATACAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCAAGAGGAAGTTTGGACTCAGCAGTTTTGATGGCATACAATTTT  200

seq1  AATAAGCTCATGAAAGATGAAATCTCAGCATAGAGTAGAGAAATTGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCTCATGAAAGATGAAATCTCAGCATAGAGTAGAGAAATTGACAT  250

seq1  GAAGTCCCATCTCTACTCAAAGAGCTAAAAAAACAAAAAACAAAAAACAA  300
      ||||||||||||||||||||||||||||||||   |||||||||||  ||
seq2  GAAGTCCCATCTCTACTCAAAGAGCTAAAAAA--CAAAAACAAAAACAAA  298

seq1  AAAAACAACAACAACAAAAAAAAAAAACAATCAGTAGCTGCATGGAGGGC  350
      ||| ||    |||||||||||||||    ||||||||||||||||| |||
seq2  AAACAC----ACAACAAAAAAAAAA---CATCAGTAGCTGCATGGA-GGC  340

seq1  AGGAAGAATGCAGTTTCTTTTAGA-GTATATCCATCGTAAACCCAGCATG  399
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGAAGAATGCAGTTTCTTTTAGAGGTATATCCATCGTAAACCCAGCATG  390

seq1  TGCT-CATGAAAGGCCACACATTGAATAATATGTAGATAATTCCAATTGT  448
      |||| |||||||||||||||| |||||||||||||||||||||||| || 
seq2  TGCTCCATGAAAGGCCACACA-TGAATAATATGTAGATAATTCCAA-TGA  438

seq1  ATTTGGTGTGTTTTAAAAAGAAACAAAGAGGATATAGAGTTTATTGGGCA  498
       || |||||||||    ||| | |  |||||  || |||||   ||||||
seq2  TTTGGGTGTGTTT----AAGGACC--AGAGG--ATTGAGTT--ATGGGCA  478

seq1  GGGCAGGTGATAGATCTCAGTGGAATGCGAATGAGTGTTAACAAGCTGAA  548
       ||||||||||||| |||||||||||||||  ||  |||||| |||   |
seq2  -GGCAGGTGATAGA-CTCAGTGGAATGCGATGGA--GTTAACCAGCCTGA  524

seq1  ACTTCATTTTATGAAAATTTTAAGAAACTTATAAGTTAGAAAAAGATTAC  598
      || ||||||  ||| ||||| |   ||||| ||||||||  |||||||||
seq2  ACCTCATTT--TGAGAATTTCA--GAACTT-TAAGTTAG--AAAGATTAC  567

seq1  ATTGACACATACATAGTTAGAAAAGATATTAGAGATTAATTTGTACTTAT  648
       | |   ||||| ||  | ||||  || |   ||| |||| || || |||
seq2  CTGG--CCATACCTATGTGGAAAGAATTT---AGAATAATCTG-AC-TAT  610

seq1  GTGTGTGTG  657
      |||||||||
seq2  GTGTGTGTG  619