BAC Information

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BAC

Clone NameB6Ng01-180F07
Chromosome14 (Build37)
Map Location 25,086,907 - 25,224,341
singlet/doubletdoublet
Overlap geneLOC100039335, E330034G19Rik, LOC669325
Upstream geneKcnma1, LOC620499, Dlg5
Downstream genePolr3a, Rps24, LOC669315, LOC100039411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180F07.bB6Ng01-180F07.g
ACCGA006796GA006797
length959926
definitionB6Ng01-180F07.b B6Ng01-180F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,223,835 - 25,224,341)(25,086,907 - 25,087,822)
sequence
gaattccttataaccccatgggacaagaaattgttgaacgggctcacaac
actctgaaaaattggcttttaaaaacaaaacaggggcagttataccctgc
aaagtcaccaaaagcacatcttgcttttgtcttgtttgttttaaattatt
ttgcaaactgatgttaaaggtcagtctgcagcagatcgccactggcatcc
agttacttccagttcttatgccatggttaaatggtgggacccattaacta
atacatggaatggtccagaccctgttttaatctggggaagaggttctatc
tgtgttttttcacaaaaagaagacagagcgcgatggctgcctgaaagact
ggttcgtcaagtggacacagatcccgaatcttctagtaagtatgattctt
aacttcgttgatggctaaaaaccctttttagctgaaaaagttaatttgga
gcacagcctccactttcagagaattttcagcttttctgctaattctcaaa
gtcacctccctcacactgggaggtcagagtctgagcttaatcgttgctat
tttgcaactgaataaagtacctggacttccccaaagaagcttttatcctg
atgtctttcaactatctcaactttgtttttcaagcaggtcagtctctcct
tacagcctgatttcagcaagcgtgcaacctcgcctccagcaaaatgcagg
tggcagaaattcatcaataggaagaaacatattaagtatatattgtggct
ttggtctgatttaggaataaaggtgtgctaagagggctggtcagccaatg
actcgcaaaccagatttcgggagctatatcaaatctaagacagaggtaca
tgcccaagaggacgtggctttgttaaataatacaacacagagccatgttt
gtgtaaaataaatacaaacaagctgcatgttatgcttctttgacagataa
gagtggctc

gaattcctgtgttatgtaataaatttgttaatgatgccatggtccgtgtc
tctattaaaaagaaaaactcttatttagttcatctggagtccactgttca
aaatgagtaccgtggttccaaaatggaatcacatcgccattcatgaggca
ggtaagggaagaagcttggctctcctctctcaccgagaaagcagcagctg
ggatctgaggcctcacaatgattgtggaagccaaggctgcaaaggtctcc
aaccaaccagttggcagcttccattcagggttggactctcctgacaggcc
ttgctcagagattaccaagtaggacagcagtcatatgctttgctcggatg
gctagcctgggtcctctgctcagggtacatcctcaggagtctgtgcctaa
gaggagaagaccctaaagggacagcttggaagtcagaacaccacccacca
gtgtcagaaggacctctgtcttcagcttgatggagcctgctgctgtgcag
agcctgtctacaagagaagggtcctgaatgcaccatcgtgatctgaaacc
acaggagggagaatgaatggcacatggcatctatatcagagcaccatgtt
ttgatggggagaggtgtggctggcagtgggaggtggcagcaggactgctg
ataccaggaagggatcttagggggtgatgtcatactctgtgacatgctcc
ctttcagccaatcacactggcccctgcaaactaaattcccagaatgccac
acatggacctgtacacaaagctcacaggaacacacctggggcatccatcc
aaccaagtgtccacttgacaagcacctggacaggacatacttctcatttc
atgggggtaccaagcaaaatggccctgggtttgcccctgctcctttcact
gctcctttgctaatagtatttattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_25223835_25224341
seq2: B6Ng01-180F07.b_488_1004 (reverse)

seq1  GAGCCACTCTTATCTGTC-AAGGAGCAT-ACATGCAGCTTGTTTGTATTT  48
      |||||||||||||||||| ||| ||||| |||||||||||||||||||||
seq2  GAGCCACTCTTATCTGTCAAAGAAGCATAACATGCAGCTTGTTTGTATTT  50

seq1  ATTTTACACAAACATGGCTCTGTGTTGTATTA-TTAAC-AAGCCACGTCC  96
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  ATTTTACACAAACATGGCTCTGTGTTGTATTATTTAACAAAGCCACGTCC  100

seq1  TCTT-GGCATGTACCTCTGTCTTAGA-TTGATATAGCT-CCGAAATCTGG  143
      |||| ||||||||||||||||||||| ||||||||||| |||||||||||
seq2  TCTTGGGCATGTACCTCTGTCTTAGATTTGATATAGCTCCCGAAATCTGG  150

seq1  -TTGCGAGTCATTGGCTGACCAGCCCTCTTAGCACACC-TTATTCCTAAA  191
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTGCGAGTCATTGGCTGACCAGCCCTCTTAGCACACCTTTATTCCTAAA  200

seq1  TCAGACCAAAGCCACAATATATACTTAATATGTTTCTTCCTATTGATGAA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCAAAGCCACAATATATACTTAATATGTTTCTTCCTATTGATGAA  250

seq1  TTTCTGCCACCTGCA-TTTGCTGGAGGCGAGGTTGCACGCTTGCTGAAAT  290
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTCTGCCACCTGCATTTTGCTGGAGGCGAGGTTGCACGCTTGCTGAAAT  300

seq1  CAGGCTGTAAGGAGAGACTGACCTGCTTGAAAAACAAAGTTGAGATAGTT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTAAGGAGAGACTGACCTGCTTGAAAAACAAAGTTGAGATAGTT  350

seq1  GAAAGACATCAGGATAAAAGCTTCTTTGGGGAAGTCCAGGTACTTTATTC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACATCAGGATAAAAGCTTCTTTGGGGAAGTCCAGGTACTTTATTC  400

seq1  AGTTGCAAAATAGCAACGATTAAGCTCAGACTCTGACCTCCCAGTGTGAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAAAATAGCAACGATTAAGCTCAGACTCTGACCTCCCAGTGTGAG  450

seq1  GGAGGTGACTTTGAGAATTAGCAGAAAAGCTGAAAATTCTCTGAAAGTGG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGACTTTGAGAATTAGCAGAAAAGCTGAAAATTCTCTGAAAGTGG  500

seq1  AGGCTGTGCTCCAAATT  507
      |||||||||||||||||
seq2  AGGCTGTGCTCCAAATT  517


seq1: chr14_25086907_25087822
seq2: B6Ng01-180F07.g_70_995

seq1  GAATTCCTGTGTTATGTAATAAATTTGTTAATGATGCCATGGTCCGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGTTATGTAATAAATTTGTTAATGATGCCATGGTCCGTGTC  50

seq1  TCTATTAAAAAGAAAAACTCTTATTTAGTTCATCTGGAGTCCACTGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAAAAAGAAAAACTCTTATTTAGTTCATCTGGAGTCCACTGTTCA  100

seq1  AAATGAGTACCGTGGTTCCAAAATGGAATCACATCGCCATTCATGAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTACCGTGGTTCCAAAATGGAATCACATCGCCATTCATGAGGCA  150

seq1  GGTAAGGGAAGAAGCTTGGCTCTCCTCTCTCACCGAGAAAGCAGCAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGGAAGAAGCTTGGCTCTCCTCTCTCACCGAGAAAGCAGCAGCTG  200

seq1  GGATCTGAGGCCTCACAATGATTGTGGAAGCCAAGGCTGCAAAGGTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGAGGCCTCACAATGATTGTGGAAGCCAAGGCTGCAAAGGTCTCC  250

seq1  AACCAACCAGTTGGCAGCTTCCATTCAGGGTTGGACTCTCCTGACAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACCAGTTGGCAGCTTCCATTCAGGGTTGGACTCTCCTGACAGGCC  300

seq1  TTGCTCAGAGATTACCAAGTAGGACAGCAGTCATATGCTTTGCTCGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGAGATTACCAAGTAGGACAGCAGTCATATGCTTTGCTCGGATG  350

seq1  GCTAGCCTGGGTCCTCTGCTCAGGGTACATCCTCAGGAGTCTGTGCCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCTGGGTCCTCTGCTCAGGGTACATCCTCAGGAGTCTGTGCCTAA  400

seq1  GAGGAGAAGACCCTAAAGGGACAGCTTGGAAGTCAGAACACCACCCACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAGACCCTAAAGGGACAGCTTGGAAGTCAGAACACCACCCACCA  450

seq1  GTGTCAGAAGGACCTCTGTCTTCAGCTTGATGGAGCCTGCTGCTGTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGAAGGACCTCTGTCTTCAGCTTGATGGAGCCTGCTGCTGTGCAG  500

seq1  AGCCTGTCTACAAGAGAAGGGTCCTGAATGCACCATCGTGATCTGAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTCTACAAGAGAAGGGTCCTGAATGCACCATCGTGATCTGAAACC  550

seq1  ACAGGAGGGAGAATGAATGGCACATGGCATCTATATCAGAGCACCATG-T  599
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACAGGAGGGAGAATGAATGGCACATGGCATCTATATCAGAGCACCATGTT  600

seq1  TTGATGGGGAGAGGTGTGGCTGGCAGTGGGAGGTGGCAGCAGGACTGCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGGGAGAGGTGTGGCTGGCAGTGGGAGGTGGCAGCAGGACTGCTG  650

seq1  ATACCAGGAA-GGATCTTA-GGGGTGATGTCATACTCTGTGACATGCT-C  696
      |||||||||| |||||||| |||||||||||||||||||||||||||| |
seq2  ATACCAGGAAGGGATCTTAGGGGGTGATGTCATACTCTGTGACATGCTCC  700

seq1  CTTTCAGCC-ATCACACTGGCCCCTGCAAACT-AATTCCCAGAATGCCAC  744
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  CTTTCAGCCAATCACACTGGCCCCTGCAAACTAAATTCCCAGAATGCCAC  750

seq1  ACATGGACCTGTACACAAAGCTCACAGGAACACACCT-GGGCATCCATCC  793
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACATGGACCTGTACACAAAGCTCACAGGAACACACCTGGGGCATCCATCC  800

seq1  AACCAAGTGTCCACTTGACAAGCACCT-GACAGGACATACCTCTCATTTC  842
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  AACCAAGTGTCCACTTGACAAGCACCTGGACAGGACATACTTCTCATTTC  850

seq1  AAGGGGGTCACAAGCAAAATGG-CCTGGGTTTGCCCCTGCTCCTTTCCAC  891
      | ||||||  |||||||||||| ||||||||||||||||||||||| |||
seq2  ATGGGGGTACCAAGCAAAATGGCCCTGGGTTTGCCCCTGCTCCTTT-CAC  899

seq1  TGCT-CTTTGCT-ATAGTATTTATTAT  916
      |||| ||||||| ||||||||||||||
seq2  TGCTCCTTTGCTAATAGTATTTATTAT  926


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