BAC Information

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BAC

Clone NameB6Ng01-180H13
Chromosome14 (Build37)
Map Location 80,464,621 - 80,572,733
singlet/doubletdoublet
Overlap genenone
Upstream gene1300010F03Rik, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180H13.bB6Ng01-180H13.g
ACCGA006891GA006892
length1,1461,079
definitionB6Ng01-180H13.b B6Ng01-180H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,571,579 - 80,572,733)(80,464,621 - 80,465,704)
sequence
gaattccagagagttattataatgagaagaacctttcaacaatgatgctc
tgtctggtgatcacaccaagaccccagatgtgactaaagtcgtggagagg
aatgtcagtaggggacactagagaaaggggctatgaaaacgagaaaggat
ggagaaagcaatggctactaagaaatattattcagatttttagataagaa
cagagtggttgatgtttattaaacagaagatcattaacagtacacaaaac
tcagggtaattctcgttttttaaatgagaatctatgggatctaaaaaaaa
aatggttgcattgaactagccaacaaatacaggtctttgttttaaattta
cataaccccttggaagcctctaccacctcccgctactgcccccaggagtc
ctcccctactgcccccaggagtcctcccctactgcccccaggagtcctcc
cctactgcccccaggagtcctcccttactgcccccaggagtcctccccta
gagttctgctactttggatcaactgtctagcagaatgactttgaacaggt
cactggacttcagagtccatctctgcaaacaagagcatccactccaagca
cggtgacagcttcctgcctcaaaattacctgtcaaatgtatttcaaatgt
acatttctggatctcttcataaatttaatacatcgaaatctctgtggtag
gatgcccaaggttcaattattaatttctcttaataaggctgaaggactgg
tagaacagctggtttctgaaacatcttttagatgcaaaatcctgttgctc
tggcggtagatgtggtacccaaggaaatctcagtacattcaaaattggtc
ctaaaacaaacaaacaaacaaaacctctcaaaatagtttcatgtagtgaa
aattatttttaaccacaagaagtaattttgatgacttaagttacttccaa
gatctagttccttcttgaaagataaagattgatttctaaacagacagtga
ataaaaacttcaaatttaggacttttccgggaaatgccctagcaccacat
catttttgaaaacagaactctattgggtgattttaaggagcccgtactct
ttggggaattgatgatttaagttgtgcttagctttttaacagctga
gaattctatgaaatggagtgcttctagagtggagtctccactgctgtcca
tcagtgtccctcttcctgggatgcttttccactacagcattcccatgcac
tcccttggcccttcatgcctgacccattgtggatccaatgctgagctgga
cacagaacaggccggtaagtaggtctaataactgagaaatcctttcactt
gcccattgatgccttttggaggacagaaagtaatgatgggagagaagagc
agcaacataagtactttcgtattggaactgaaaggggataaagaggggat
ctccatccactggaaggcatgaggttatattgctggtaggaggagtagag
gtagatattaaacttttattcagatgtgaggttactatgggagaggacag
aggggacaggaatataaacactccatgttaagtctcccacaatgctgctc
tcctttttaaagtacacaccagagcctctagggtctggtattagaagagg
tcaattaggcagggaaggccactggcctacaatagagatctggctttggc
aggaggaagtgtaaaatggagagaaatgaacagaataagcagggaattgt
aactgagtagcagggaaagaatcagtataatttcacaatttctaaccttg
gcgatcctaaggaccaaggaatttcctgggccaaagtgtagactgaatgt
aattagacatgcttctccaactgaagtcatagacaggatgaaaacactat
taaaaattgtagaaaagtcacaccaaaaagcaagaaaactagtgggctgg
gagtgaagcttactggtacagcactttggtataaagccctaagttccatc
caaatacagccaaaatcaagagaatgagggatggtgctggaaagatagct
cagcagctaagaacacttgctgctcctgttgagaatctcagttgagcttc
cagtaactacatgtggctcaacatcatgcataatttcagtttcaggaatt
tcatactgtttctgacctccctggtaccagtaagacacacagtacacaac
ccacatgaaaggtaagaacccctcatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80571579_80572733
seq2: B6Ng01-180H13.b_43_1188 (reverse)

seq1  TCAGCTGTTAAAAAGCTAGGCACAAAACTAAAAATCATTCATTTCCCCCA  50
      |||||||||||||||||| ||||  ||||  |||||||  |||  |||||
seq2  TCAGCTGTTAAAAAGCTAAGCAC--AACT-TAAATCATCAATT--CCCCA  45

seq1  AAGAGTACGGGCTCCTTTAAAATCAACCCAATAGAGGTCTGTTTTCAAAA  100
      ||||||||||||||| |||||||| ||||||||||| |||||||||||||
seq2  AAGAGTACGGGCTCC-TTAAAATC-ACCCAATAGAGTTCTGTTTTCAAAA  93

seq1  ATGATGTGTGGCCTAGGGCATTTTCCGGAAAAGTCCTAAATTTGAAGTTT  150
      |||||||| |  ||||||||||| ||||||||||||||||||||||||||
seq2  ATGATGTG-GTGCTAGGGCATTTCCCGGAAAAGTCCTAAATTTGAAGTTT  142

seq1  TTATTCACTGTCTGTTTAGAAATCAATCTTTATCTTTCAAGAAGGAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCACTGTCTGTTTAGAAATCAATCTTTATCTTTCAAGAAGGAACTA  192

seq1  GATCTTGGAAGTAACTTAAAGTCATCAAAATTACTTCTTGTGGTTAAAAA  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATCTTGGAAGTAACTT-AAGTCATCAAAATTACTTCTTGTGGTTAAAAA  241

seq1  TAATTTTCACTACATGGAACTATTTTGAGAGGTTTTGTTTGTTTGTTTGT  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAATTTTCACTACATGAAACTATTTTGAGAGGTTTTGTTTGTTTGTTTGT  291

seq1  TTTAGGACCAATTTTGAATGTACTGAGATTTCCTTGGGTACCACATCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGACCAATTTTGAATGTACTGAGATTTCCTTGGGTACCACATCTAC  341

seq1  CGCCAGAGCAACAGGATTTTGCATCTAAAAGATGTTTCAGAAACCAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGAGCAACAGGATTTTGCATCTAAAAGATGTTTCAGAAACCAGCTG  391

seq1  TTCTACCAGTCCTTCAGCCTTATTAAGAGAAATTAATAATTGAACCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCAGTCCTTCAGCCTTATTAAGAGAAATTAATAATTGAACCTTGG  441

seq1  GCATCCTACCACAGAGATTTCGATGTATTAAATTTATGAAGAGATCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTACCACAGAGATTTCGATGTATTAAATTTATGAAGAGATCCAGA  491

seq1  AATGTACATTTGAAATACATTTGACAGGTAATTTTGAGGCAGGAAGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACATTTGAAATACATTTGACAGGTAATTTTGAGGCAGGAAGCTGT  541

seq1  CACCGTGCTTGGAGTGGATGCTCTTGTTTGCAGAGATGGACTCTGAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTGCTTGGAGTGGATGCTCTTGTTTGCAGAGATGGACTCTGAAGTC  591

seq1  CAGTGACCTGTTCAAAGTCATTCTGCTAGACAGTTGATCCAAAGTAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCTGTTCAAAGTCATTCTGCTAGACAGTTGATCCAAAGTAGCAG  641

seq1  AACTCTAGGGGAGGACTCCTGGGGGCAGTAAGGGAGGACTCCTGGGGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGGGGAGGACTCCTGGGGGCAGTAAGGGAGGACTCCTGGGGGCA  691

seq1  GTAGGGGAGGACTCCTGGGGGCAGTAGGGGAGGACTCCTGGGGGCAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGAGGACTCCTGGGGGCAGTAGGGGAGGACTCCTGGGGGCAGTAG  741

seq1  GGGAGGACTCCTGGGGGCAGTAGCGGGAGGTGGTAGAGGCTTCCAAGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGACTCCTGGGGGCAGTAGCGGGAGGTGGTAGAGGCTTCCAAGGGG  791

seq1  TTATGTAAATTTAAAACAAAGACCTGTATTTGTTGGCTAGTTCAATGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAAATTTAAAACAAAGACCTGTATTTGTTGGCTAGTTCAATGCAA  841

seq1  CCATTTTTTTTTTAGATCCCATAGATTCTCATTTAAAAAACGAGAATTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTTTTTTAGATCCCATAGATTCTCATTTAAAAAACGAGAATTAC  891

seq1  CCTGAGTTTTGTGTACTGTTAATGATCTTCTGTTTAATAAACATCAACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTTTGTGTACTGTTAATGATCTTCTGTTTAATAAACATCAACCA  941

seq1  CTCTGTTCTTATCTAAAAATCTGAATAATATTTCTTAGTAGCCATTGCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCTTATCTAAAAATCTGAATAATATTTCTTAGTAGCCATTGCTT  991

seq1  TCTCCATCCTTTCTCGTTTTCATAGCCCCTTTCTCTAGTGTCCCCTACTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCCTTTCTCGTTTTCATAGCCCCTTTCTCTAGTGTCCCCTACTG  1041

seq1  ACATTCCTCTCCACGACTTTAGTCACATCTGGGGTCTTGGTGTGATCACC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTCTCCACGACTTTAGTCACATCTGGGGTCTTGGTGTGATCACC  1091

seq1  AGACAGAGCATCATTGTTGAAAGGTTCTTCTCATTATAATAACTCTCTGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGCATCATTGTTGAAAGGTTCTTCTCATTATAATAACTCTCTGG  1141

seq1  AATTC  1155
      |||||
seq2  AATTC  1146

seq1: chr14_80464621_80465704
seq2: B6Ng01-180H13.g_68_1146

seq1  GAATTCTATGAAATGGAGTGCTTCTAGAGTGGAGTCTCCACTGCTGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAAATGGAGTGCTTCTAGAGTGGAGTCTCCACTGCTGTCCA  50

seq1  TCAGTGTCCCTCTTCCTGGGATGCTTTTCCACTACAGCATTCCCATGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCCCTCTTCCTGGGATGCTTTTCCACTACAGCATTCCCATGCAC  100

seq1  TCCCTTGGCCCTTCATGCCTGACCCATTGTGGATCCAATGCTGAGCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGGCCCTTCATGCCTGACCCATTGTGGATCCAATGCTGAGCTGGA  150

seq1  CACAGAACAGGCCGGTAAGTAGGTCTAATAACTGAGAAATCCTTTCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACAGGCCGGTAAGTAGGTCTAATAACTGAGAAATCCTTTCACTT  200

seq1  GCCCATTGATGCCTTTTGGAGGACAGAAAGTAATGATGGGAGAGAAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTGATGCCTTTTGGAGGACAGAAAGTAATGATGGGAGAGAAGAGC  250

seq1  AGCAACATAAGTACTTTCGTATTGGAACTGAAAGGGGATAAAGAGGGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATAAGTACTTTCGTATTGGAACTGAAAGGGGATAAAGAGGGGAT  300

seq1  CTCCATCCACTGGAAGGCATGAGGTTATATTGCTGGTAGGAGGAGTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCCACTGGAAGGCATGAGGTTATATTGCTGGTAGGAGGAGTAGAG  350

seq1  GTAGATATTAAACTTTTATTCAGATGTGAGGTTACTATGGGAGAGGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATATTAAACTTTTATTCAGATGTGAGGTTACTATGGGAGAGGACAG  400

seq1  AGGGGACAGGAATATAAACACTCCATGTTAAGTCTCCCACAATGCTGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACAGGAATATAAACACTCCATGTTAAGTCTCCCACAATGCTGCTC  450

seq1  TCCTTTTTAAAGTACACACCAGAGCCTCTAGGGTCTGGTATTAGAAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTAAAGTACACACCAGAGCCTCTAGGGTCTGGTATTAGAAGAGG  500

seq1  TCAATTAGGCAGGGAAGGCCACTGGCCTACAATAGAGATCTGGCTTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAGGCAGGGAAGGCCACTGGCCTACAATAGAGATCTGGCTTTGGC  550

seq1  AGGAGGAAGTGTAAAATGGAGAGAAATGAACAGAATAAGCAGGGAATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAGTGTAAAATGGAGAGAAATGAACAGAATAAGCAGGGAATTGT  600

seq1  AACTGAGTAGCAGGGAAAGAATCAGTATAATTTCACAATTTCTAACCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTAGCAGGGAAAGAATCAGTATAATTTCACAATTTCTAACCTTG  650

seq1  GCGATCCTAAGGACCAAGGAATTTCCTGGGCCAAAGTGTAGACTGAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATCCTAAGGACCAAGGAATTTCCTGGGCCAAAGTGTAGACTGAATGT  700

seq1  AATTAGACATGCTTCTCCAACTGAAGTCATAGACAGGATGAAAACACTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGACATGCTTCTCCAACTGAAGTCATAGACAGGATGAAAACACTAT  750

seq1  TAAAAATTGTAGAAAAGTCACACCAAAAAGCAAGAAAACTAGTGGGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTGTAGAAAAGTCACACCAAAAAGCAAGAAAACTAGTGGGCTGG  800

seq1  GAGTGAAGCTTACTGGTACAGCACTTTGGTATAAAGCCCTAAGTTCCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAGCTTACTGGTACAGCACTTTGGTATAAAGCCCTAAGTTCCATC  850

seq1  CAAATACAGCCAAAACCAAGAGAATGAGGGATGGTGCTGGAAAGATAGCT  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAAATACAGCCAAAATCAAGAGAATGAGGGATGGTGCTGGAAAGATAGCT  900

seq1  CAGCAGCTAAGAACACTTGCTGCTCCTGTTGAGAATCTCAGTTGAGCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTAAGAACACTTGCTGCTCCTGTTGAGAATCTCAGTTGAGCTTC  950

seq1  CAGTAACTACATGTTGGCTCACAATCATGCATAATTCCAGTTTCAGGGGA  1000
      ||||||||||||| |||||||  ||||||||||||| ||||||||  |||
seq2  CAGTAACTACATG-TGGCTCAACATCATGCATAATTTCAGTTTCA--GGA  997

seq1  ATTTCATACTGTTTTCTGACCTCCCTGGGTACCAGGTAGACACACAGTAC  1050
      ||||||||||| |||||||||||||| ||||||||  |||||||||||||
seq2  ATTTCATACTG-TTTCTGACCTCCCT-GGTACCAGTAAGACACACAGTAC  1045

seq1  ACAAACACACATG-AAGGTAAGAACCCCCCATATG  1084
      || ||| |||||| |||||||||||||| ||||||
seq2  AC-AACCCACATGAAAGGTAAGAACCCCTCATATG  1079