BAC Information

Click to search

BAC

Clone NameB6Ng01-180J22
Chromosome14 (Build37)
Map Location 114,979,271 - 114,980,198
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382947, LOC668791, LOC100043821
Downstream geneLOC100043521, Gpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180J22.bB6Ng01-180J22.g
ACCGA007002GA007003
length1,0391,200
definitionB6Ng01-180J22.b B6Ng01-180J22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgaattgggataggtaaatatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcaatttta
tgaggtcccatttatcgattctcgatcttacagcacaagcaattgctgtt
ctattcaggaatttttcccctgtacccatctcttcaaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagtcccttaa
tccacttagatttgaccttagtacaaggagataggaatggatcaattcgc
atttttctacatgataaccaccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatctctgggtcttcaattctgttccattgg
tctacttgtctgtcactataccaataccatgcagtttttatcacaattgc
tctagcacctcctcgggatagagcactaccttgtcttctattgtgactaa
acgaggctcccaagaagaccgatgccaagcagcctctgcacacgaataag
ctaaactgactgcattgcatttaatcgcatgggtcagaccacagaaaaac
tcatggttttgacaatttattagaaaggtgtttctttataggattcgctt
tcttaaaggcatatgaacaaggttttgtgtattatacaagaaggggccag
aaagacattttttaaattttagactaaaaattgttgaggtttataatgaa
tatacacccttaggagttaatgatggaagattttccattcatttactgaa
aatgtaaagtaatgatgaaggtccagtttcctttacatatatatgggcaa
tgaatgcttcaaaaaatcttcctcttactggtcgagatt

gaattcaaggaaaatgaagacacaacatgcacaacctaatgggacacaat
gaaaggaatgttaagaggaaatttcatagtgctaagtaacttcataaaga
cttggagagatcccatacaaacaacttaacagcacacttgaaagctcgaa
aacagtaggaagcaaacaccggagaggagttgatggcaggaaacagtcaa
agtcggggctgaaatcgacctgttagaaacaaagggaaatatacaaagaa
tcaagaaaaccaagagtttgttctctgagaaaatcactaagatagattaa
actcttagtcaaactaactaaattgcacagagatagtatccaaattaaca
aaatcagaaatgaaagtggagacttaacaacagaaagtgaggagattcaa
aaaattaccagaacctactacaaaagcatattttcaacaaaatgggaaaa
atctagctaaaatggatggttttctaggtggataccatgtaccaaagtta
aatcaagatcaggtaaactgaacagtcccataacccctaaggaaattgaa
atagtcattaaaagcttcccaaccagaaaaagtccagtaccagatagttt
agtgcagaattctaccagaccttcaaagaagagctaataccaatactact
caaactattccacaaaataaaaacagaagaaacactaattcattctatga
agccagttactctgatacataaatcacacaaagagctgacccccaccccc
acccccaaaatgagaatttcaggtgagttgtacttatgagtatctatgca
aaaatactcaacccccccaaaacaaaccacacaaaacaaaacaaaacaaa
caacaaaaaaaaaacctcacaaactgaatccaagaacacatcaaaaccat
cactcactaagatcgagtaggcttcatcccaggaattcagagatagttca
atatataaaaaaccatcaagatataaacgatataaacagactcaagggaa
aacagtcatactatatgctgaaaagccttaaaaaaaatacaatacccctt
catgttagagtcttggagaagtcaggattcacggcacaataccttaaaca
catgaaagcaatatattattcaaacaaacgcctgcatctaattgaattga
aagagaaacctagaaggcaattcacacttaaaatttctatgtgtttcgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_114979271_114980198
seq2: B6Ng01-180J22.b_151_1084

seq1  CGAATTGGGATAGGTAAATATCCTTTCCCAATCTGTTGGTGGCCTTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTGGGATAGGTAAATATCCTTTCCCAATCTGTTGGTGGCCTTTTTG  50

seq1  TCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGG  100

seq1  TCCCATTTATCGATTCTCGATCTTACAGCACAAGCAATTGCTGTTCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTATCGATTCTCGATCTTACAGCACAAGCAATTGCTGTTCTATT  150

seq1  CAGGAATTTTTCCCCTGTACCCATCTCTTCAAGGCTTTTCCCTACTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTTTTCCCCTGTACCCATCTCTTCAAGGCTTTTCCCTACTTTCT  200

seq1  CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTCCCTTAATCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTCCCTTAATCCAC  250

seq1  TTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCATTTT  300

seq1  TCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGT  350

seq1  CTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCA  400

seq1  TAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTGGTCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTGGTCTAC  450

seq1  TTGTCTGTCACTATACCAATACCATGCAGTTTTTATCACAATTGCTCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTCACTATACCAATACCATGCAGTTTTTATCACAATTGCTCTAG  500

seq1  CACCTCCTCGGGATAGAGCACTACCTTGTCTTCTATTGTGACTAAACGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTCGGGATAGAGCACTACCTTGTCTTCTATTGTGACTAAACGAG  550

seq1  GCTCCCAAGAAGACCGATGCCAAGCAGCCTCTGCACACGAATAAGCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAAGAAGACCGATGCCAAGCAGCCTCTGCACACGAATAAGCTAAA  600

seq1  CTGACTGCATTGCATTTAATCGCATGGGTCAGACCACAGAAAAACTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGCATTGCATTTAATCGCATGGGTCAGACCACAGAAAAACTCATG  650

seq1  GTTTTGACAATTTATTAGAAAGGTGTTTCTTTATAGG-TTCGC-TTCTTA  698
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  GTTTTGACAATTTATTAGAAAGGTGTTTCTTTATAGGATTCGCTTTCTTA  700

seq1  AAGGCATATGAACAAGGTTTTGTGTATTATACAAGAAGGGGCAAGAAAGA  748
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGGCATATGAACAAGGTTTTGTGTATTATACAAGAAGGGGCCAGAAAGA  750

seq1  CA-TTTTTAAATTTTAGACTAAAAATTGTTGAGGTTTATAATGAATATAC  797
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTAAATTTTAGACTAAAAATTGTTGAGGTTTATAATGAATATAC  800

seq1  ACCCTTAGGAGTTAATG-TTGAAGACTTTCCATTC-GTTACTGAAAATGT  845
      ||||||||||||||||| | ||||| |||||||||  |||||||||||||
seq2  ACCCTTAGGAGTTAATGATGGAAGATTTTCCATTCATTTACTGAAAATGT  850

seq1  AAAAGTAATTGTGAAGGTCCAGTTTCCCTTACATAACACATGGGCAATGA  895
       ||||||||  |||||||||||||||| |||||| | | |||||||||||
seq2  -AAAGTAATGATGAAGGTCCAGTTTCCTTTACAT-ATATATGGGCAATGA  898

seq1  AT--CTCAAAAAACACTCCTCTTACT-GTTGAGATT  928
      ||   ||||||||   |||||||||| || ||||||
seq2  ATGCTTCAAAAAATCTTCCTCTTACTGGTCGAGATT  934


| Home | SequenceCutter | Blast | Download |