BAC Information

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BAC

Clone NameB6Ng01-181C20
Chromosome14 (Build37)
Map Location 28,631,023 - 28,816,338
singlet/doubletdoublet
Overlap geneErc2
Upstream geneDnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181C20.bB6Ng01-181C20.g
ACCGA007411GA007412
length1,0931,082
definitionB6Ng01-181C20.b B6Ng01-181C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,815,240 - 28,816,338)(28,631,023 - 28,632,105)
sequence
gaattcttttaacccttgtgcattgtgtctactctatttgaaacttgaaa
tttagttgacaagatactgtgtgcctcctatgctttgctttattgctagt
taatccctacactaaaatgcaattgcaacaaactttacaactgcagtgtg
cctgctaatctttgactgtttaaataacatgcattttagtaactaaaaaa
ttgacattcaggtcactaaaagaaatcattaaactctgaataaaaacttc
ttttcttgtcccccacactgtcaataaacaacatgataatcttgtcacat
ttttggccactgtctcaggaatgcatcttaagtactcaaaggattaaatt
aaatctcacctgcagacaggctttacaattcaggcagaaaccttagttct
caaaggaaaattactttcattatcttaagttaaaaccaaatattctgtcc
tcgggaatttgcaggaatatagcagaatccaagaaaacagcttgagaaaa
ctttaagagagtttgctctttaagaccttgtctgaaagaattatttaagg
gagaattccttttaggaaatatttcctcaaggtcatgctaagacagctat
aaaactgtatcatttaaattacttcaagttgatgcctttacccagttttg
attctattcttggaggtagaatagaatctttggttttgctttgagaatta
ttgtattcttgcttactattttgattttggattgtctacggctttttgct
ttttaaaagagattgtataactttaagggccaaacacttaaaatgcatgt
gaagaataaaaatataagatgtatcattttaagcttaaaagtaagagggg
ggattagtgtggaattaaaagtatttgtgcgtgtaaatgaaaatgatagc
atctcaatatttatgaaactgttttccaacttaaagtacactatgcacct
taacaaagctcagtggtataacaactcacatggcagaaaccaccctgcta
gaagcattcatagcccacatgcatgcatgtatgtgctgtgcgtgcgcgtg
cacacagatgacccacacaggagaagggggtagagatgaggtg

gaattcaggtatatgaatcacttccttttgccctgtcatagaaaaaaaaa
tagcaaccaaaccaaaccaaaaccaaggtggctttggagtccagctgtgg
aggcctgattggtgtttttcagggaagactgcttatcaggagaaaggcta
tgttcttaagtggatttctgcatagaccttacaggaacagtttgcacatg
tggatagcgtgcccaagaaaagatttttacagtgactgacatcctcaaga
ccttcccaggaagaggaaaatgcgtcctttctcagtttcacgtatgcctt
tccctgatcaaaaggtggatttatccaaggtggcacctgaaaaataaatt
ttttaacaggattgcttcacagcgaagatgaaagtgcaagcaagtgttgg
acaggccaactggaaagggcccgagtgtgcacagtcttctgtttgttctt
gcaataaacatatgtggagtctgggaaggcttgatgccgtcatctggtgc
taggatggagatccccattgacgctggaaaaacaccagttggtgaagtat
aaaatgcagcttcaggtacacttgtgggttgggaagtgtgttgatgggaa
taaaaccttaaatcttcttagttttaaggatttgagtgaggagagtagac
agaagggctcaagctgagaatcgatggggtgggtatgtttttttctcaaa
tactgtatgtgaatgtcctgggagaaatgtgtaggagaactaaatgaaag
atgcccccctgtaggctttaagcgttgactggccaagttgtttcaccagt
gtttccttgttgctcatgcaacacttgttacatattatctttttgtgcat
tggctggccttgagtggagttgtttacattgggctttgcttgcccttagg
ttatgtactttctaggagaaatacttcgtcatcttctttttctgttctcc
aagaagtaatgatgcttgcacaagagaagcaaaggtgactttcagtagaa
agatttgactgtagagatagctcattggttagaacacttgtcttcagaga
cttgagtcaaattccagcactcatgccaacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_28815240_28816338
seq2: B6Ng01-181C20.b_44_1136 (reverse)

seq1  CCCCTC-TCTCT-CCCCCTCTCCCTGTGTGTGTCTATCTGTGTGCACGCG  48
      | |||| ||||| ||||||   |||||||| ||| |||||||||||||||
seq2  CACCTCATCTCTACCCCCTTCTCCTGTGTGGGTC-ATCTGTGTGCACGCG  49

seq1  CACGCACAAGCACATACATGCATGCATGTGGGGGCTATTGAATGCTTTCT  98
      ||||||| |||||||||||||||||||||  |||||| |||||||||   
seq2  CACGCAC-AGCACATACATGCATGCATGT--GGGCTA-TGAATGCTT--C  93

seq1  TAGCAGGGTGGTTTCTGCCATGTGAGTTGTTATACCACTGAGCTTTTGTT  148
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGCAGGGTGGTTTCTGCCATGTGAGTTGTTATACCACTGAGC-TTTGTT  142

seq1  AAGGTGCATAGTGTACTTTAAGTTGGAAAACAGTTTCATAAATATTGAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCATAGTGTACTTTAAGTTGGAAAACAGTTTCATAAATATTGAGA  192

seq1  TGCTATCATTTTCATTTACACGCACAAATACTTTTAATTCCACACTAATC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCATTTTCATTTACACGCACAAATACTTTTAATTCCACACTAATC  242

seq1  CCCCCTCTTACTTTTAAGCTTAAAATGATACATCTTATATTTTTATTCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCTTACTTTTAAGCTTAAAATGATACATCTTATATTTTTATTCTT  292

seq1  CACATGCATTTTAAGTGTTTGGCCCTTAAAGTTATACAATCTCTTTTAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCATTTTAAGTGTTTGGCCCTTAAAGTTATACAATCTCTTTTAAA  342

seq1  AAGCAAAAAGCCGTAGACAATCCAAAATCAAAATAGTAAGCAAGAATACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAAGCCGTAGACAATCCAAAATCAAAATAGTAAGCAAGAATACA  392

seq1  ATAATTCTCAAAGCAAAACCAAAGATTCTATTCTACCTCCAAGAATAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTCAAAGCAAAACCAAAGATTCTATTCTACCTCCAAGAATAGAA  442

seq1  TCAAAACTGGGTAAAGGCATCAACTTGAAGTAATTTAAATGATACAGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTGGGTAAAGGCATCAACTTGAAGTAATTTAAATGATACAGTTT  492

seq1  TATAGCTGTCTTAGCATGACCTTGAGGAAATATTTCCTAAAAGGAATTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTGTCTTAGCATGACCTTGAGGAAATATTTCCTAAAAGGAATTCT  542

seq1  CCCTTAAATAATTCTTTCAGACAAGGTCTTAAAGAGCAAACTCTCTTAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAAATAATTCTTTCAGACAAGGTCTTAAAGAGCAAACTCTCTTAAA  592

seq1  GTTTTCTCAAGCTGTTTTCTTGGATTCTGCTATATTCCTGCAAATTCCCG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCAAGCTGTTTTCTTGGATTCTGCTATATTCCTGCAAATTCCCG  642

seq1  AGGACAGAATATTTGGTTTTAACTTAAGATAATGAAAGTAATTTTCCTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGAATATTTGGTTTTAACTTAAGATAATGAAAGTAATTTTCCTTT  692

seq1  GAGAACTAAGGTTTCTGCCTGAATTGTAAAGCCTGTCTGCAGGTGAGATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTAAGGTTTCTGCCTGAATTGTAAAGCCTGTCTGCAGGTGAGATT  742

seq1  TAATTTAATCCTTTGAGTACTTAAGATGCATTCCTGAGACAGTGGCCAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAATCCTTTGAGTACTTAAGATGCATTCCTGAGACAGTGGCCAAA  792

seq1  AATGTGACAAGATTATCATGTTGTTTATTGACAGTGTGGGGGACAAGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGACAAGATTATCATGTTGTTTATTGACAGTGTGGGGGACAAGAAA  842

seq1  AGAAGTTTTTATTCAGAGTTTAATGATTTCTTTTAGTGACCTGAATGTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTTTTATTCAGAGTTTAATGATTTCTTTTAGTGACCTGAATGTCA  892

seq1  ATTTTTTAGTTACTAAAATGCATGTTATTTAAACAGTCAAAGATTAGCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAGTTACTAAAATGCATGTTATTTAAACAGTCAAAGATTAGCAG  942

seq1  GCACACTGCAGTTGTAAAGTTTGTTGCAATTGCATTTTAGTGTAGGGATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGCAGTTGTAAAGTTTGTTGCAATTGCATTTTAGTGTAGGGATT  992

seq1  AACTAGCAATAAAGCAAAGCATAGGAGGCACACAGTATCTTGTCAACTAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCAATAAAGCAAAGCATAGGAGGCACACAGTATCTTGTCAACTAA  1042

seq1  ATTTCAAGTTTCAAATAGAGTAGACACAATGCACAAGGGTTAAAAGAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGTTTCAAATAGAGTAGACACAATGCACAAGGGTTAAAAGAATT  1092

seq1  C  1099
      |
seq2  C  1093


seq1: chr14_28631023_28632105
seq2: B6Ng01-181C20.g_64_1145

seq1  GAATTCAGGTATATGAATCACTTCCTTTTGCCCTGTCATAGAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTATATGAATCACTTCCTTTTGCCCTGTCATAGAAAAAAAAA  50

seq1  TAGCAACCAAACCAAACCAAAACCAAGGTGGCTTTGGAGTCCAGCTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACCAAACCAAACCAAAACCAAGGTGGCTTTGGAGTCCAGCTGTGG  100

seq1  AGGCCTGATTGGTGTTTTTCAGGGAAGACTGCTTATCAGGAGAAAGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGATTGGTGTTTTTCAGGGAAGACTGCTTATCAGGAGAAAGGCTA  150

seq1  TGTTCTTAAGTGGATTTCTGCATAGACCTTACAGGAACAGTTTGCACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAAGTGGATTTCTGCATAGACCTTACAGGAACAGTTTGCACATG  200

seq1  TGGATAGCGTGCCCAAGAAAAGATTTTTACAGTGACTGACATCCTCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGCGTGCCCAAGAAAAGATTTTTACAGTGACTGACATCCTCAAGA  250

seq1  CCTTCCCAGGAAGAGGAAAATGCGTCCTTTCTCAGTTTCACGTATGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCAGGAAGAGGAAAATGCGTCCTTTCTCAGTTTCACGTATGCCTT  300

seq1  TCCCTGATCAAAAGGTGGATTTATCCAAGGTGGCACCTGAAAAATAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATCAAAAGGTGGATTTATCCAAGGTGGCACCTGAAAAATAAATT  350

seq1  TTTTAACAGGATTGCTTCACAGCGAAGATGAAAGTGCAAGCAAGTGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACAGGATTGCTTCACAGCGAAGATGAAAGTGCAAGCAAGTGTTGG  400

seq1  ACAGGCCAACTGGAAAGGGCCCGAGTGTGCACAGTCTTCTGTTTGTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCAACTGGAAAGGGCCCGAGTGTGCACAGTCTTCTGTTTGTTCTT  450

seq1  GCAATAAACATATGTGGAGTCTGGGAAGGCTTGATGCCGTCATCTGGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAACATATGTGGAGTCTGGGAAGGCTTGATGCCGTCATCTGGTGC  500

seq1  TAGGATGGAGATCCCCATTGACGCTGGAAAAACACCAGTTGGTGAAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGGAGATCCCCATTGACGCTGGAAAAACACCAGTTGGTGAAGTAT  550

seq1  AAAATGCAGCTTCAGGTACACTTGTGGGTTGGGAAGTGTGTTGATGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCAGCTTCAGGTACACTTGTGGGTTGGGAAGTGTGTTGATGGGAA  600

seq1  TAAAACCTTAAATCTTCTTAGTTTTAAGGATTTGAGTGAGGAGAGTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTTAAATCTTCTTAGTTTTAAGGATTTGAGTGAGGAGAGTAGAC  650

seq1  AGAAGGGCTCAAGCTGAGAATCGATGGGGTGGGTATG-TTTTTTCTCAAA  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAGGGCTCAAGCTGAGAATCGATGGGGTGGGTATGTTTTTTTCTCAAA  700

seq1  TACTGTATGTGAATGTCCTGGGAGAAATGTGTAGGAGAACTAAATGAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTATGTGAATGTCCTGGGAGAAATGTGTAGGAGAACTAAATGAAAG  750

seq1  ATGCCCCCCTGTAGGCTTTAAGCGTTGACTGGCCAAGTTGTTTCACCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCCCTGTAGGCTTTAAGCGTTGACTGGCCAAGTTGTTTCACCAGT  800

seq1  GTTTCCTTGTTGCTCATGCAACACTTGTTACATA-TATCTTTTTGTGCAT  848
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTTTCCTTGTTGCTCATGCAACACTTGTTACATATTATCTTTTTGTGCAT  850

seq1  TGGCTGGCCTTGAGTGGAGTTGTTTACATT-GGCTTTGCTTGCCCTTAGG  897
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGCTGGCCTTGAGTGGAGTTGTTTACATTGGGCTTTGCTTGCCCTTAGG  900

seq1  TTATGTACTTTCTAGGAG-AATACTTCGTCATC-TCTTTTTCTGTTCTCC  945
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  TTATGTACTTTCTAGGAGAAATACTTCGTCATCTTCTTTTTCTGTTCTCC  950

seq1  AAAGAAGTAATGATGCTTGCACAAGAGAAGC-AAGGTGACTTTCAGTAGA  994
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  -AAGAAGTAATGATGCTTGCACAAGAGAAGCAAAGGTGACTTTCAGTAGA  999

seq1  AAGATTGGACTGGAGAGATAGCTCAGTGGTTAAGAACACTTGTTCTTCCA  1044
      |||||| ||||| |||||||||||| ||||| |||||||||| |||| ||
seq2  AAGATTTGACTGTAGAGATAGCTCATTGGTT-AGAACACTTG-TCTT-CA  1046

seq1  GAGAACTTGAGTCAAAATCACAGCACTCATGGCCAACAG  1083
      ||| |||||||||||| || |||||||||| ||||||||
seq2  GAG-ACTTGAGTCAAATTC-CAGCACTCAT-GCCAACAG  1082


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