BAC Information

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BAC

Clone NameB6Ng01-181E01
Chromosome14 (Build37)
Map Location 44,035,241 - 44,066,740
singlet/doubletdoublet
Overlap geneLOC673380
Upstream geneEG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik
Downstream geneLOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181E01.bB6Ng01-181E01.g
ACCGA007464GA007465
length1,1341,110
definitionB6Ng01-181E01.b B6Ng01-181E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,065,603 - 44,066,740)(44,035,241 - 44,036,363)
sequence
gaattcagtgttcatcctgtggtagagcatggcccaaagaataaatcatc
ctctgaactaagcaaccaagtatcatgtgcaaaaaggctgtatctggaat
tcccaaggaaattgtatgccacatccttgctccttccaactgggtcctat
tggtactgattaaacttattatcttgggcagaggacagagagccagggga
ccaaatggagatagctgacgctcaagaaatcttaggtgagcctgaaggaa
tacactagttctgtgaaatgtttctactagattgtcccacaggctttggt
ccttagttttaaggctttttttcccctcttagttttaaggcagggataat
cctttgttcttattgctacatgaattctcagagggcataactagtatata
acggaaaaggctttataacacttcctactccaggagaatcctatgtgaca
ccaaggaaaacacagggaataaagaaccctgatgatcaatttgggcctct
aagggctcaacactatcattccctacaaactgtgcatcacacacatccta
agaccccatcaaaggtcccacaaccccagatcctgaacaaaacacacaca
actaacttcacacacagaaaaaaaattaaaatgccaaataaatccaggta
ggctccatagtctcagagtacaatgaataaaacaagagtaaagcagtaat
ggcctgcagacattggattcttacacagtaaggcagctattgtgaccagg
tccttccagctgttgacaaaaccaatcagactccaagcacctcaaggcca
agtacaaaagaggatgaccatacaacacacatcacttatctcatccaaca
atttaacaactgtcaagacttcttataatgaatgtgagagatgacacact
ccattcatgggagaaaatgtgggtcaacagagagggcacaatacagtcac
aagatactgggcataattttacctgtagttcaaatcagtattcatgtcat
gtccagattcaaaatagttcttcccgcctcagcatttatctcctgatata
aaatttcatatctctagtttattcatatctcatatgataggtaatgttgc
aacttgggatgaatgttcttcccagcagaacact
gaattccagaacaaatttaaaaccatgtcggtgtgctgggcatggtggtg
catgcctgtaatctcagcactcaggaggcagaggcaggtggatttctgca
ttcagttcaaggtaatcctggtctacaaagtgagatccaggacagccaga
gctatacagagaaaccctgtcttaaaaaaaacaaacaaacaaagaaatgc
catgtgtagtagcataagaatactttaatctctgcacttgaaaggcagca
cttgcaggcagatatctgtgagtttgaggccaatatggtcccatgagtcc
caaaacaggcagggcttcatagagagaccctatctcaaagaataaataaa
tctaaaaataaagttctatacacacaatgaaaatgtgatttagttatgca
aggataacacaatagatgtaaatcaaataaatgtatctcagcacaaaaat
agtctcaaaaattaatagttgaattgtcatctcagtacctgcagaaaatg
cattggacatgtccatcatcacctcatgataaaattcctgaagaaactag
gtataggagaaacatgcctcaccctaataaatcttctattcaacaaacat
agtcaacattatagtaatgggagagagagaaagtctgtataaaataagaa
acaagaccagagtataaattctctctaccttattcaacataatacctgag
acttagaagcaatgagcaagtataaagaaacaagatagaaagagaaaata
aacatgtggatccctgcaaactctactttcattagggaagtggtcttggt
gaagtaagaagaaaagtaaggtcagttcaaatttgtcagcaaggctggtt
caaacttctggagcttggtgcctagtggatgaatttttacaaatctgaac
tcagtaaaactttggaaaatggtttcctgttgacaggtactacaagaaac
tttaggcatgactaggtcagactcctctttacagttatgatcaaccagca
cccatgactttcacccagaatgagttgtctgacagagaaaagcatgttga
gttctagtaggagtccacctacatggagaaaggatacccttaccaatgtg
cctggcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44065603_44066740
seq2: B6Ng01-181E01.b_45_1178 (reverse)

seq1  AGTG-TCTGCTGGG-AGAACA-TCATCCCAAAGTTGCAACATTACTAATC  47
      |||| ||||||||| |||||| ||||||| |||||||||||||||  |||
seq2  AGTGTTCTGCTGGGAAGAACATTCATCCC-AAGTTGCAACATTACCTATC  49

seq1  ATATGAAGAATATGAATAAACTAGAAGATATGAAATTTTATATCAGGAAG  97
      ||||||   ||||||||||||||| |||||||||||||||||||||| ||
seq2  ATATGA--GATATGAATAAACTAG-AGATATGAAATTTTATATCAGG-AG  95

seq1  ATAAATGCTGA-GCGGGAAGAACTATTTTGAATCTTGGACATTGACATGA  146
      ||||||||||| |||||||||||||||||||||| |||||| ||||||||
seq2  ATAAATGCTGAGGCGGGAAGAACTATTTTGAATC-TGGACA-TGACATGA  143

seq1  ATACTGATTTGAACTACAGGTAAAATTATGCCCAGTATCTTGTTGACTGT  196
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATACTGATTTGAACTACAGGTAAAATTATGCCCAGTATCTTG-TGACTGT  192

seq1  ATTGTGCCCTCTCTGTTGACCCACATTTTCTCCCATGAATGGAGTGTGTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCCCTCTCTGTTGACCCACATTTTCTCCCATGAATGGAGTGTGTC  242

seq1  ATCTCTCACATTCATTATAAGAAGTCTTGACAGTTGTTAAATTGTTGGAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCACATTCATTATAAGAAGTCTTGACAGTTGTTAAATTGTTGGAT  292

seq1  GAGATAAGTGATGTGTGTTGTATGGTCATCCTCTTTTGTACTTGGCCTTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGTGATGTGTGTTGTATGGTCATCCTCTTTTGTACTTGGCCTTG  342

seq1  AGGTGCTTGGAGTCTGATTGGTTTTGTCAACAGCTGGAAGGACCTGGTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTTGGAGTCTGATTGGTTTTGTCAACAGCTGGAAGGACCTGGTCA  392

seq1  CAATAGCTGCCTTACTGTGTAAGAATCCAATGTCTGCAGGCCATTACTGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCTGCCTTACTGTGTAAGAATCCAATGTCTGCAGGCCATTACTGC  442

seq1  TTTACTCTTGTTTTATTCATTGTACTCTGAGACTATGGAGCCTACCTGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTTGTTTTATTCATTGTACTCTGAGACTATGGAGCCTACCTGGA  492

seq1  TTTATTTGGCATTTTAATTTTTTTTCTGTGTGTGAAGTTAGTTGTGTGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGGCATTTTAATTTTTTTTCTGTGTGTGAAGTTAGTTGTGTGTG  542

seq1  TTTTGTTCAGGATCTGGGGTTGTGGGACCTTTGATGGGGTCTTAGGATGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCAGGATCTGGGGTTGTGGGACCTTTGATGGGGTCTTAGGATGT  592

seq1  GTGTGATGCACAGTTTGTAGGGAATGATAGTGTTGAGCCCTTAGAGGCCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATGCACAGTTTGTAGGGAATGATAGTGTTGAGCCCTTAGAGGCCC  642

seq1  AAATTGATCATCAGGGTTCTTTATTCCCTGTGTTTTCCTTGGTGTCACAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATCATCAGGGTTCTTTATTCCCTGTGTTTTCCTTGGTGTCACAT  692

seq1  AGGATTCTCCTGGAGTAGGAAGTGTTATAAAGCCTTTTCCGTTATATACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCTCCTGGAGTAGGAAGTGTTATAAAGCCTTTTCCGTTATATACT  742

seq1  AGTTATGCCCTCTGAGAATTCATGTAGCAATAAGAACAAAGGATTATCCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGCCCTCTGAGAATTCATGTAGCAATAAGAACAAAGGATTATCCC  792

seq1  TGCCTTAAAACTAAGAGGGGAAAAAAAGCCTTAAAACTAAGGACCAAAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAAAACTAAGAGGGGAAAAAAAGCCTTAAAACTAAGGACCAAAGC  842

seq1  CTGTGGGACAATCTAGTAGAAACATTTCACAGAACTAGTGTATTCCTTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGACAATCTAGTAGAAACATTTCACAGAACTAGTGTATTCCTTCA  892

seq1  GGCTCACCTAAGATTTCTTGAGCGTCAGCTATCTCCATTTGGTCCCCTGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACCTAAGATTTCTTGAGCGTCAGCTATCTCCATTTGGTCCCCTGG  942

seq1  CTCTCTGTCCTCTGCCCAAGATAATAAGTTTAATCAGTACCAATAGGACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCCTCTGCCCAAGATAATAAGTTTAATCAGTACCAATAGGACC  992

seq1  CAGTTGGAAGGAGCAAGGATGTGGCATACAATTTCCTTGGGAATTCCAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGAAGGAGCAAGGATGTGGCATACAATTTCCTTGGGAATTCCAGA  1042

seq1  TACAGCCTTTTTGCACATGATACTTGGTTGCTTAGTTCAGAGGATGATTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCTTTTTGCACATGATACTTGGTTGCTTAGTTCAGAGGATGATTT  1092

seq1  ATTCTTTGGGCCATGCTCTACCACAGGATGAACACTGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGGGCCATGCTCTACCACAGGATGAACACTGAATTC  1134

seq1: chr14_44035241_44036363
seq2: B6Ng01-181E01.g_66_1175

seq1  GAATTCCAGAACAAATTTAAAACCATGTCGGTGTGCTGGGCATGGTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACAAATTTAAAACCATGTCGGTGTGCTGGGCATGGTGGTG  50

seq1  CATGCCTGTAATCTCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGTAATCTCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGCA  100

seq1  TTCAGTTCAAGGTAATCCTGGTCTACAAAGTGAGATCCAGGACAGCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCAAGGTAATCCTGGTCTACAAAGTGAGATCCAGGACAGCCAGA  150

seq1  GCTATACAGAGAAACCCTGTCTTAAAAAAAACAAACAAACAAAGAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACAGAGAAACCCTGTCTTAAAAAAAACAAACAAACAAAGAAATGC  200

seq1  CATGTGTAGTAGCATAAGAATACTTTAATCTCTGCACTTGAAAGGCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTAGTAGCATAAGAATACTTTAATCTCTGCACTTGAAAGGCAGCA  250

seq1  CTTGCAGGCAGATATCTGTGAGTTTGAGGCCAATATGGTCCCATGAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGGCAGATATCTGTGAGTTTGAGGCCAATATGGTCCCATGAGTCC  300

seq1  CAAAACAGGCAGGGCTTCATAGAGAGACCCTATCTCAAAGAATAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGGCAGGGCTTCATAGAGAGACCCTATCTCAAAGAATAAATAAA  350

seq1  TCTAAAAATAAAGTTCTATACACACAATGAAAATGTGATTTAGTTATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAATAAAGTTCTATACACACAATGAAAATGTGATTTAGTTATGCA  400

seq1  AGGATAACACAATAGATGTAAATCAAATAAATGTATCTCAGCACAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAACACAATAGATGTAAATCAAATAAATGTATCTCAGCACAAAAAT  450

seq1  AGTCTCAAAAATTAATAGTTGAATTGTCATCTCAGTACCTGCAGAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAAAAATTAATAGTTGAATTGTCATCTCAGTACCTGCAGAAAATG  500

seq1  CATTGGACATGTCCATCATCACCTCATGATAAAATTCCTGAAGAAACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGACATGTCCATCATCACCTCATGATAAAATTCCTGAAGAAACTAG  550

seq1  GTATAGGAGAAACATGCCTCACCCTAATAAATCTTCTATTCAACAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGAGAAACATGCCTCACCCTAATAAATCTTCTATTCAACAAACAT  600

seq1  AGTCAACATTATAGTAATGGGAGAGAGAGAAAGTCTGTATAAAATAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACATTATAGTAATGGGAGAGAGAGAAAGTCTGTATAAAATAAGAA  650

seq1  ACAAGACCAGAGTATAAATTCTCTCTACCTTATTCAACATAATACCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACCAGAGTATAAATTCTCTCTACCTTATTCAACATAATACCTGAG  700

seq1  ACTTAGAAGCAATGAGCAAGTATAAAGAAACAAGATAGAAAGAGAAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAAGCAATGAGCAAGTATAAAGAAACAAGATAGAAAGAGAAAATA  750

seq1  AACATGTGGATCCCTGCAAACTCTACTTTCATTAGGGAAGTGGTCTTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTGGATCCCTGCAAACTCTACTTTCATTAGGGAAGTGGTCTTGGT  800

seq1  GAAGTAAGAAGAAAAGTAAGGTCAGTTCAAATTTGTCAGCAAGGCTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGAAGAAAAGTAAGGTCAGTTCAAATTTGTCAGCAAGGCTGGTT  850

seq1  CAAACTTCTGGAGCTTGGTGCCTAGTGGATGAATTTTTACAAATCTGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCTGGAGCTTGGTGCCTAGTGGATGAATTTTTACAAATCTGAAC  900

seq1  TCAGTAAAACTTTGGAAAATGG-TTCCTGTTGACAGGTACTACAAGAAAA  949
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  TCAGTAAAACTTTGGAAAATGGTTTCCTGTTGACAGGTACTACAAG-AAA  949

seq1  CTTTAGGCATGACTAGGTCAGAACTCCTCTTTACAGTTTATGATCAACCA  999
      ||||||||||||||||||||| |||||||||||||| |||||||||||| 
seq2  CTTTAGGCATGACTAGGTCAG-ACTCCTCTTTACAG-TTATGATCAACC-  996

seq1  AGCACCCATGACCTTTTCACCCAGAATGAGTTGTCCTGACAGAGAAAAGG  1049
      ||||||||||||  |||||||||||||||||||| ||||||||||||| |
seq2  AGCACCCATGAC--TTTCACCCAGAATGAGTTGT-CTGACAGAGAAAA-G  1042

seq1  CATG-TGAGTTCTAGTAAGGAAGTCAAACTTACATTGAAGAAAGGATACC  1098
      |||| ||||||||||||  | ||||  || |||| || ||||||||||||
seq2  CATGTTGAGTTCTAGTA--GGAGTC-CACCTACA-TGGAGAAAGGATACC  1088

seq1  CTTACCAAATGGTGCCTGGCCATGT  1123
      ||||||||   |||||||| |||||
seq2  CTTACCAA--TGTGCCTGG-CATGT  1110