BAC Information

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BAC

Clone NameB6Ng01-181J09
Chromosome14 (Build37)
Map Location 24,216,411 - 24,348,598
singlet/doubletdoublet
Overlap geneKcnma1
Upstream gene1700112E06Rik, EG435392, LOC665068
Downstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181J09.bB6Ng01-181J09.g
ACCGA007707GA007708
length1,061321
definitionB6Ng01-181J09.b B6Ng01-181J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,216,411 - 24,217,467)(24,348,278 - 24,348,598)
sequence
gaattctgtaggggacagtttttttttgtttgtttgttttgttttgtttt
gttttgttttttgttttgttttgttttgttttttttcagccagaaattta
cccacaaaaccatggatttctaactacatttaaaaatcttgcaggaaacc
aggtattcattctaggaaagtctgttgtctcacaggatatgggttccgca
actggacaaatcccccactgctgtatatagtccctggcttcacaaggcag
gcagtcctcattagcctttgtttaagcacaatactcccaagatagggcaa
attcttatggcatgctatgtctccaattgtcagttgatactgtgtggcaa
ggagggtaggagctatgtaccaggattggaaagcaccctactggcttcaa
acctacacattggaggcttacaaaattccaattggctttcctatgtaatg
tgaacagtccaagtacttaggtcctagtgatattctgaaaatggatggaa
actgtaaaaagtgcattgatgagtccccttgttacactcttgctaaactt
tctccacaactgttttcttgacttgaggaataatttggaagtctgttatg
ggatcctccacattgcctgtctattgtcctttaatggctcagcactctat
ttaaattggctcctattctctttctgcctcccgtaggcaactgatccttt
gtccaactgggagaatgagtttggtgtcctgtaccaccctcatcctttgc
attattcaacagtggcctttgagccatatttgtgtggccccagtgaactg
ttcaggccaagtaattaggtttgctaagtgtcataaaacaagcaagccaa
aaaacttttcaatgggctccacttgaggaggctgtgacaaatgaaactca
gatgtgaagaaacatggagaaaccccactgtttccctctaaattacagga
aacgtgtgctgtctgactgtaaggggctcttttttctggatttctggtgg
gggggccatgagatgatagacataacattgggcagggtagttaagtaatg
gggaatggggg

cagtccttctgcaagaacaatggttcctaaccattgagccacgtctccag
tccctgtgtaactagtcaaccttcaccttttatcattcagttccttctga
agccaattgccagttctgggctcaggttccccaaatcctgctgtagcccc
cactctttgctccctgctgggcttcagccaagctcacagaactgagcatc
tgcgcagacctcaggaactctgcagcacaagcagaaactattggctcaag
ggccattttgaagacgtctgcagccatttctctgatggtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_24216411_24217467
seq2: B6Ng01-181J09.b_44_1104

seq1  GAATTCTGTAGGGGACAGTTTTTTTTTGTTTGTTTGTTTTGTTTTGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGGGGACAGTTTTTTTTTGTTTGTTTGTTTTGTTTTGTTTT  50

seq1  GTTTTGTTTTTTGTTTTGTTTTGTTTTGTTTTTTTTCAGCCAGAAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTTTGTTTTGTTTTGTTTTGTTTTTTTTCAGCCAGAAATTTA  100

seq1  CCCACAAAACCATGGATTTCTAACTACATTTAAAAATCTTGCAGGAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAAACCATGGATTTCTAACTACATTTAAAAATCTTGCAGGAAACC  150

seq1  AGGTATTCATTCTAGGAAAGTCTGTTGTCTCACAGGATATGGGTTCCGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTCATTCTAGGAAAGTCTGTTGTCTCACAGGATATGGGTTCCGCA  200

seq1  ACTGGACAAATCCCCCACTGCTGTATATAGTCCCTGGCTTCACAAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACAAATCCCCCACTGCTGTATATAGTCCCTGGCTTCACAAGGCAG  250

seq1  GCAGTCCTCATTAGCCTTTGTTTAAGCACAATACTCCCAAGATAGGGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCTCATTAGCCTTTGTTTAAGCACAATACTCCCAAGATAGGGCAA  300

seq1  ATTCTTATGGCATGCTATGTCTCCAATTGTCAGTTGATACTGTGTGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATGGCATGCTATGTCTCCAATTGTCAGTTGATACTGTGTGGCAA  350

seq1  GGAGGGTAGGAGCTATGTACCAGGATTGGAAAGCACCCTACTGGCTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTAGGAGCTATGTACCAGGATTGGAAAGCACCCTACTGGCTTCAA  400

seq1  ACCTACACATTGGAGGCTTACAAAATTCCAATTGGCTTTCCTATGTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACACATTGGAGGCTTACAAAATTCCAATTGGCTTTCCTATGTAATG  450

seq1  TGAACAGTCCAAGTACTTAGGTCCTAGTGATATTCTGAAAATGGATGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTCCAAGTACTTAGGTCCTAGTGATATTCTGAAAATGGATGGAA  500

seq1  ACTGTAAAAAGTGCATTGATGAGTCCCCTTGTTACACTCTTGCTAAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAAAAGTGCATTGATGAGTCCCCTTGTTACACTCTTGCTAAACTT  550

seq1  TCTCCACAACTGTTTTCTTGACTTGAGGAATAATTTGGAAGTCTGTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACAACTGTTTTCTTGACTTGAGGAATAATTTGGAAGTCTGTTATG  600

seq1  GGATCCTCCACATTGCCTGTCTATTGTCCTTTAATGGCTCAGCACTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTCCACATTGCCTGTCTATTGTCCTTTAATGGCTCAGCACTCTAT  650

seq1  TTAAATTGGCTCCTATTCTCTTTCTGCCTCCCGTAGGCAACTGATCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGGCTCCTATTCTCTTTCTGCCTCCCGTAGGCAACTGATCCTTT  700

seq1  GTCCAACTGGGAGAATGAGTTTGGTGTCCTGTACCACCCTCATCCTTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAACTGGGAGAATGAGTTTGGTGTCCTGTACCACCCTCATCCTTTGC  750

seq1  ATTATTCAACAGTGGCCTTTGAGCCATATTTGTGTGGCCCCAGTGAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCAACAGTGGCCTTTGAGCCATATTTGTGTGGCCCCAGTGAACTG  800

seq1  TTCAGGCCAAGTAATTAGGTTTGCTAAGTGTCATAAAACAAAGCAAGCCA  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCAGGCCAAGTAATTAGGTTTGCTAAGTGTCATAAAAC-AAGCAAGCCA  849

seq1  AAAAACTTTTCAATGGGCTCCACTTGAGGAGGCTGTGACAAATGAAACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTTTCAATGGGCTCCACTTGAGGAGGCTGTGACAAATGAAACTC  899

seq1  AGATGTGAAGAAACATGGAGAAACCCCACTG-TTCCCTCTAAATTACAGG  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGATGTGAAGAAACATGGAGAAACCCCACTGTTTCCCTCTAAATTACAGG  949

seq1  AAACGTGTGCTGTCTGACTGTAAGGGGCTCTTTTTCCTGGATTTCTGGTG  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAACGTGTGCTGTCTGACTGTAAGGGGCTCTTTTTTCTGGATTTCTGGTG  999

seq1  GGGGGGCCATGAGATGATAGACAT-ACATT-GGCAGGGTAGTTAAGTAAT  1047
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  GGGGGGCCATGAGATGATAGACATAACATTGGGCAGGGTAGTTAAGTAAT  1049

seq1  GGG--ATGGGGG  1057
      |||  |||||||
seq2  GGGGAATGGGGG  1061


seq1: chr14_24348278_24348598
seq2: B6Ng01-181J09.g_71_391 (reverse)

seq1  ACACACACACACACACACACACACACACACACACCATCAGAGAAATGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACCATCAGAGAAATGGCT  50

seq1  GCAGACGTCTTCAAAATGGCCCTTGAGCCAATAGTTTCTGCTTGTGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACGTCTTCAAAATGGCCCTTGAGCCAATAGTTTCTGCTTGTGCTGC  100

seq1  AGAGTTCCTGAGGTCTGCGCAGATGCTCAGTTCTGTGAGCTTGGCTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCCTGAGGTCTGCGCAGATGCTCAGTTCTGTGAGCTTGGCTGAAG  150

seq1  CCCAGCAGGGAGCAAAGAGTGGGGGCTACAGCAGGATTTGGGGAACCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGGGAGCAAAGAGTGGGGGCTACAGCAGGATTTGGGGAACCTGA  200

seq1  GCCCAGAACTGGCAATTGGCTTCAGAAGGAACTGAATGATAAAAGGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAACTGGCAATTGGCTTCAGAAGGAACTGAATGATAAAAGGTGAA  250

seq1  GGTTGACTAGTTACACAGGGACTGGAGACGTGGCTCAATGGTTAGGAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGACTAGTTACACAGGGACTGGAGACGTGGCTCAATGGTTAGGAACC  300

seq1  ATTGTTCTTGCAGAAGGACTG  321
      |||||||||||||||||||||
seq2  ATTGTTCTTGCAGAAGGACTG  321


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