BAC Information

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BAC

Clone NameB6Ng01-183F02
Chromosome14 (Build37)
Map Location 24,157,410 - 24,300,019
singlet/doubletdoublet
Overlap geneKcnma1
Upstream gene1700112E06Rik, EG435392, LOC665068
Downstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183F02.bB6Ng01-183F02.g
ACCGA008974GA008975
length1,0101,139
definitionB6Ng01-183F02.b B6Ng01-183F02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,299,507 - 24,300,019)(24,157,410 - 24,158,550)
sequence
gaattccagtttttctctttaaagtcttagatattctgtttgaattagtc
ctgtatcagcctcaggctgaatgatggtttaattctcaaagtcagtatcc
gctgtgaagagtaggttcttcctagacacaaggtagggtgaacctgggag
ttcataaattgttctatgaggctgttttctcaagatccttctctttgatc
tctgcaatggtatttgattccatcagtcctttcttgatgctctagccagg
aaaaaatgaaattttttggatatttcactttgttgtagactttctacatc
catggctgtatttggggttgcctagtagaaagagagagacaaaaagcaac
agggcttgacattctctttcctgggaccaaggtcccatgacagactctcc
tacctcctttaaccttcttctggttcacattgtcacacctgctactgttc
cctttgggtgtcctgggctcaggacagaaaaagaagtagctggaaagaat
gaacaaaccattctcatttaccccattcttttcaagtataaatcattccc
ttttctgttcccagagccagcatgaatacttctagagctttctctgtcca
cagtattgtagctactttcagatatcgaattgacttgagatcagactaga
ggctatcaggggaagcaatggcaaatgcactgttggttttgtgatttttc
taaaacaaagagaacattgcctcttttgcattgccatcaatactacctat
tgtagtgtgacaataatcattctctttggaggaacccttttacttatcca
cctttggctagaggctgggaatatcaaagcttgataagcttgggaggagc
caggcagtggttggcgcacgccctttaatccccagtgcttgggaggcaga
gacaggtgggatttcctgagttcaaggccagcctggtctacagagtgagt
ttccaggatagccagagtatatattagaaaccctgcctgggggagggggg
ggtgcttgtg

gaattcacaaagatccacctacttctgcctactgtgtactgggatcagag
gtgcgcaacaccatccctgactcctcagtttctcatctctgtatgggctt
accaacggatgagagatttcaaggtacaaggagacttggcttcatttcca
aatcgaagttgcaaattgatcaaaggaccacattttgcagacagtcaccg
gttggtaatgagacaagggctgggctgatgctgccattcatttggggatg
tctagcgctcaggaattccatgtcccttggaaggttcataagcacaaagt
gccagagacatgtacagggctccttatttcctgttctcctttatataaat
gttctactgagtgctaaactttaaaaagaacaaaaatactacttagtttc
cagtccctgagtgcacttaatttttatttttgtactattatttctcctca
tacagaccaactcacgttcagtgagttagtgttcattcttcttcctaaac
tacggaatctgtctgtttttcagccaaccgcataaccaggagcacacatt
ttaaatgctagctgtttccttccctttgaacagtgaaggggaagaaataa
actgttttcatcagaagttgcattcaaaagcatgaaaaattgcaagtgac
agctgtgcagattccgtggatgtgacattttttgaatttcttcaacttga
caagtaaacaccttacatcggtaatgctatatgcataatacatggcctgt
attttgacagccatcatcaaatgctgacttgagaaaatatgggtgtgcac
ctcaaagagtagcgcccataaagcaggcagagatacgggtcatacagtat
taggaagctgtattttgtttcggagcctgcaacaagccaaaagcatcctt
ttatttttatcttatttaaagatttcaatttttttcagctgtggaaagac
tcagttttctttgcgtgaacgttcatttagaaatgggggtacttgttctc
ctagggccttctacactgacttacacactccatttctctatagtcaccaa
aggctggttccatcaagcgtctgtcattacaggtgtgatgggagacggac
ctcttccacttaaggtctcttctcttctccatgggagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_24299507_24300019
seq2: B6Ng01-183F02.b_537_1057 (reverse)

seq1  CCCAAGCACCCCCCC--TCCCCAGGCAGGGTTTCTATATATA-ACTCTGG  47
      | |||||||||||||   |||||||||||||||||| ||||| |||||||
seq2  CACAAGCACCCCCCCCTCCCCCAGGCAGGGTTTCTA-ATATATACTCTGG  49

seq1  CTATCCTGG-AACTCACTCTGTAGACCAGGCTGGCCTTGAACTCA-GAAA  95
      ||||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  CTATCCTGGAAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGGAAA  99

seq1  T-CCACCTGTCTCTGCCTCCCAAGCACT-GGGATTAAA-GGCGTGCGCC-  141
      | |||||||||||||||||||||||||| ||||||||| |||||||||| 
seq2  TCCCACCTGTCTCTGCCTCCCAAGCACTGGGGATTAAAGGGCGTGCGCCA  149

seq1  ACCACTGCCTGGCTCCTCCCAAGCTTATCAAGCTTTGATATTCCCAGCCT  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCCTGGCTCCTCCCAAGCTTATCAAGCTTTGATATTCCCAGCCT  199

seq1  CTAGCCAAAGGTGGATAAGTAAAAGGGTTCCTCCAAAGAGAATGATTATT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAAAGGTGGATAAGTAAAAGGGTTCCTCCAAAGAGAATGATTATT  249

seq1  GTCACACTACAATAGGTAGTATTGATGGCAATGCAAAAGAGGCAATGTTC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACTACAATAGGTAGTATTGATGGCAATGCAAAAGAGGCAATGTTC  299

seq1  TCTTTGTTTTAGAAAAATCACAAAACCAACAGTGCATTTGCCATTGCTTC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTTAGAAAAATCACAAAACCAACAGTGCATTTGCCATTGCTTC  349

seq1  CCCTGATAGCCTCTAGTCTGATCTCAAGTCAATTCGATATCTGAAAGTAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATAGCCTCTAGTCTGATCTCAAGTCAATTCGATATCTGAAAGTAG  399

seq1  CTACAATACTGTGGACAGAGAAAGCTCTAGAAGTATTCATGCTGGCTCTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATACTGTGGACAGAGAAAGCTCTAGAAGTATTCATGCTGGCTCTG  449

seq1  GGAACAGAAAAGGGAATGATTTATACTTGAAAAGAATGGGGTAAATGAGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGAAAAGGGAATGATTTATACTTGAAAAGAATGGGGTAAATGAGA  499

seq1  ATGGTTTGTTCATTCTTTCCAG  513
      ||||||||||||||||||||||
seq2  ATGGTTTGTTCATTCTTTCCAG  521


seq1: chr14_24157410_24158550
seq2: B6Ng01-183F02.g_69_1207

seq1  GAATTCACAAAGATCCACCTACTTCTGCCTACTGTGTACTGGGATCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAGATCCACCTACTTCTGCCTACTGTGTACTGGGATCAGAG  50

seq1  GTGCGCAACACCATCCCTGACTCCTCAGTTTCTCATCTCTGTATGGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCAACACCATCCCTGACTCCTCAGTTTCTCATCTCTGTATGGGCTT  100

seq1  ACCAACGGATGAGAGATTTCAAGGTACAAGGAGACTTGGCTTCATTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACGGATGAGAGATTTCAAGGTACAAGGAGACTTGGCTTCATTTCCA  150

seq1  AATCGAAGTTGCAAATTGATCAAAGGACCACATTTTGCAGACAGTCACCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGAAGTTGCAAATTGATCAAAGGACCACATTTTGCAGACAGTCACCG  200

seq1  GTTGGTAATGAGACAAGGGCTGGGCTGATGCTGCCATTCATTTGGGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAATGAGACAAGGGCTGGGCTGATGCTGCCATTCATTTGGGGATG  250

seq1  TCTAGCGCTCAGGAATTCCATGTCCCTTGGAAGGTTCATAAGCACAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCGCTCAGGAATTCCATGTCCCTTGGAAGGTTCATAAGCACAAAGT  300

seq1  GCCAGAGACATGTACAGGGCTCCTTATTTCCTGTTCTCCTTTATATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGACATGTACAGGGCTCCTTATTTCCTGTTCTCCTTTATATAAAT  350

seq1  GTTCTACTGAGTGCTAAACTTTAAAAAGAACAAAAATACTACTTAGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACTGAGTGCTAAACTTTAAAAAGAACAAAAATACTACTTAGTTTC  400

seq1  CAGTCCCTGAGTGCACTTAATTTTTATTTTTGTACTATTATTTCTCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCTGAGTGCACTTAATTTTTATTTTTGTACTATTATTTCTCCTCA  450

seq1  TACAGACCAACTCACGTTCAGTGAGTTAGTGTTCATTCTTCTTCCTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACCAACTCACGTTCAGTGAGTTAGTGTTCATTCTTCTTCCTAAAC  500

seq1  TACGGAATCTGTCTGTTTTTCAGCCAACCGCATAACCAGGAGCACACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGAATCTGTCTGTTTTTCAGCCAACCGCATAACCAGGAGCACACATT  550

seq1  TTAAATGCTAGCTGTTTCCTTCCCTTTGAACAGTGAAGGGGAAGAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCTAGCTGTTTCCTTCCCTTTGAACAGTGAAGGGGAAGAAATAA  600

seq1  ACTGTTTTCATCAGAAGTTGCATTCAAAAGCATGAAAAATTGCAAGTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTCATCAGAAGTTGCATTCAAAAGCATGAAAAATTGCAAGTGAC  650

seq1  AGCTGTGCAGATTCCGTGGATGTGACATTTTTTGAATTTCTTCAACTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGCAGATTCCGTGGATGTGACATTTTTTGAATTTCTTCAACTTGA  700

seq1  CAAGTAAACACCTTACATCGGTAATGCTATATGCATAATACATGGCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAACACCTTACATCGGTAATGCTATATGCATAATACATGGCCTGT  750

seq1  ATTTTGACAGCCATCATCAAATGCTGACTTGAGAAAATATGGGTGTGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACAGCCATCATCAAATGCTGACTTGAGAAAATATGGGTGTGCAC  800

seq1  CTCAAAGAGTAGCGCCCATAAAGCAGGCAGAGATACGGGTCATACAGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAGTAGCGCCCATAAAGCAGGCAGAGATACGGGTCATACAGTAT  850

seq1  TAGGAAAGCTGTATTTTGTTTCGGAGCCTGCAACAAGCCAAAAGCATCCT  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGG-AAGCTGTATTTTGTTTCGGAGCCTGCAACAAGCCAAAAGCATCCT  899

seq1  TTTA-TTTTATCTTATTTAAAGATTCCA--TTTTTTCAGCTGTGGAAAGA  947
      |||| |||||||||||||||||||| ||  ||||||||||||||||||||
seq2  TTTATTTTTATCTTATTTAAAGATTTCAATTTTTTTCAGCTGTGGAAAGA  949

seq1  CTCAG-TTTCTTTGCGTGAAACGTTCATTTAGAAAT-GGGGTACTTG-TC  994
      ||||| |||||||||||| ||||||||||||||||| |||||||||| ||
seq2  CTCAGTTTTCTTTGCGTG-AACGTTCATTTAGAAATGGGGGTACTTGTTC  998

seq1  TCCTA-GGCCTCTTACACTTGACTTACACACTCCATTTCCTCTATAGTCA  1043
      ||||| |||||  ||||| ||||||||||||||||||| |||||||||||
seq2  TCCTAGGGCCTTCTACAC-TGACTTACACACTCCATTT-CTCTATAGTCA  1046

seq1  CC-AAGGCTGGTTCCATC-AGCGTCTGCAATTTACAAGGTGTGATGGGGA  1091
      || ||||||||||||||| ||||||||  | |||| ||||||||| ||||
seq2  CCAAAGGCTGGTTCCATCAAGCGTCTGTCA-TTAC-AGGTGTGAT-GGGA  1093

seq1  GACAGACACTCTTCCACTAAAGGTCTCTCTCTCTCCTTCACATGGGAGCC  1141
      ||| ||| |||||||||| ||||||||| ||||| ||   ||||||||||
seq2  GACGGAC-CTCTTCCACTTAAGGTCTCT-TCTCTTCT--CCATGGGAGCC  1139


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